Effects of fine particulate matter and its constituents on emergency room visits for asthma in southern Taiwan during 2008–2010: a population-based study

Environmental Science and Pollution Research - This population-based study evaluated the short-term association between fine particulate matter (PM2.5) concentrations and its constituents and...     

Design and use of group-specific primers and probes for real-time quantitative PCR

Real-time quantitative polymerase chain reaction (qPCR) has gained popularity as a technique to detect and quantify a specific group of target microorganisms from various environmental samples including soil, water, sediments, and sludge. Although qPCR is a very useful technique for nucleic acid quantification, accurately quantifying the target microbial group strongly depends on the quality of the primer and probe used. Many aspects of conducting qPCR assays have become increasingly routine and automated; however, one of the most important aspects, designing and selecting primer and probe sets, is often a somewhat arcane process. In many cases, failed or non-specific amplification can be attributed to improperly designed primer-probe sets. This paper is intended to provide guidelines and general principles for designing group-specific primers and probes for qPCR assays. We demonstrate the effectiveness of these guidelines by reviewing the use of qPCR to study anaerobic processes and biologic nutrient removal processes. qPCR assays using group-specific primers and probes designed with this method, have been used to successfully quantify 16S ribosomal Ribonucleic Acid (16S rRNA) gene copy numbers from target methanogenic and ammonia-oxidizing bacteria in various laboratory- and full-scale biologic processes. Researchers with a good command of primer and probe design can use qPCR as a valuable tool to study biodiversity and to develop more efficient control strategies for biologic processes.     

Effects of sedimentation on the gorgonian <Emphasis Type="Italic">Subergorgia suberosa</Emphasis> (Pallas, 1766)

Effects of oceanic and terrestrial sediment suspensions on the behavioral traits activity, colony expansion, and mucus formation of the gorgonian octocoral Subergorgia suberosa (Pallas, 1766) were studied in the laboratory. Increased sediment concentration significantly changed the logits of activity indices (as colony expansion) and was correlated with decreased activity. For both sources of sediments, the activity index decreased as the concentration of sediment increased. The level of decrease was more significance for terrestrial sediments. The activity index showed no clear time pattern for the control group, but a decrease over time occurred in both sediment treatment groups. Activity change was linearly correlated with exposure time and concentration of terrestrial and ocean sediments. The activity indices of polyps were negatively correlated with the formation of mucus sheets (correlation = −0.536, p = 0.048). For both sources of sediments, the frequency of mucus sheet formation (MSF) increased with sediment concentration. Increases in terrestrial sediment loads resulted in more striking effects. The probability for MSF under different sediment groups at different concentrations over time was modeled by regressions. Frequency of polyp activity is suggested as a suitable biomarker to monitor the effects of sedimentation stress.     

NOx emission calculations for bulk carriers by using engine power probabilities as weighting factors

An important marine pollution issue identified by the International Maritime Organization (IMO) is NO_x emissions; however, the stipulated method for determining the NO_x certification value does not reflect the actual high emission factors of slow-speed two-stroke diesel engines over long-term slow steaming. In this study, an accurate method is presented for calculating the NO_x emission factors and total amount of NO_x emissions by using the actual power probabilities of the diesel engines in four types of bulk carriers. The proposed method is suitable for all types and purposes of diesel engines, is not restricted to any operating modes, and is highly accurate. Moreover, it is recommended that the IMO-stipulated certification value calculation method be modified accordingly to genuinely reduce the amount of NO_x emissions. The successful achievement of this level of reduction will help improve the air quality, especially in coastal and port areas, and the health of local residents.

Implications: As per the IMO, the NO_x emission certification value of marine diesel engines having a rated power over 130 kW must be obtained using specified weighting factor (WF)-based calculation. However, this calculation fails to represent the current actual situation. Effective emission reductions of 6.91% (at sea) and 31.9% (in ports) were achieved using a mathematical model of power probability functions. Thus, we strongly recommend amending the certification value of NO_x Technical Code 2008 (NTC 2008) by removing the WF constraints, such that the NO_x emissions of diesel engines is lower than the Tier-limits at any load level to obtain genuine NO_x emission reductions.     

An individual-based model to study the reproduction of egg bearing copepods: Application to Eurytemora affinis (Copepoda Calanoida) from the Seine estuary,France

Limited empirical studies have elucidated the daily egg production and associated reproductive processes of egg bearing copepod. Herein, we present an individual-based model which constitutes a realistic representation of the reproduction in egg bearing copepods. The model has been parameterized using an extensive set of experimental data obtained from the literature and from the laboratory and field experiments on the estuarine copepod Eurytemora affinis. The proposed model takes into account the adult female longevity, the clutch size and interclutch duration, which is a function of egg maturation time and latency time required by the female after egg hatching to produce a new clutch. The embryonic development time and hatching success are also taken into account. The effect of temperature on the means and variances of above-mentioned reproductive parameters has been also incorporated. A multi agent system based generic platform “Mobidyc” has been used to generate and calibrate the model. The model demonstrates the reproductive parameters of females of E. affinis which is validated through individual based experiments. Temperature specific simulations provide a dynamical explanation of temperature effect on the cumulative egg production. The daily survival principally affects the number of clutches produced per female during its life span. The results obtained in the present study by combining temperature and survival effects reveal the relatively greater importance of the first factor on the daily egg production of egg-carrying copepods. The present model is generic and hence easily applicable to other animals with comparable reproductive strategy.     

