Genetic Bottlenecks Driven by Population Disconnection

Abstract: Connectivity among populations plays a crucial role in maintaining genetic variation at a local scale, especially in small populations affected strongly by genetic drift. The negative consequences of population disconnection on allelic richness and gene diversity (heterozygosity) are well recognized and empirically established. It is not well recognized, however, that a sudden drop in local effective population size induced by such disconnection produces a temporary disequilibrium in allelic frequency distributions that is akin to the genetic signature of a demographic bottleneck. To document this effect, we used individual‐based simulations and empirical data on allelic richness and gene diversity in six pairs of isolated versus well‐connected (core) populations of European tree frogs. In our simulations, population disconnection depressed allelic richness more than heterozygosity and thus resulted in a temporary excess in gene diversity relative to mutation drift equilibrium (i.e., signature of a genetic bottleneck). We observed a similar excess in gene diversity in isolated populations of tree frogs. Our results show that population disconnection can create a genetic bottleneck in the absence of demographic collapse.     

Assessment of Management to Mitigate Anthropogenic Effects on Large Whales

United States and Canadian governments have responded to legal requirements to reduce human‐induced whale mortality via vessel strikes and entanglement in fishing gear by implementing a suite of regulatory actions. We analyzed the spatial and temporal patterns of mortality of large whales in the Northwest Atlantic (23.5°N to 48.0°N), 1970 through 2009, in the context of management changes. We used a multinomial logistic model fitted by maximum likelihood to detect trends in cause‐specific mortalities with time. We compared the number of human‐caused mortalities with U.S. federally established levels of potential biological removal (i.e., species‐specific sustainable human‐caused mortality). From 1970 through 2009, 1762 mortalities (all known) and serious injuries (likely fatal) involved 8 species of large whales. We determined cause of death for 43% of all mortalities; of those, 67% (502) resulted from human interactions. Entanglement in fishing gear was the primary cause of death across all species (n = 323), followed by natural causes (n = 248) and vessel strikes (n = 171). Established sustainable levels of mortality were consistently exceeded in 2 species by up to 650%. Probabilities of entanglement and vessel‐strike mortality increased significantly from 1990 through 2009. There was no significant change in the local intensity of all or vessel‐strike mortalities before and after 2003, the year after which numerous mitigation efforts were enacted. So far, regulatory efforts have not reduced the lethal effects of human activities to large whales on a population‐range basis, although we do not exclude the possibility of success of targeted measures for specific local habitats that were not within the resolution of our analyses. It is unclear how shortfalls in management design or compliance relate to our findings. Analyses such as the one we conducted are crucial in critically evaluating wildlife‐management decisions. The results of these analyses can provide managers with direction for modifying regulated measures and can be applied globally to mortality‐driven conservation issues. Evaluación del Manejo para Mitigar Efectos Antropogénicos sobre Ballenas Mayores     

Potential Long-Term Ecological Impacts Caused by Disturbance of Contaminated Sediments:A Case Study

Several submerged barges were recently removed from the Passaic River, New Jersey, USA, in two areas (areas 1 and 2) where contaminated sediments are known to exist. During removal of the single barge in area 1, elevated turbidity levels and chemical parameters were measured. Greater increases were measured in area 2, where several barges were removed. In both areas, water column concentrations of polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs) and several metals exceeded one or more water quality criteria; turbidity levels in area 2 also exceeded regulatory criteria. Potential chemical bioaccumulation from the water column into residential aquatic receptors was estimated using standard models and assumptions. The modeled results predicted that steady-state tissue concentrations of bioaccumulative chemicals would not occur as a result of the brief increase in water column concentrations that occurred during barge removal but that metals and PCDD/Fs could bioaccumulate to levels that exceed regulatory ecological criteria during long-term sediment disturbance activities. In addition, based on some simplistic assumptions regarding settling of suspended sediments, we estimate that chemical bioaccumulation from surface sediments into the food web could result in substantial increases in PCDD/F body burdens in the benthic forage fish, mummichog. Our findings are consistent with the limited number of field studies that have measured increased body burdens of bioaccumulative chemicals following dredging. We suggest that, prior to consideration of extensive dredging as a remedial alternative for any river system, the potential significant and long-term impacts on the food web must be evaluated.     

Seventy‐One Important Questions for the Conservation of Marine Biodiversity

The ocean provides food, economic activity, and cultural value for a large proportion of humanity. Our knowledge of marine ecosystems lags behind that of terrestrial ecosystems, limiting effective protection of marine resources. We describe the outcome of 2 workshops in 2011 and 2012 to establish a list of important questions, which, if answered, would substantially improve our ability to conserve and manage the world's marine resources. Participants included individuals from academia, government, and nongovernment organizations with broad experience across disciplines, marine ecosystems, and countries that vary in levels of development. Contributors from the fields of science, conservation, industry, and government submitted questions to our workshops, which we distilled into a list of priority research questions. Through this process, we identified 71 key questions. We grouped these into 8 subject categories, each pertaining to a broad component of marine conservation: fisheries, climate change, other anthropogenic threats, ecosystems, marine citizenship, policy, societal and cultural considerations, and scientific enterprise. Our questions address many issues that are specific to marine conservation, and will serve as a road map to funders and researchers to develop programs that can greatly benefit marine conservation. Setenta y Un Preguntas Importantes para la Conservación de la Biodiversidad Marina     

A Risk-Assessment System for Screening Out Invasive Pest Plants from Hawaii and Other Pacific Islands

