Prenatal diagnosis using deletion studies in Duchenne muscular dystrophy

Accurate carrier testing and prenatal diagnosis in Duchenne muscular dystrophy (DMD) families is facilitated when an Xp21 deletion is found to be segregating within a family. We discuss the results of the DNA testing in two families, one in which DNA from affected males was available for study and the other in which no DNA from an affected male was available. Factors complicating the counselling of DMD deletion families are outlined.     

Mineral contents and proximate composition of Pistacia vera kernels

The mineral contents of Pistacia vera kernels were determined by inductively coupled plasma-atomic emission spectroscopy (ICP-AES). The minimum and maximum values of K, P, Ca, Mg, and S elements ranged from 6,333 to 8,064 mg/kg, 3,630 to 5,228 mg/kg, 1,614 to 3,226 mg/kg, 1,716 to 2,402 mg/kg, and 1,417 to 1,825 mg/kg, respectively. In addition, the mean values of Fe, Zn, Cu, Mn, B, Mo, Cr and Ni elements were determined as 42.48, 20.52, 12.81, 7.48, 11.31, 0.106, 0.511 and 1.67 mg/kg, respectively. Ash levels of kernels were found between 2.28 % (Urfa) and 2.79 % (Halebi). In addition, crude oil and protein contents were determined between 48.8 % (Halebi) to 55.3 % (Siirt) and 23.33 % (Uzun) to 27.16 % (Halebi), respectively.     

A study on the arsenic concentration in groundwater of a coastal aquifer in south-east India: an integrated approach

The occurrence of arsenic in drinking water and its detrimental effects have drawn much attention in recent years. Several studies have been conducted in the deltaic plains of River Ganga, NE part of the India, and in other countries, but no systematic study was conducted in South India on occurrence of arsenic in groundwater. The main aim of this study is to determine the level of arsenic in groundwater and to understand the relation with other geochemical parameters of groundwater in the south-eastern coastal aquifer at Kalpakkam region, India. This region is represented by three different lithologies, viz. charnockites, flood plain alluvium and marine alluvium. Twenty-nine representative samples of groundwater were collected and analysed for major ions, metals and isotopes such as ²H and ¹⁸O. In addition, geophysical method was also attempted to understand the subsurface condition. The spatial variation in arsenic (As) indicates that higher concentration was observed around the landfill sites and irrigated regions, which was supported by geochemical, statistical and isotopic inferences. The variation in the As with depth, lithology and sources has been clearly brought out. Though the values of As does not exceed the drinking water permissible limit (10 mg/l), it has reached a near permissible level of 8.7 ppb. Hence, it is essential to understand the geochemical behaviour of As for a proper future management of the water resource in the study area.     

Aquatic biomonitoring of Giardia cysts and Cryptosporidium oocysts in peninsular Malaysia

An aquatic biomonitoring of Giardia cysts and Cryptosporidium oocysts in river water corresponding to five villages situated in three states in peninsular Malaysia was determined. There were 51.3 % (20/39) and 23.1 % (9/39) samples positive for Giardia and Cryptosporidium (oo)cysts, respectively. Overall mean concentration between villages for Giardia cysts ranged from 0.10 to 25.80 cysts/l whilst Cryptosporidium oocysts ranged from 0.10 to 0.90 oocysts/l. Detailed results of the river samples from five villages indicated that Kuala Pangsun 100 % (9/9), Kemensah 77.8 % (7/9), Pos Piah 33.3 % (3/9) and Paya Lebar 33.3 % (1/3) were contaminated with Giardia cysts whilst Cryptosporidium (oo)cysts were only detected in Kemensah (100 %; 9/9) and Kuala Pangsun (66.6 %; 6/9). However, the water samples from Bentong were all negative for these waterborne parasites. Samples were collected from lower point, midpoint and upper point. Midpoint refers to the section of the river where the studied communities are highly populated. Meanwhile, the position of the lower point is at least 2 km southward of the midpoint and upper point is at least 2 km northward of the midpoint. The highest mean concentration for (oo)cysts was found at the lower points [3.15?±?6.09 (oo)cysts/l], followed by midpoints [0.66?±?1.10 (oo)cysts/l] and upper points [0.66?±?0.92 (oo)cysts/l]. The mean concentration of Giardia cysts was highest at Kuala Pangsun (i.e. 5.97?±?7.0 cysts/l), followed by Kemensah (0.83?±?0.81 cysts/l), Pos Piah (0.20?±?0.35 cysts/l) and Paya Lebar (0.10?±?0.19 cysts/l). On the other hand, the mean concentration of Cryptosporidium oocysts was higher at Kemensah (0.31?±?0.19 cysts/l) compared to Kuala Pangsun (0.03?±?0.03cysts/l). All the physical and chemical parameters did not show significant correlation with both protozoa. In future, viability status and molecular characterisation of Giardia and Cryptosporidium should be applied to identify species and genotypes/subgenotypes for better understanding of the epidemiology of these waterborne parasites.     

