Characterization of marker chromosomes by microdissection and fluorescence in situ hybridization

We characterized by microdissection and fluorescence in situ hybridization (FISH) two marker chromosomes: (1) a de novo, acrocentric marker chromosome detected in 88 per cent of the amniotic fluid cells of one of two physically and developmentally normal twins; and (2) a metacentric marker chromosome present in a phenotypically normal female. Analysis of FISH probes developed from the marker chromosomes indicated that the marker chromosomes in cases 1 and 2 were del(14)(q11) and a derivative chromosome from a Robertsonian translocation, respectively. Microdissection in combination with FISH may prove to be a valuable technique in determining the chromosomal origin of de novo marker chromosomes and unbalanced structural rearrangements detected during prenatal diagnosis.     

A Comparison of Corridors and Intrinsic Connectivity to Promote Dispersal in Transient Successional Landscapes

Low-vagility organisms that specialize on transitory successional habitats may be especially dependent upon habitat connectivity to maintain population viability. We analyzed the theoretical intrinsic connectivity of successional landscapes (i.e., the natural juxtaposition of similar habitats that allows dispersal) as a function of patch geometry coupled with the disperser's habitat specificity. Habitat specialists living in poorly connected landscapes (approximating hexagonal patches) have only a 26.5% chance of colonizing a new site when their resident patch becomes unsuitable. In contrast, generalists living in well connected landscapes can virtually always colonize a new site when needed. We infer from our simulation that for some habitat specialists, such as the rare, endemic Florida scrub lizard (Sceloporus woodi), anthropogenic control of successional dynamics for commercial logging may significantly reduce intrinsic connectivity. Lizard population viability may now depend upon the extrinsic connectivity provided by artificial corridors. However, the use of corridors will not serve as a general solution to the problem of anthropogenically reduced intrinsic connectivity until key logistical design problems have been resolved. Moreover, efforts to enhance intrinsic connectivity by modifying patch geometry may produce undesirable edge effects and conflict with old-growth preservation. Future research should focus on developing spatially explicit corridor models, documenting natural levels of intrinsic connectivity, quantifying anthropogenic disruption of natural connectivity, and describing species-specific mechanisms of inter-patch dispersal.     

Chromated copper arsenate-treated fence posts in the agronomic landscape: soil properties controlling arsenic speciation and spatial distribution

Soils adjacent to chromated copper arsenate (CCA)-treated fence posts along a fence line transecting different soil series, parent material, drainage classes, and slope were used to determine which soil properties had the most influence on As spatial distribution and speciation. Metal distribution was evaluated at macroscopic (total metal concentration contour maps) and microscopic scales (micro-synchrotron X-ray fluorescence maps), As speciation was determined using extended X-ray absorption fine structure spectroscopy, and redox status and a myriad of other basic soil properties were elucidated. All geochemical parameters measured point to a condition in which the mobilization of As becomes more favorable moving down the topographic gradient, likely resulting through competition (Meh-P, SOM), neutral or slightly basic pH, and redox conditions that are favorable for As mobilization (higher Fe(II) and total-Fe concentrations in water extracts). On the landscape scale, with hundreds of kilometers of fence, the arsenic loading into the soil can be substantial (～8-12 kg km). Although a significant amount of the As is stable, extended use of CCA-treated wood has resulted in elevated As concentrations in the local environment, increasing the risk of exposure and ecosystem perturbation. Therefore, a move toward arsenic-free alternatives in agricultural applications for which it is currently permitted should be considered.     

Challenges in the application of conventional PCB quantitation methods to studies of "invasive" freshwater organisms

We describe significant and unexpected errors in application of a conventional method for the quantitative determination of polychlorinated biphenyls (PCBs) in unusual biological tissue samples. A standard method based upon microwave-assisted extraction (MAE) and gas chromatography tandem mass spectrometry (GC-MS/MS) was applied to a variety of "invasive" freshwater organisms, representing a variety of genera. The 12 "co-planar" PCBs (co-PCBs) were determined at ng g(-1) levels in small samples (ca. 750-1000 mg) of eight freshwater species (n = 172). We found that the conventional method could lead to random and relatively large changes in retention times. A nearly five-fold increase in retention variability was observed for "lower" organisms compared to that observed in the analysis of predatory fish tissue. These unexpected retention time changes would result in misidentifications, and become problematic not only for non-selective detectors such as electron capture but also for MS-based approaches. That is, for electron impact (EI) ionization methods, molecular ions (M(+)) are produced by loss of Cl not only for congeners in the same homolog class but also for fragments of higher homologs (e.g. M - 35 and M - 37), thereby yielding false positive measurement of the target congener when the retention time windows overlap.     

Juvenile Survival in a Population of Neotropical Migrant Birds

Determination of population productivity of Neotropical migrant birds and assessment of breeding habitat quality have been based on population densities and nesting success. Data on juvenile survival improve our estimates of population productivity, provide information on factors during the post-fledging period that affect this productivity and, with comparative data, enable us to better assess breeding habitat quality. We present the first estimate of post-fledging juvenile survival in a population of Neotropical migrant birds. We studied post-fledging survival in a population of Wood Thrush ( Hylocichla mustelina) in southern Missouri, (U.S.) an area hypothesized to contain source populations. Nesting success during our study period was 0.266, and individual survival within the nest was 0.245. Post-fledging survival during the first 8 weeks after fledging was 0.423. Survival varied significantly between post-fledging weekly age classes, with survival of weeks 1, 2, 3, and 4 through 8 being 0.716, 0.930, 0.637, and 1.00, respectively. Probability of predation after fledging was 0.506. Probability of mortality by other causes was 0.071. Probability of predation varied by weekly age class and may have been related to behaviors occurring at different developmental stages. Post-fledging survival was not correlated with nestling mass and did not change throughout the course of the breeding season. Analysis of the source/sink status of the population based on our estimates of nesting success and post-fledging survival indicates that young were being produced below replacement levels during our study period. Large-scale management decisions should take into account potential fluctuations in the productivity of Neotropical migrant populations over time. Data on post-fledging juvenile survival are needed from other populations of Neotropical migrant birds to more accurately assess differential productivity between populations and better assess breeding habitat quality.     

