Characteristics of microorganisms isolated from technogenic soils of the Kama region

Microorganisms capable of degrading monocyclic and polycyclic aromatic hydrocarbons and several chlorinated aromatic compounds were isolated from soils polluted with industrial waste from chemical plants. They were identified as representatives of the genera Pseudomonas, Flavobacterium, Alcaligenes, Rhodococcus, Microbacterium, Cellulomonas, Arthrobacter, and Brevibacterium. Among them, bacteria capable of utilizing xenobiotics in a wide range of ambient temperatures and pH and in the presence of high sodium chloride concentrations were revealed.     

Changes in soil microbiota under the effect of acrylonitrile in a model experiment

A laboratory experiment was performed to evaluate the effect of acrylonitrile (20, 200, and 2000 mg/kg soil) on the abundance and structure of soil microbial community. The results of direct inoculation showed that acrylonitrile at 200 mg/kg stimulated the development of nitrile-utilizing prokaryotes, whereas at 2000 mg/kg it inhibited all test groups of microorganisms, including nitrile- and amide-utilizing bacteria. According to real-time PCR data, representatives of α- and ß-Proteobacteria were the most labile members of the soil microbial community, while Bacteroidetes and Fungi proved to be highly resistant to the effect of the pollutant.     

Effect of Flavonoids on the Ecology of Enterobacteria

The effect of flavonoids, natural plant metabolites, on the growth and viability of enterobacteria was studied using S. typhimurium and E. coli strains defective in some components of the DNA repair system. The minimal inhibitory concentrations of several flavonoids were measured. These agents were shown to have a weak bactericidal and a marked bacteriostatic effect, the latter increasing under anaerobic conditions. It is proposed that the mechanism of the bacteriostatic action of flavonoids is based on topoisomerase II inhibition. On the basis of these results, the ability of flavonoids to differentially suppress bacterial growth and their probable influence on the ecology of microorganisms (the formation, species composition, and ecological balance of natural microbial communities) are discussed.     

Biological diversity of nitrile-metabolizing bacteria in soils of the Perm region affected by human activities

The diversity of bacteria metabolizing nitriles of carbonic acids was studied in soils of the Perm region affected by human activities. Effective methods for selective isolation of cultures possessing the nitrile hydratase and nitrilase activities were developed. Most microorganisms capable of utilizing nitriles were Grampositive Nocardia-like bacteria of the genus Rhodococcus. Isolates with a detectable nitrilase activity were also represented by Gram-negative forms (Gram-negative aerobic/microaerophilic bacilli and cocci of the genera Pseudomonas, Azomonas, Azotobacter, and Acidovorax). Two enzyme systems for nitrile hydrolysis were found in 27% of cultures. The nitrile hydratase and nitrilase activities of the studied strains exceeded these enzymatic activities in bacteria isolated from native soils, which indicates that natural selection of saprophytic microflora occurs in chemically altered soils.     

Aerobic spore-forming bacteria from the region of salt mining

Seven strains of Gram-positive microorganisms capable of forming endospores have been isolated from soils of the region of potassium salt mining (Berezniki, Perm krai) by the method of enrichment cultures. Their typing by means of REP- and BOX-PCR has shown that four strains—I23 (= VKM V-2504), I26 (= VKM V-2505), I27, and I28—are of the same genogroup (type I), while strains SN501 (= VKM V-2508), I10b (= VKM V-2507), and I12b (= VKM V-2506) represent three different genogroups (types II, III, and IV, respectively). A phylogenetic analysis of 16S rRNA gene sequences has shown that strains I10b and SN501 belong to the genus Paenibacillus, and the remaining strains, to the genus Bacillus. These bacteria are tolerant of high salinity and alkalinity: they can grow at pH 7.0–9.0 and NaCl content of 90–110 g/l in the culture medium. They are also capable of utilizing diesel fuel and individual aromatic and aliphatic hydrocarbons.     

Halotolerant bacteria of the genus <Emphasis Type="Italic">Arthrobacter</Emphasis> degrading polycyclic aromatic hydrocarbons

Eight strains of bacteria capable of degrading polycyclic aromatic hydrocarbons have been isolated from soils and bottom sediments sampled in the region of Verkhnekamskoe potash deposit (Berezniki, Perm krai) and classified with the genus Arthrobacter on the basis of phylogenetic analysis (16S rRNA genes) and morphological and chemotaxonomic characters. According to the results of 16S rDNA sequence alignment, strains B905, SMB11, SMB145, SF27, and DF14 show the highest sequence homology to the type strain of A. crystallopoietes (99.7%), and strain SN17, to the type strain of A. arilaitensis (99.8%). The isolated strains are capable of growing on naphthalene and phenanthrene (as the sole sources of carbon and energy) in the presence of 60 mg/l NaCl. Their cells contain large plasmids ranging in size from 85 to 130 kb. Plasmid elimination from Arthrobacter sp. SF27 has proved to result in the loss of capacity for growing on naphthalene and phenanthrene, suggesting a plasmid localization of genes responsible for degradation of these compounds.