Incorporating evolutionary processes into population viability models

We examined how ecological and evolutionary (eco‐evo) processes in population dynamics could be better integrated into population viability analysis (PVA). Complementary advances in computation and population genomics can be combined into an eco‐evo PVA to offer powerful new approaches to understand the influence of evolutionary processes on population persistence. We developed the mechanistic basis of an eco‐evo PVA using individual‐based models with individual‐level genotype tracking and dynamic genotype–phenotype mapping to model emergent population‐level effects, such as local adaptation and genetic rescue. We then outline how genomics can allow or improve parameter estimation for PVA models by providing genotypic information at large numbers of loci for neutral and functional genome regions. As climate change and other threatening processes increase in rate and scale, eco‐evo PVAs will become essential research tools to evaluate the effects of adaptive potential, evolutionary rescue, and locally adapted traits on persistence.     

Emission Inventories of Carbon-containing Greenhouse Gases in China and Technological Measures for Their Abatement

The report summarizes surveys on carbon inventories and initiatives on sustainable carbon cycling taken by the Research Center for Eco-Environmental Sciences, where the authors work/worked. The first part of the report, which appeared in the preceding issue of this journal, deals with the concept of sustainable carbon cycling, the historic evolution of carbon cycling processes in China, carbon pool enhancement, value addition, carbon sequestration and carbon balance. This very paper, as the second part of the report, covers the results of carbon dynamics modeling, emission inventories of various carbon-containing greenhouse gases and their potential abatement measures.     

Evaluating Habitat as a Surrogate for Population Viability Using a Spatially Explicit Population Model

Because data for conservation planning are always limited, surrogates are often substituted for intractable measurements such as species richness or population viability. We examined the ability of habitat quality to act as a surrogate for population performance for both Red-shouldered Hawks (Buteo lineatus) and Northern Goshawks (Accipiter gentilis). We compared simple measures of habitat quality to estimates of population growth rates obtained from a spatially explicit model of population dynamics. We found that habitat quality was a relatively poor predictor of simulated population growth rates for several reasons. First, a relatively small proportion of the potential habitat for each species served as population sources in our simulations--15% for Red-shouldered Hawks and 2% for Goshawks. Second, when habitat quality correctly predicted demographic sources on the landscape, it consistently underestimated the contribution of these areas to the population. In areas where habitat quality correctly anticipated the presence of demographic sinks, we found no useful quantitative relationship between the two measures. Our simulation model captured the influence of habitat quality on the hawk populations, but it also incorporated interactions between dispersing individuals and landscape patterns. Thus, the discrepancies we observed likely reflected the influence of forest fragmentation and the spatial arrangement of forest patches on the populations. We conclude that simple measures of habitat quality will often be poor surrogates for population persistence, but that spatially explicit population models can help inform the development of better indices.     

Divergence in sink contributions to population persistence

Population sinks present unique conservation challenges. The loss of individuals in sinks can compromise persistence; but conversely, sinks can improve viability by improving connectivity and facilitating the recolonization of vacant sources. To assess the contribution of sinks to regional population persistence of declining populations, we simulated source–sink dynamics for 3 very different endangered species: Black‐capped Vireos (Vireo atricapilla) at Fort Hood, Texas, Ord's kangaroo rats (Dipodomys ordii) in Alberta, and Northern Spotted Owls (Strix occidentalis caurina) in the northwestern United States. We used empirical data from these case studies to parameterize spatially explicit individual‐based models. We then used the models to quantify population abundance and persistence with and without long‐term sinks. The contributions of sink habitats varied widely. Sinks were detrimental, particularly when they functioned as strong sinks with few emigrants in declining populations (e.g., Alberta's Ord's kangaroo rat) and benign in robust populations (e.g., Black‐capped Vireos) when Brown‐headed Cowbird (Molothrus ater) parasitism was controlled. Sinks, including ecological traps, were also crucial in delaying declines when there were few sources (e.g., in Black‐capped Vireo populations with no Cowbird control). Sink contributions were also nuanced. For example, sinks that supported large, variable populations were subject to greater extinction risk (e.g., Northern Spotted Owls). In each of our case studies, new context‐dependent sinks emerged, underscoring the dynamic nature of sources and sinks and the need for frequent re‐assessment. Our results imply that management actions based on assumptions that sink habitats are generally harmful or helpful risk undermining conservation efforts for declining populations.     