Effects of time-gap settings of adaptive cruise control (ACC) on driving performance and subjective acceptance in a bus driving simulator

A study was conducted to investigate the effects of time-gap settings and contents of secondary tasks on a fix-based bus driving simulator on drivers’ performance while reclaiming control from ACC in a car-following scenario of emergency brake by the lead vehicle. Thirty professional bus drivers drove on the simulator with the scenario of highway traffic flow under 12 random time-gap settings: from 0.64 s to 2.40 s with the interval of 0.16 s. As for the effects of secondary tasks, subjects were evenly divided into three conditions: no secondary task interference, simple secondary task, and complex task. The results demonstrated that different safety demarcations of time-gaps on subjective acceptance and driving performance can be found out. The integrated demarcations separated time-gaps into divisions that represented different levels of danger. It revealed that the safer time-gaps for different situations were: longer than 1.60 s for none-secondary task distraction and longer than 2.08 s for being continuously distracted by secondary tasks. The demand for simple tasks is relatively high, so a larger time-gap is needed for the driver to remain safe. This research has implications for the time-gap selection of ACC and effects of secondary task distraction on buses. A next logical step will focus on determining time-gaps for lead vehicles on curves or slopes, when multiple vehicles are present ahead, and modeling driver behavior and performance with ACC for cars, buses, and other types of vehicles.     

Characterization of the monthly variation in (1 → 3)-β-d-glucan concentrations in university laboratories

We characterize the monthly variation in (1 → 3)-β-d-glucan concentration measured over the course of 1 year, and we evaluate the characteristics of size selection using a two-stage cyclone sampler. The (1 → 3)-β-d-glucan concentrations were measured in four bio-related laboratories. A total of 156 samples were collected using a new two-stage cyclone sampler. Analysis of (1 → 3)-β-d-glucan was performed using the kinetic Limulus amebocyte lysate assay. The study showed that airborne (1 → 3)-β-d-glucan concentrations were significantly higher in laboratory D (mean ± SD 1,105?±?1,893 pg/m³) and in the spring (5,458 pg/m³). The highest concentration of (1 → 3)-β-d-glucan occurred in the spring, particularly in May.     

Characteristics of fungal flora in onion farmlands with potential link to human mycotic keratitis

Acquisition of mycotic keratitis has been linked to agricultural activities. Although fungi were identified in injured eyes, data derived directly from farmlands are limited. Following five cases of fungal corneal ulcers in onion harvesters in the monsoon area of Taiwan, the present study further determined fungi genera and their concentrations in onion crops and surface soils of onion farmlands. In total, 52, 100 and 100 samples of soils, onion leaves and bulb scales, respectively, were collected from three monsoon and one non-monsoon farmlands. Fungal colonies were counted and microscopically examined after incubation at 25°C for 4–7 days on malt extract agar with 40?g?mL^?1 chloramphenicol. Results showed the peak fungi levels were mostly observed at harvest time. Among keratitis-related fungi, Aspergillus predominated in soils as well as in onion bulb scales, while Alternaria in onion leaves. Cladosporium was also prevalent in soils, onion leaves and scales. Other keratitis-related fungi included Acremonium, Curvalaria, Fusarium, Mycelia, Penicillium, Rhizoctonia and Rhizopus. The present study provides an exposure link between onion harvesters and presence of keratitis-related fungi from onion crops and soils, which may account for mycotic ocular infection via hand-to-eye contact and airborne transmission during the monsoon season.     

Arsenic concentration in porewater of an alkaline coal ash disposal site: Roles of siderite precipitation/dissolution and soil cover

The geochemical behavior of As in porewaters of an alkaline coal ash disposal site was investigated using multilevel samplers. The disposal site was in operation from 1983 until 1994 and was covered with 0.3–0.5 m thick soils in 2001 when this study was initiated. Sequential extraction analyses and batch leaching experiments were also performed using the coal ash samples collected from the disposal site. The results suggest the important roles of siderite (FeCO₃) precipitation/dissolution and soil cover, which have been ignored previously. Arsenic levels in the porewater were very low (average of 10 μg L⁻¹) when the site was covered with soil due to coprecipitation with siderite. The soil cover enabled the creation of anoxic conditions, which raised the Fe concentration by the reductive dissolution of Fe-(hydr)oxides. Because of the high alkalinity generated from the alkaline coal ash, even a small increase in the Fe concentration (0.66 mg L⁻¹ on average) could cause siderite precipitation. When the soil cover was removed, however, an oxidizing condition was created and triggered the precipitation of dissolved Fe as (hydr)oxides. As a result, the dissolution of previously precipitated As-rich siderite caused higher As concentration in the porewater (average of 345 μg L⁻¹).