Abstract:  Ecosystems of Hawaii and other Pacific Islands have been greatly affected by invasive pest plants, and ongoing, deliberate plant introductions make it likely that additional pest plants will become established. We tested the ability of a modified version of the Australian and New Zealand weed risk-assessment system to identify pest plants in Hawaii and other Pacific Islands. We used information taken from outside Hawaii to predict the behavior—"pest" or "not a pest"—of almost 200 plant species introduced to Hawaii and other Pacific Islands. The screening system initially recommended further evaluation of 24% of these species, but an additional secondary screening was applied to this group, thereby reducing the rate of indecision to only 8%. To independently test the accuracy of the screening system, we compared its decisions—pest or not a pest—to opinions of 25 expert botanists and weed scientists who had substantial field experience in Hawaii or other Pacific Islands. We asked the experts to rate each species as "major pest,""minor pest," or "not a pest" in native or managed ecosystems. The screening system correctly identified 95% of major pests and 85% of nonpests. Among minor pests identified by the experts, 33% were classified as nonpests by the screening system. Use of the screening system to assess proposed plant introductions to Hawaii or other Pacific Islands and to identify high-risk species used in horticulture and forestry would greatly reduce future pest-plant problems and allow entry of most nonpests. The screening process is objective, rapid, and cost-efficient. With minor modifications, it is likely to be useful in many parts of the world.     

Effects of Artisanal Fishing on Caribbean Coral Reefs

Abstract:  Although the impacts of industrial fishing are widely recognized, marine ecosystems are generally considered less threatened by artisanal fisheries. To determine how coral reef fish assemblages and benthic communities are affected by artisanal fishing, we studied six Caribbean islands on which fishing pressure ranged from virtually none in Bonaire, increasing through Saba, Puerto Rico, St Lucia, and Dominica, and reaching very high intensities in Jamaica. Using stationary-point fish counts at 5 m and 15 m depth, we counted and estimated the lengths of all noncryptic, diurnal fish species within replicate 10-m-diameter areas. We estimated percent cover of coral and algae and determined reef structural complexity. From fish numbers and lengths we calculated mean fish biomass per count for the five most commercially important families. Groupers (Serranidae), snappers (Lutjanidae), parrotfish (Scaridae), and surgeonfish (Acanthuridae) showed order-of-magnitude differences in biomass among islands. Biomass fell as fishing pressure increased. Only grunts (Haemulidae) did not follow this pattern. Within families, larger-bodied species decreased as fishing intensified. Coral cover and structural complexity were highest on little-fished islands and lowest on those most fished. By contrast, algal cover was an order of magnitude higher in Jamaica than in Bonaire. These results suggest that following the Caribbean-wide mass mortality of herbivorous sea urchins in 1983–1984 and consequent declines in grazing pressure on reefs, herbivorous fishes have not controlled algae overgrowing corals in heavily fished areas but have restricted growth in lightly fished areas. In summary, differences among islands in the structure of fish and benthic assemblages suggest that intensive artisanal fishing has transformed Caribbean reefs.     

Extirpation of Macroalgae (Sargassum spp.) on the Subtropical East Australian Coast

Abstract: Populations of large brown algae of the Laminariales and Fucales (Phaeophyta) have declined or been extirpated from many locations on temperate coasts worldwide. We conducted field surveys and a literature review, and examined herbarium specimens, through which we discovered previously unreported extirpations of large brown algal species from a tropical and subtropical coastline. Sargassum amaliae, S. aquifolium, S. carpophyllum, S. polycystum, and S. spinifex were common habitat‐forming macroalgae that supported diverse assemblages of invertebrates and smaller algae before urbanization began in 1970 along the 45‐km length of Sunshine Coast in Queensland, Australia. Causes of these extirpations are not known, but are consistent with losses of other large brown algal species from coastal areas undergoing urbanization or eutrophication. Sargassum spp. do not have the characteristics thought to protect marine species from extinction (large geographical ranges, occurrence on many different substrata, long‐distance dispersal). Some local Sargassum spp. are endemic to eastern Australia. Abundance of Sargassum is limited by suitable substrata on the sandy southern Queensland coast (370 km). These substrata are 12 rocky headlands separated by long (5–105 km) sandy beaches. Most multicellular propagules (the only motile stage in Sargassum) settle within 1–3 m of parental thalli, which restricts long‐distance dispersal needed to maintain connectivity among populations and to recolonize areas of the headlands from which populations have been extirpated. Local Sargassum spp. could be categorized as data deficient by the International Union for Conservation of Nature (IUCN), but the IUCN vulnerable category is more accurate given extirpations, limited habitat, and the lack of connectivity among populations.     

Increased Infectious Disease Susceptibility Resulting from Outbreeding Depression

Abstract:  The mechanisms by which outbreeding depression leads to reduced fitness are poorly understood. We considered the hypothesis that outbreeding can depress fitness by increasing the susceptibility of hybrid individuals and populations to infectious disease. Competitive breeding trials in experimental ponds indicated that outbred largemouth bass (  Micropterus salmoides ) crossed from two geographically and genetically distinct populations suffered a reduction in fitness of approximately 14% relative to parental stocks. We measured the comparative susceptibility of these same outbred stocks to a novel viral pathogen, largemouth bass virus. Following experimental inoculation, F2 generation hybrids suffered mortality at a rate 3.6 times higher than either F1 generation hybrids or wild-type parental fish. Analysis of viral loads indicated that viral replication was more rapid in F2 fish than in F1 hybrids or wild-type parental fish. We attribute these results to the disruption of coadapted gene complexes in the immune systems of outbred fish in the F2 generation. Increased susceptibility to infectious disease may be an important but underappreciated mechanism by which outbreeding reduces the fitness of individuals and populations and by which novel infectious diseases emerge in populations of hybrid organisms.