Molecular phylogeny and population structure of tideland snails in the genus Cerithidea around Japan

Phylogenetic relationships and genetic population structures were analyzed for tideland gastropods in the genus Cerithidea around Japan on the basis of partial sequence of the mitochondrial COI gene. Large genetic divergence was shown between individuals of Cerithidea cingulata in the southern Ryukyus and those in the central Ryukyus and the Japanese Islands. Haplotypes of C. cingulata from the Japanese Islands were paraphyletic with the exclusion of a monophyletic group from the central Ryukyus. Genetic differentiation of C. cingulata was also detected between Amami-Oshima Island and Okinawajima Island. No genetic divergence was found between Cerithidea rhizophorarum in the Japanese Islands and its subspecies C. rhizophorarum morchii in the Ryukyu Islands. The lack of genetic divergence of Cerithidea largillierti between continental China and Japan suggests relatively recent migration between the Japanese Islands and the Asian continent. For all three Cerithidea species distributed in both the Japanese Islands and the Ryukyu Islands, the Tokara Gap and the Kerama Gap were shown to have acted as barriers to the dispersal.     

Assessing the effects of severe rainstorm-induced mixing on a subtropical,subalpine lake

Severe rainstorms cause vertical mixing that modifies the internal dynamics (e.g., internal seiche, thermal structure, and velocity filed) in warm polymictic lakes. Yuan Yang Lake (YYL), a subtropical, subalpine, and seasonally stratified small lake in the north-central region of Taiwan, is normally affected by typhoons accompanied with strong wind and heavy rainfall during the summer and fall. In this study, we used the field data, statistical analysis, spectral analysis, and numerical modeling to investigate severe rainstorm-induced mixing in the lake. Statistical determination of the key meteorological and environmental conditions underlying the observed vertical mixing suggests that the vertical mixing, caused by heat loss during severe rainstorms, was likely larger than wind-induced mixing and that high inflow discharge strongly increased heat loss through advection heat. Spectral analysis revealed that internal seiches at the basin scale occurred under non-rainstorm meteorological conditions and that the internal seiches under the rainstorm were modified on the increase of the internal seiche frequencies. Based upon observed frequencies of the internal seiches, a two-dimensional model was simulated and then appropriate velocity patterns of the internal seiches were determined under non-rainstorm conditions. Moreover, the model implemented with inflow boundary condition was conducted for rainstorm events. The model results showed that the severe rainstorms promoted thermal destratification and changed vertical circulation of the basin-scale, internal seiche motion into riverine flow.     

The earliest record of birch mice from the Early Miocene Nei Mongol,China

The earliest species of birch mouse, Sicista primus sp. nov., was recovered from the 17-Ma-old (Early Miocene) Gashunyinadege locality, central Nei Mongol, China. It is ~9 Ma older than the previous first appearance datum of Sicista in Eurasia. This study indicates that North American Macrognathomys is a synonym of Eurasian Sicista, having 12 shared dental characters. As a result, the biogeography of dipodids indicates that Asian Sicista dispersed to North America as opposed to the hypothesis that Sicista originated from the North American clade. Sicista is one of the few extant rodent genera that originated as early as the Early Miocene.     

Initial design process of the sustainability science ontology for knowledge-sharing to support co-deliberation

Implementation of the sustainability science (SS) approach is often difficult because of poor communication between experts from different academic fields. We focused on ontology engineering as a method of knowledge structuring that supports the co-deliberation process. However, SS is too broad for a few experts to construct an ontology because SS targets and covers almost all existing research fields from the viewpoint of problem-solving. The N-iteration process is required for completing an SS ontology. In the present paper, we discuss the initial design process for constructing an ontology on SS from the aspect of a knowledge-sharing tool to support co-deliberation. First, we identified the SS ontology by referring to the existing literature. Second, we traced the structuring process of the SS ontology, which is independent of the existing research domain. Third, we compared the SS ontology with existing ontologies or concept structures on SS. Fourth, we assessed the SS ontology produced in the initial process in terms of relevance and coverage and addressed areas for improvement in order to facilitate co-deliberation among researchers from different domains. As a result of developing the SS ontology and applying it to the mapping tool that we developed based on the ontology, we found the following three points: the SS ontology enables us to define concepts relevant to SS without overlapping by distinguishing part-of and attribute-of relationships at the upper level of the ontology; the SS-based mapping tool successfully represents the potential countermeasures required by the targeted problem for all scientific fields except experimental engineering; however, the SS ontology requires further improvement in order to represent the conceptual linkage arising from compound and secondary problems and the fulfillment of classes at the lower hierarchy of Shortage problem, and requires slots for the entire hierarchy. In addition, based on the discussion of the areas for improvement, we found that missing slots and classes should be added in the process in which we use or improve tools corresponding to a variety of requirements for supporting co-deliberation. In this way, we are able to propose an incremental process for constructing the SS ontology from the aspect of a knowledge-sharing tool to support co-deliberation.     

Evaluation of environmental feasibility of steel pipe sheet pile cutoff wall at coastal landfill sites

An evaluation method that can express the local leakage of leachate from joint sections in steel pipe sheet pile (SPSP) cutoff walls is discussed in this study. In particular, the evaluation of environmental feasibility (containment of leachates containing toxic substances) considering a three-dimensional arrangement and hydraulic conductivity distribution of the joint sections in the SPSP cutoff wall is compared with an evaluation that uses the equivalent hydraulic conductivity. This equivalent hydraulic conductivity assumes that the joint section and the steel pipe are integrated; therefore, the hydraulic conductivity is substituted with a uniform permeable layer. However, in an evaluation that employs the equivalent hydraulic conductivity, it is difficult to consider the local leakage of leachate containing toxic substances from the joint sections in the SPSP cutoff wall. It was established that evaluations of the environmental feasibility of SPSP cutoff walls with joint sections must take into account the local leakage of leachates containing toxic substances from the joint sections. Also, it was clarified that technologies that lower the hydraulic conductivities of joint sections in SPSP cutoff walls and also facilitate the use of sparser joint arrangements contribute significantly to increasing the environmental feasibility of SPSP cutoff walls at landfill sites.     