Landscape resistance to dispersal: simulating long-term effects of human disturbance on a small and isolated wolf population in southwestern Manitoba, Canada

Landscape fragmentation affects wildlife population viability, in part, through the effects it has on individual dispersal. In addition, some forms of human disturbance impinge on dispersal without physically fragmenting habitats. Here, we use the term "landscape resistance" to capture constraints to dispersal that cannot be linked directly to fragmentation. The extent to which landscape resistance can influence population persistence is not well understood. Agricultural development over the past 60?years has resulted in considerable habitat fragmentation in the Riding Mountain National Park (RMNP) region in southwestern Manitoba, Canada. We examined how park boundaries, roads outside park boundaries and negative human attitudes have altered dispersal success and population persistence. We examined whether stochastic disturbance, representing infectious disease epidemics, further reduced long-term population persistence for various scenarios. Finally, we assessed whether the simultaneous occurrence of the three features had additive effects. We simulated dispersal using HexSim, a spatially explicit individual-based population model, parameterised with data on wolves (Canis lupus) in the RMNP region. Simulations that separately accounted for negative human attitudes and roads outside the park boundaries exhibited lower mean population size than those that ignored these details. Increasing deflection from park boundaries did not appear to have significant impacts. Our results did not indicate the presence of additive effects, and scenarios incorporating all three features had similar results as that of roads. Stochastic disturbance further reduced mean population size. Our results do illustrate how less-visible human disturbances (i.e. those that do not clearly alter landscape characteristics) can significantly limit dispersal and population persistence.     

A multispecies test of source–sink indicators to prioritize habitat for declining populations

For species at risk of decline or extinction in source–sink systems, sources are an obvious target for habitat protection actions. However, the way in which source habitats are identified and prioritized can reduce the effectiveness of conservation actions. Although sources and sinks are conceptually defined using both demographic and movement criteria, simplifications are often required in systems with limited data. To assess the conservation outcomes of alternative source metrics and resulting prioritizations, we simulated population dynamics and extinction risk for 3 endangered species. Using empirically based habitat population models, we linked habitat maps with measured site‐ or habitat‐specific demographic conditions, movement abilities, and behaviors. We calculated source–sink metrics over a range of periods of data collection and prioritized consistently high‐output sources for conservation. We then tested whether prioritized patches identified the habitats that most affected persistence by removing them and measuring the population response. Conservation decisions based on different source–sink metrics and durations of data collection affected species persistence. Shorter time series obscured the ability of metrics to identify influential habitats, particularly in temporally variable and slowly declining populations. Data‐rich source–sink metrics that included both demography and movement information did not always identify the habitats with the greatest influence on extinction risk. In some declining populations, patch abundance better predicted influential habitats for short‐term regional persistence. Because source–sink metrics (i.e., births minus deaths; births and immigrations minus deaths and emigration) describe net population conditions and cancel out gross population counts, they may not adequately identify influential habitats in declining populations. For many nonequilibrium populations, new metrics that maintain the counts of individual births, deaths, and movement may provide additional insight into habitats that most influence persistence.     

Circuit-theory applications to connectivity science and conservation

Conservation practitioners have long recognized ecological connectivity as a global priority for preserving biodiversity and ecosystem function. In the early years of conservation science, ecologists extended principles of island biogeography to assess connectivity based on source patch proximity and other metrics derived from binary maps of habitat. From 2006 to 2008, the late Brad McRae introduced circuit theory as an alternative approach to model gene flow and the dispersal or movement routes of organisms. He posited concepts and metrics from electrical circuit theory as a robust way to quantify movement across multiple possible paths in a landscape, not just a single least-cost path or corridor. Circuit theory offers many theoretical, conceptual, and practical linkages to conservation science. We reviewed 459 recent studies citing circuit theory or the open-source software Circuitscape. We focused on applications of circuit theory to the science and practice of connectivity conservation, including topics in landscape and population genetics, movement and dispersal paths of organisms, anthropogenic barriers to connectivity, fire behavior, water flow, and ecosystem services. Circuit theory is likely to have an effect on conservation science and practitioners through improved insights into landscape dynamics, animal movement, and habitat-use studies and through the development of new software tools for data analysis and visualization. The influence of circuit theory on conservation comes from the theoretical basis and elegance of the approach and the powerful collaborations and active user community that have emerged. Circuit theory provides a springboard for ecological understanding and will remain an important conservation tool for researchers and practitioners around the globe.     

Modeling joint production of wildlife and timber

Production of marketed commodities and protection of natural systems often conflict. A focus on only one goal can result in large losses in other goals and may result in inefficient and unsustainable outcomes. In this paper, we develop a method that combines economic and ecological models in a dynamic and spatial analysis to evaluate land use decisions and find cost-effective alternatives for which it is not possible to do better on one objective without harming another objective. The method is demonstrated using timber production and species conservation on a forested landscape over a 100-year planning horizon. Current land use strategies are simulated and compared with cost-effective alternatives. The approach is compared to a static reserve approach, similar to previous studies, and found to produce substantially more efficient management strategies for the case study landscape.