Enterotoxin production and antimicrobial susceptibility in Staphylococci isolated from traditional raw milk cheeses in Serbia

This study was undertaken to determine the prevalence of coagulase positive staphylococci (CPS) by examining a total of 71 raw milk cheeses. Additionally, enterotoxigenicity, antimicrobial susceptibility and the presence of mecA and mecC genes in the staphylococcal isolates were investigated. The isolation and enumeration procedure of CPS followed the International Organization for Standardization (ISO) standard. The presumptive staphylococci were identified by matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) using the VITEK MS system. VIDAS® Staph enterotoxin II assay was used for the detection of classical enterotoxins. Antimicrobial susceptibility testing (AST) was accomplished performing the disk diffusion method. All suspected methicillin resistant staphylococci were investigated for the presence of mecA and mecC genes by PCR assay. A high prevalence (87.32%) of CPS was detected in the cheeses at contamination levels up to 5.58 log CFU g^?1. Among 47 staphylococcal isolates screened for enterotoxin production, only one isolate, identified as S. hyicus, was confirmed as being enterotoxigenic. Resistance to penicillin (63.70%) was the most common resistance among the tested Staphylococcus aureus isolates. The dominant phenotypic resistance patterns in coagulase negative staphylococci (CNS) were resistance to ofloxacin and fusidic acid. All CNS isolates were susceptible to the clinically important antibiotics clindamycin, chloramphenicol, gentamicin, linezolid, rifampicin and trimethoprim-sulfamethoxazole. The mecA and mecC genes were not detected. To the best of our knowledge, this is the first study concerning evaluation of the presence of methicillin resistant staphylococci (MRS) in dairy products in Serbia.     

Major challenges of integrating agriculture into climate change mitigation policy frameworks

Taking the European Union (EU) as a case study, we simulate the application of non-uniform national mitigation targets to achieve a sectoral reduction in agricultural non-carbon dioxide (CO₂) greenhouse gas (GHG) emissions. Scenario results show substantial impacts on EU agricultural production, in particular, the livestock sector. Significant increases in imports and decreases in exports result in rather moderate domestic consumption impacts but induce production increases in non-EU countries that are associated with considerable emission leakage effects. The results underline four major challenges for the general integration of agriculture into national and global climate change mitigation policy frameworks and strategies, as they strengthen requests for (1) a targeted but flexible implementation of mitigation obligations at national and global level and (2) the need for a wider consideration of technological mitigation options. The results also indicate that a globally effective reduction in agricultural emissions requires (3) multilateral commitments for agriculture to limit emission leakage and may have to (4) consider options that tackle the reduction in GHG emissions from the consumption side.     

A Functional Approach to the Assessment of the Nutritional Value of Particulate Organic Matter

Organic matter lability can be determined with different approaches, based on the quantitative and qualitative estimate of its nutritional value. the C/N ratio and the particulate organic matter (as the sum of protein, carbohydrate and lipid bulks) vs total suspended matter (POM/TSM) deal with a quantitative assessment of the organic matter bulk, while other indices such as proteins/carbohydrates ratio (PRT/CHO) may give also qualitative information. Gordon (1970) proposed a functional approach, based on organic carbon decrease after enzymatic digestion. Coupling Gordon's approach with the evaluation of the main biochemical components (proteins, carbohydrates and lipids) contained in the particulate organic matter, a simple method to assess lability and nutritional value of organic substrates is proposed.

Water samples were collected at the surface and close to the bottom in a shallow coastal station (10 m depth) in the Marconi Gulf (Ligurian Sea, NW Mediterranean). the difference between “total labile” and “hydrolyzed labile” organic matter (respectively before and after enzymatic digestion) suggests a relevant presence of resuspended refractory materials vs about 60% of labile hydrolyzed organic matter, thus confirming the importance of a more qualitative approach to organic matter studies.     

Decomposition of faecal matter and somatic tissue of Mytilus galloprovincialis: changes in organic matter composition and microbial succession

Variations in the biochemical composition of pseudo-faeces and faeces egested by Mytilus galloprovincialis (Lamarck) and in detritus derived from the somatic tissue of mussels during the decomposition process were investigated by means of two intensive experiments. During the degradation process, the biochemical composition of pseudo-faeces and faeces showed a clear increase in protein content related to the microbial colonization. Changes also occurred in the biochemical composition of particulate organic matter (POM) in the surrounding water due to faecal matter decomposition, heterotrophic utilization and conversion of particulate carbohydrates and proteins to the dissolved pool. The study of production and heterotrophic utilization of the POM derived from the somatic tissue of M. galloprovincialis collected in the Gulf of Tigullio, Italy in 1990 indicates that this kind of material is rapidly decomposable and largely available for benthic consumers. Bacteria utilized selectively the different compounds, and proteins proved to be the most suitable substrate for bacterial growth. The input of organic detritus into the experimental system resulted in an enhancement of bacterial activity and consequently of the RNA/DNA ratio. Bacterial DNA accounted on average for 17% of particulate DNA. During decomposition processes, nutrient release was about ten times higher than the value calculated from individual excretion rates, indicating that mussel beds may be important sites for nutrient regeneration. Carbon conversion efficiency for bacteria growing on faecal matter was, on average, 17.2%. The potential importance of faecal output and bacterial production as a carbon resource for benthic communities near mussel culture areas is discussed.     