A new condensed toluene mechanism for Carbon Bond: CB05-TU

Toluene is ubiquitous in urban atmospheres and is a precursor to tropospheric ozone and aerosol (smog). An important characteristic of toluene chemistry is the tendency of some degradation products (e.g., cresols and methyl-catechols) to form organic nitro and nitrate compounds that sequester NOx (NO and NO₂) from active participation in smog formation. Explaining the NOx sinks in toluene degradation has made mechanism development more difficult for toluene than for many other organic compounds. Another challenge for toluene is explaining sources of radicals early in the degradation process. This paper describes the development of a new condensed toluene mechanism consisting of 26 reactions, and evaluates the performance of CB05 with this new toluene scheme (Toluene Update, TU) against 38 chamber experiments at 7 different environmental chambers, and provides recommendations for future developments. CB05 with the current toluene mechanism (CB05-Base) under-predicted the maximum O₃ and O₃ production rate for many of these toluene–NOx chamber experiments, especially under low-NOx conditions ([NOx]_t=0 < 100 ppb). CB05 with the new toluene mechanism (CB05-TU) includes changes to the yields and reactions of cresols and ring-opening products, and showed better performance than CB05-Base in predicting the maximum O₃, O₃ formation rate, NOx removal rate and cresol concentration. Additional environmental chamber simulations with xylene–NOx experiments showed that the TU mechanism updates tended to improve mechanism performance for xylene.     

Particle release transport in Danshuei River estuarine system and adjacent coastal ocean: a modeling assessment

A three-dimensional hydrodynamic model was created to study the Danshuei River estuarine system and adjacent coastal ocean in Taiwan. The model was verified using measurements of the time-series water surface elevation, tidal current, and salinity from 1999. We conclude that our model is consistent with these observations. Our particle-tracking model was also used to explore the transport of particles released from the Hsin-Hai Bridge, an area that is heavily polluted. The results suggest that it takes a much longer time for the estuary to be flushed out under low freshwater discharge conditions than with high freshwater discharge. We conclude that the northeast and southwest winds minimally impact particle dispersion in the estuary. The particles fail to settle to the bottom in the absence of density-induced circulation. Our model was also used to simulate the ocean outfall at the Bali. Our experimental results suggest that the tidal current dominates the particle trajectories and influences the transport properties in the absence of a wind stress condition. The particles tend to move northeast or southwest along the coast when northeast or southwest winds prevail. Our data suggest that wind-driven currents and tidal currents play important roles in water movement as linked with ocean outfall in the context of the Danshuei River.     

Hydrodynamic and towing characteristics of a modified model of the Clarke Jet Net

In a series of studies to develop an effective high speed plankton sampler, hydrodynamic research was carried out on a modified model of the Clarke Jet Net. A theoretical analysis of the motion of the sampler was made using an IBM 7040 computer, and test tows were made in an experimental ship tank and at sea. To maintain the roll angle of the sampler at approximately zero, a v-shape bridle was applied. A pair of towing holes should be selected for the particular range of towing velocity. The calculated longitudinal stability seemed good in all the cases examined. Towing tests in the ship tank at 2 to 3 m/sec revealed sufficient stability. The motion of the sampler at speeds higher than 3 m/sec can be assumed from hydrodynamic coefficients derived from the ship tank experiment. Towing-cable characteristics, assumed by computation, indicated that about 500 m at 6 kt and 1,000 m at 12 kt should be paid out to lower the sampler down to 100 m. The effect of the sampler on the cable is found only adjacent to it and is almost negligible beyond 50 m from it in depth. Results of sea tests at 6 and 9 kt confirmed the stability of the sampler. Examination of the catch suggested that the present model can be used, with some modifications, for the quantitative and qualitative sampling of large zooplankton.Contribution No. 231 from the Seikai Regional Fisheries Research Laboratory, Nagasaki.     

Effects of land use data on dry deposition in a regional photochemical model for eastern Texas

Land use data are among the inputs used to determine dry deposition velocities for photochemical grid models such as the Comprehensive Air Quality Model with extensions (CAMx) that is currently used for attainment demonstrations and air quality planning by the state of Texas. The sensitivity of dry deposition and O3 mixing ratios to land use classification was investigated by comparing predictions based on default U.S. Geological Survey (USGS) land use data to predictions based on recently compiled land use data that were collected to improve biogenic emissions estimates. Dry deposition of O3 decreased throughout much of eastern Texas, especially in urban areas, with the new land use data. Predicted 1-hr averaged O3 mixing ratios with the new land use data were as much as 11 ppbv greater and 6 ppbv less than predictions based on USGS land use data during the late afternoon. In addition, the area with peak O3 mixing ratios in excess of 100 ppbv increased significantly in urban areas when deposition velocities were calculated based on the new land use data. Finally, more detailed data on land use within urban areas resulted in peak changes in O3 mixing ratios of approximately 2 ppbv. These results indicate the importance of establishing accurate, internally consistent land use data for photochemical modeling in urban areas in Texas. They also indicate the need for field validation of deposition rates in areas experiencing changing land use patterns, such as during urban reforestation programs or residential and commercial development.