Alfalfa rapidly remediates excess inorganic nitrogen at a fertilizer spill site

By 19%, standard remediation techniques had significantly reduced the concentration of nitrate nitrogen (NO3- -N) in local ground water at the site of a 1989 anhydrous ammonia spill, but NO3- -N concentrations in portions of the site still exceeded the public drinking water standard. Our objective was to determine whether local soil and ground water quality could be improved with alfalfa (Medicago sativa L.). A 3-yr study was conducted in replicated plots (24 by 30 m) located hydrologically upgradient of the ground water under the spill site. Three alfalfa entries ['Agate', Ineffective Agate (a non-N2-fixing elite germplasm similar to Agate), and MWNC-4 (an experimental germplasm)] were seeded in the spring of 1996. Corn (Zea mays L.) or wheat (Triticum aestivum L.) was seeded adjacent to the alfalfa each year. Crops were irrigated with N-containing ground water to meet water demand. During the 3-yr period, about 540 kg of inorganic N was removed from the aquifer through irrigation of 4.9 million L water. Cumulative N removal from the site over 3 yr was 972 kg N ha(-1) in Ineffective Agate alfalfa hay, compared with 287 kg N ha(-1) for the annual cereal grain. Soil solution NO3- concentrations were reduced to low and stable levels by alfalfa, but were more variable under the annual crops. Ground water quality improved, as evidenced by irrigation water N concentration. We do not know how much N was removed by the N2-fixing alfalfas, but it appears that either fixing or non-N2-fixing alfalfa will effectively remove inorganic N from N-affected sites.     

LABORATORY EXPERIMENTS AS AN AID TO LAKE RESTORATION DECISIONMAKING1

ABSTRACT: The choice of a lake rehabilitation technique can be assisted by laboratory experiments concerned with the composition and properties of the sediments. This work on Sawgrass Lake, Pinellas County, Florida, provides an example of the type of laboratory information that can be useful towards making decisions regarding the most effective restorative techniques. Experiments include chemical analysis of sediment (water content, organic content, pesticides, nutrients), rate of sediment compaction and rehydration at ambient conditions, and the effect of treatment with alum and other chemicals.     

Study on the hydrogeochemical characteristics in groundwater, post- and pre-tsunami scenario, from Portnova to Pumpuhar, southeast coast of India

Natural hazards cause great damage to humankind and the surrounding ecosystem. They can cast certain indelible changes on the natural system. One such tsunami event occurred on 26 December 2004 and caused serious damage to the environment, including deterioration of groundwater quality. This study addresses the groundwater quality variation before and after the tsunami from Pumpuhar to Portnova in Tamil Nadu coast using geochemical methods. As a part of a separate Ph.D. study on the salinity of groundwater from Pondicherry to Velankanni, water quality of this region was studied with the collection of samples during November 2004, which indicated that shallow aquifers were not contaminated by sea water in certain locations. These locations were targeted for post-tsunami sample collection during the months of January, March and August 2005 from shallow aquifers. Significant physical mixing (confirmed with mixing models) within the aquifer occurred during January 2005, followed by precipitation of salts in March and complete leaching and dissolution of these salts in the post-monsoon season of August. As a result, maximum impact of tsunami water was observed in August after the onset of monsoon. Tsunami water inundated inland water bodies and topographic lows where it remained stagnant, especially in the near-shore regions. Maximum tsunami inundation occurred along the fluvial distributary channels, and it was accelerated by topography to a certain extent where the southern part of the study area has a gentler bathymetry than the north.     

Climatic and genetic controls of yields of switchgrass, a model bioenergy species

The U.S. Renewable Fuel Standard calls for 136 billion liters of renewable fuels production by 2022. Switchgrass (Panicum virgatum L.) has emerged as a leading candidate to be developed as a bioenergy feedstock. To reach biofuel production goals in a sustainable manner, more information is needed to characterize potential production rates of switchgrass. We used switchgrass yield data and general additive models (GAMs) to model lowland and upland switchgrass yield as nonlinear functions of climate and environmental variables. We used the GAMs and a 39-year climate dataset to assess the spatio-temporal variability in switchgrass yield due to climate variables alone. Variables associated with fertilizer application, genetics, precipitation, and management practices were the most important for explaining variability in switchgrass yield. The relationship of switchgrass yield with climate variables was different for upland than lowland cultivars. The spatio-temporal analysis showed that considerable variability in switchgrass yields can occur due to climate variables alone. The highest switchgrass yields with the lowest variability occurred primarily in the Corn Belt region, suggesting that prime cropland regions are the best suited for a constant and high switchgrass biomass yield. Given that much lignocellulosic feedstock production will likely occur in regions with less suitable climates for agriculture, interannual variability in yields should be expected and incorporated into operational planning.     

Underlying causes of habitat-associated differences in size of age-0 walleye pollock (Theragra chalcogramma) in the Gulf of Alaska

Age-0 walleye pollock (Theragra chalcogramma) caught in September in the Gulf of Alaska display habitat-associated differences in standard length (SL). Age-0 fish collected in the region around Sutwik Island and 375?km farther downstream near the Shumagin Islands most likely originate from the Shelikof Strait spawning aggregation. However, age-0 fish resulting from the same spawning aggregation differ in mean size up to 20?mm between areas by September. We examined the otoliths of the larval and age-0 stages of walleye pollock from these two areas in 2000 and 2001 to determine whether growth rate, hatch date, and/or temperature influenced fish size. Circulation models were used to determine whether transport of larvae from an upstream spawning group into the study areas could have occurred. Mean in situ temperature during sampling periods was not defined as a significant factor in altering growth rates. Overlapping hatch date distributions of the larval and age-0 fish in the Shumagin Island area confirmed that the fish were from the Shelikof Strait spawning group. Comparison of hatch date distributions in the upstream Sutwik Island area revealed larger/older larvae from an upstream spawning group mixed with larvae from the Shelikof Strait spawning group. Our results suggest that the offset of 20?mm SL between the groups of age-0 pollock was the result of a combination of enhanced survivorship of early-hatched larvae in the Sutwik area and the introduction and retention of the progeny of another spawning group originating upstream of Shelikof Strait.