Genetic effects of air pollution on forest tree species of the Carpathian Mountains

The effects of air pollution on the genetic structure of Norway spruce, European silver fir and European beech were studied at four polluted sites in Slovakia, Romania and Czech Republic. In order to reduce potential effects of site heterogeneity on the health condition, pair-wise sampling of pollution-tolerant and sensitive trees was applied. Genotypes of sampled trees were determined at 21 isozyme gene loci of spruce, 18 loci of fir and 15 loci of beech. In comparison with Norway spruce, fewer genetic differences were revealed in beech and almost no differentiation between pollution-tolerant and sensitive trees was observed in fir. In adult stands of Norway spruce, sensitive trees exhibited higher genetic multiplicity and diversity. The decline of pollution-sensitive trees may result thus in a gradual genetic depletion of pollution-exposed populations of Norway spruce through the loss of less frequent alleles with potential adaptive significance to altered stressing regimes in the future. Comparison of the subsets of sensitive and tolerant Norway spruce individuals as determined by presence or absence of discolorations ("spruce yellowing") revealed different heterozygosity at 3 out of 11 polymorphic loci.     

Sedimentary organic matter and bacterial community in microtidal mixed beaches of the Ligurian Sea (NW Mediterranean)

The quantity and quality of organic matter, and bacterial density and frequency of dividing cells were investigated in six microtidal mixed beaches of the Ligurian Sea (NW Mediterranean) to evaluate their main trophodynamic features. Concentrations of biopolymeric carbon (average 88.5?±?89.0 µgC/g) and the protein:carbohydrate ratio (on average lower than 1) were very low and classified these beaches as highly oligotrophic. The study of biochemical composition highlighted the nature of organic matter as being mainly refractory; furthermore, the quantitative differences observed along the across-beach gradient together with the unchanged pattern in qualitative features suggest that the organic matter in Ligurian beaches is prevalently of marine origin. This implies a negligible contribution of allochtonous and anthropogenic terrestrial input or in situ autochthonous production. Bacterial density displayed values ranging from 0.1–9.0 cell?×?10⁸/g DW in the top 2?cm layer and showed a significant correlation with the quantity of organic matter. In addition, the frequency of dividing cells showed a positive correlation with the protein:carbohydrate ratio, suggesting that the biochemical composition of organic matter also has an influence on the active bacterial fraction. Because of the exposed nature, a strong coupling was found between the beach and the marine systems, and this seems to be of fundamental importance in terms of material and energy supply for the beach ecosystem. A shortage within this linkage was observed in summer owing to the strong environmental constrains leading to a sort of “beach desertification” and to a marked oligotrophy. Summer also has an effect of smoothing for spatial variability occurring within the biochemical and microbiological variables among the different beaches. The linkage observed between the sea and the land is the main factor controlling the origin and nature of sediment organic matter in these beaches also regulating bacterial abundances and the frequency of dividing cells.     

Innocent until proven guilty? Stable coexistence of alien rainbow trout and native marble trout in a Slovenian stream

To understand the consequences of the invasion of the nonnative rainbow trout Oncorhynchus mykiss on the native marble trout Salmo marmoratus, we compared two distinct headwater sectors where marble trout occur in allopatry (MTa) or sympatry (MTs) with rainbow trout (RTs) in the Idrijca River (Slovenia). Using data from field surveys from 2002 to 2009, with biannual (June and September) sampling and tagging from June 2004 onwards, we analyzed body growth and survival probabilities of marble trout in each stream sector. Density of age-0 in September over the study period was greater for MTs than MTa and very similar between MTs and RTs, while density of trout ≥age-1 was similar for MTa and MTs and greater than density of RTs. Monthly apparent survival probabilities were slightly higher in MTa than in MTs, while RTs showed a lower survival than MTs. Mean weight of marble and rainbow trout aged 0+ in September was negatively related to cohort density for both marble and rainbow trout, but the relationship was not significantly different between MTs and MTa. No clear depression of body growth of sympatric marble trout between sampling intervals was observed. Despite a later emergence, mean weight of RTs cohorts at age 0+ in September was significantly higher than weight of both MTs and MTa. The establishment of a self-sustaining population of rainbow trout does not have a significant impact on body growth and survival probabilities of sympatric marble trout. The numerical dominance of rainbow trout in streams at lower altitudes seem to suggest that while the low summer flow pattern of Slovenian streams is favorable for rainbow trout invasion, the adaptation of marble trout to headwater environments may limit the invasion success of rainbow trout in headwaters.     

Overexploitation of karst spring as a measure against water scarcity

Water scarcity, especially in the hydrologically critical part of the year, is a problem often present in many cities and regions, particularly in arid and sub-arid areas. Climate change and human water demand compound the problem. This paper discusses a climate change adaptation measure—the possibility of karst spring overexploitation, where there is a siphon-shaped cavity inside the mountain. The pilot area is near the city of Ni?, where a decreasing precipitation trend has already been observed and is expected to continue in the future. The paper also presents some basic information related to the pilot area and undertaken investigations. The project, successfully implemented in 2004, has provided the city of Ni? with an additional amount of 200 l/s of spring water during the most critical part of the year.     

Meio- and macrofauna communities in three sandy beaches of the northern Adriatic Sea protected by artificial reefs

Interactions between meio- and macrofaunal assemblages and food availability were investigated in relation to tourism pressures on three beaches of the northern Adriatic Sea. All beaches were characterised by the presence of artificial reefs, freshwater inputs and tourism pressures. Beach sediments displayed high organic loads and low protein and chlorophyll a contributions to the bulk of the organic matter. Consequently, the organic matter was of mostly refractory composition and, thus, of scarce nutritional quality. Macrofaunal community structure and biomass were related to the quantity and nutritional quality of sedimentary organic matter, whereas meiofauna was apparently not. No relationships were found between physical variables and the metazoan communities. Most likely, the presence of artificial reefs reduced the physical impact of waves on the beach assemblages, whereas the presence of synergistic human impacts, including freshwater inputs and the tourism pressure, negatively influenced both the meio- and the macrofaunal assemblages.