Evaluation of an In Situ,On-Line Purging System for the Cone Penetrometer

Abstract

Materials that will be used to construct an in situ, on-line purging system for the cone penetrometer were evaluated. Transfer efficiencies for volatile organic compounds (VOCs) through stainless steel, nickel, aluminum, and Teflon® tubings were determined using a gas-phase mixture of VOCs containing trichloromethane, tetrachloromethane, 1,1,1- trichloroethane, tetrachloroethene, hexane, benzene, toluene, and 1,2-dimethylbenzene. The water content of the gas stream had an insignificant effect on the quantitative transfer of VOCs through Teflon® tubing but was critical to efficiently transfer the compounds through metal tubing, particularly nickel. Transfer efficiencies for all eight analytes in moist gas streams through stainless steel were greater than 95%. Toluene, tetrachloroethene, and 1,2-dimethylbenzene were transferred with 93%, 81%, and 80% efficiency, respectively, when they were drawn through Teflon® PFA (perfluoroalkoxy) tubing. In general, the retention of the VOCs by Teflon® increases with decreasing aqueous solubility of the analyte. The efficiencies at which VOCs were purged from aqueous standards in Teflon® PFA, Type 304 stainless steel, and glass vessels were similar. Stainless steel was superior to nickel, aluminum, and the Teflon® polymers as a material for an in situ, on-line purging system for the cone penetrometer.     

Identification of dimethylchloroarsine near a former herbicide factory by headspace solid-phase microextraction gas chromatography-mass spectrometry

The application of an improved method based on multidetector gas chromatography to the determination of trace levels of organoarsines in complex matrices is described. The method using headspace-mode solid-phase microextraction (SPME) was applied to a carefully sampled and preserved freshwater sediment core obtained from central Green Bay, Lake Michigan. The sediment core was collected and fractionated in an inert atmosphere. A carboxen/ polydimethylsiloxane-coated SPME fiber (85 microm film thickness) was equilibrated (n = 4) for 60 min at 25 degrees C in the headspace of the sample vessel before introduction to the chromatograph. Conventional quadrupole ion trap mass spectrometry (electron impact ionization), electron capture detection, and pulsed flame photometric detection (arsenic mode) were employed for structure elucidation. A heretofore unidentified species in this region, dimethylchloroarsine (DMCA). was identified. The mass spectrum for DMCA is interpreted based on the observed fragmentation pattern. A bimodal vertical distribution of DMCA in the sediment core sample was observed and its interpretation based on Pb-210 dating is reported.     

A remote in situ monitor based on continuous flow analysis for the quantitation of sub-micromolar levels of hexavalent chromium in natural waters

We describe the design, optimization, and application of a small, lightweight, deployable monitoring instrument for accurately measuring parts-per-billion levels of hexavalent Cr in surface waters at hourly intervals. The monitor quantifies Cr(vi) using a standard molecular absorbance spectroscopic method, i.e. by formation of a complex with 1,5-diphenylcarbazide (DPC). The continuous flow analysis (CFA) design uses narrow conduits (0.90 mm) that are hot-forged onto poly(methyl methacrylate) ('Plexiglas') plates based on the method of Jannasch et al.(Anal. Chem., 1994, 66, 3352). The sample stream is drawn through the manifold at 25 microl min(-1) using a mini-peristaltic pump; osmotic pumps (10 microl h(-1)) are used to continuously inject reagent (2.0 mM DPC, 0.60 M HNO(3), 5.0% w/v acetone, and 0.10% w/v Brij-35) and to periodically introduce quality control standards and a cleaning solution (0.50 M HNO(3)). The 'Z-type' optical cell uses a liquid-core waveguide (10 mm) to collimate the light-emitting diode source beam (lambda(max) 574 nm) to a broadband photodiode detector. Figures of merit are: 7 min cycle time, response within 28 min and clear-down within 31 min, low waste generation (<40 ml d(-1)), detection limit (3sigma) of 48.4 microg l(-1) as Cr(vi) or 0.411 microM as chromic acid, 1.54% relative standard deviation at 100 microg l(-1), and selectivity for dissolved Cr(vi) in authentic surface water samples containing moderate levels (>0.21% w/v) of total particulate matter. Using a test chamber containing Milwaukee Harbor water that was periodically fortified with Cr(vi) standards, continuous testing over a 15 day period (354 h) yielded results that were in excellent agreement (<5% variation) with measurements made using an ICP-MS reference method. Drift in the calibration model over the test period was 1.23% and the variation in a 0.50 mg l(-1) Cr(vi) standard was 3.8%(n= 11). Known interferences to the DPC chemistry (Mo, V, and Hg at >5 mg l(-1)) were undetected in the harbor water by ICP-MS.