Evidence of rich microbial communities in the subsoil of a boreal acid sulphate soil conducive to greenhouse gas emissions

The largest areas of acid sulphate (AS) soils in Europe are located in Finland, where 67,000–130,000 ha of AS soils are in agricultural use. In addition to their acidifying effects on waters, AS soils might be a significant source of greenhouse gases. In this pilot research, carbon and nitrogen content and microbial activity were studied in an AS and a non-AS soil. Large carbon and nitrogen stocks (110 Mg C_org ha^?1 and 15 Mg N_tot ha^?1) as well as high substrate induced respiration (33 μg CO₂–C g^?1h^?1) were found in the C horizons of the AS soil but not in the non-AS soil. High microbial activity in these horizons of the AS soil was further confirmed by the measurement of dehydrogenase activity, basal respiration, the numbers of culturable bacterial cells, and the ratio of culturable to total numbers of cells. Still, the denitrifying enzyme activity was very low in the anaerobic horizons of the AS soil, indicating the prevalence of microbes other than denitrifiers. We suspect that the microbial community originated with the genesis of AS soil and has been supported by the large stocks of accumulated carbon and mineral nitrogen in the C horizons. If these permanently water-saturated subsoils are exposed to oxygen and their microbial activity consequently increases, large carbon and nitrogen stocks are likely to be mobilised, resulting in increased emission of greenhouse gases. Additional studies of boreal AS soils are needed to assess their potential contribution to increases in greenhouse gas fluxes at the local, regional, and global scales.     

Monitoring of ozone effects on the vitality and increment of Norway spruce and European beech in the Central European forests

The ozone effect on Norway spruce (Picea abies (L) Karst.) and European beech (Fagus sylvatica L.) was studied on 48 monitoring plots in 2005-2008. These plots represent two major forest tree species stands of different ages in eight regions of the Czech Republic. The forest conditions were represented by defoliation and the annual radial increment of individual trees. The ozone exposure was assessed by using modeled values of mean annual O(3) concentration and the AOT40 index. The malondialdehyde (MDA) content of the foliage was analysed and used as an indicator of oxidative stress. The correlation analysis showed a significant relation of Norway spruce defoliation to the AOT40 exposure index, and European beech defoliation to the MDA level. The radial increment response to ozone was significant only for the European beech: (a) the correlation analysis showed its decrease with increasing AOT40; (b) the regression model showed its decrease with increasing mean annual ozone concentration only at lower altitudes (<700 m a.s.l.).     

Cover estimation versus density counting in species-rich pasture under different grazing intensities

Two methods for monitoring of grassland vegetation were compared: visual estimation of plant cover (C) and plant densities counting (D). C and D were performed in monthly intervals for three vegetation growing seasons after imposing different grazing regimes on abandoned grassland in 1998. Species scores obtained from paired redundancy analyses (RDA) of C and D data were compared and Spearman's rank correlations were used to show if the two methods give comparable results. Results of C and D were highly correlated in the first two growing seasons only. In the third season, correlation was substantially lower as the sward structure was more heterogeneous due to creation of differently defoliated patches especially under extensive grazing. Presence of the same plant species with different habit in frequently and in infrequently grazed patches, reduced significance of Spearman's rank correlations. Cover estimation can fully substitute plant density counting in grassland with lower proportion of frequently and infrequently grazed patches only, but caution should be used when comparing different management regimes in long term analyses.     

Bacteria transport and deposition under unsaturated conditions: the role of the matrix grain size and the bacteria surface protein

Unsaturated (80% water saturated) packed column experiments were conducted to investigate the influence of grain size distribution and bacteria surface macromolecules on bacteria (Rhodococcus rhodochrous) transport and deposition mechanisms. Three sizes of silica sands were used in these transport experiments, and their median grain sizes were 607, 567, and 330 microm. The amount of retained bacteria increased with decreasing sand size, and most of the deposited bacteria were found adjacent to the column inlet. The deposition profiles were not consistent with predictions based on classical filtration theory. The experimental data could be accurately characterized using a mathematical model that accounted for first-order attachment, detachment, and time and depth-dependent straining processes. Visual observations of the bacteria deposition as well as mathematical modelling indicated that straining was the dominant mechanism of deposition in these sands (78-99.6% of the deposited bacteria), which may have been enhanced due to the tendency of this bacterium to form aggregates. An additional unsaturated experiment was conducted to better deduce the role of bacteria surface macromolecules on attachment and straining processes. In this case, the bacteria surface was treated using a proteolitic enzyme. This technique was assessed by examining the Fourier-transform infrared spectrum and hydrophobicity of untreated and enzyme treated cells. Both of these analytical procedures demonstrated that this enzymatic treatment removed the surface proteins and/or associated macromolecules. Transport and modelling studies conducted with the enzyme treated bacteria, revealed a decrease in attachment, but that straining was not significantly affected by this treatment.     

Expansion of Calamagrostis villosa in sub-alpine Nardus stricta grassland: Cessation of cutting management or high nitrogen deposition?

Calamagrostis villosa has recently expanded in Nardus stricta-dominated sub-alpine grassland of the Giant Mountains (Krkono?e/Karkonosze, the Czech Republic). To investigate whether this expansion has been promoted by high nitrogen deposition or by the cessation of agricultural management, grassland plots dominated by C. villosa were manipulated with four treatments: control (Con), fertilised (Fer), cut (Cut) and cut–fertilised (Cut–Fer). NH₄NO₃ was used at the rate of 30 kg N ha^?1 and fertilisation and cutting were performed once a year after data collection in late July between 2000 and 2006.Plant species composition (analysed by RDA) was significantly influenced by cutting but not by fertilisation. Cutting reduced the cover, biomass, sward height and tiller density of C. villosa. Seedlings of N. stricta and panicles of C. villosa were recorded only in plots with cutting management.To investigate the effect of treatments on the spread of C. villosa, grassland sods dominated by N. stricta were transplanted into the experimental plots. Six years later, the density and cover of C. villosa spreading into the N. stricta sods were highest in Fer treatment.C. villosa was recognised as a defoliation-sensitive species and this sensitivity cannot be overcome by an increase in N supply. Recent expansion of C. villosa in the sub-alpine grassland can by explained by a long-term succession after the cessation of agricultural management and an increase in the N availability in recent decades.     

Colonization of surfaces by phenolic compounds utilizing microorganisms

The aim of the present study is to determine optimal adhesive interaction of phenolic compounds utilizing Candida maltosa and Rhodococcus erythropolis when adhering to kaolin, silicone, synthetic foil (Steriking R40) and fluorinated silicones, comparing cell and support surface hydrophobicity. In parallel, the interfering effect of detergents was investigated. Data obtained show that the less hydrophobic supports display high initial cell adhesion when contacted with the cell type with a lower surface hydrophobicity (yeast cell) but most stable yeast biofilms are those formed on highly hydrophobic fluorinated silicones. On the other hand, support hydrophobicity has no effect on bacterial cell detachment; however, bacterial biofilms are denser when growing on more hydrophobic supports. Both detergents interfere (independently on the cell type) with the early and late phases of biofilm development.