Development and application of a video-mosaic survey technology to document the status of coral reef communities

The recent decline in the condition of coral reef communities worldwide has fueled the need to develop innovative assessment tools to document coral abundance and distribution rapidly and effectively. While most monitoring programs rely primarily on data collected in situ by trained divers, digital photographs and video are used increasingly to extract ecological indicators, provide a permanent visual record of reef condition, and reduce the time that divers spend underwater. In this study, we describe the development and application of a video-based reef survey methodology based on an algorithm for image registration and the estimation of image motion and camera trajectory. This technology was used to construct two-dimensional, spatially accurate, high-resolution mosaics of the reef benthos at a scale of up to 400 m². The mosaics were analyzed to estimate the size and percent cover of reef organisms and these ecological indicators of reef condition were compared to similar measurements collected by divers to evaluate the potential of the mosaics as monitoring tools. The ecological indicators collected by trained divers compared favorably with those measured directly from the video mosaics. Five out of the eight categories chosen (hard corals, octocorals, Palythoa, algal turf, and sand) showed no significant differences in percent cover based on survey method. Moreover, no significant differences based on survey method were found in the size of coral colonies. Lastly, the capability to extract the same reef location from mosaics collected at different times proved to be an important tool for documenting change in coral abundance as the removal of even small colonies (<10 cm in diameter) was easily documented. The two-dimensional video mosaics constructed in this study can provide repeatable, accurate measurements on the reef-plot scale that can complement measurements on the colony-scale made by divers and surveys conducted at regional scales using remote sensing tools.     

Water toxicity monitoring using Vibrio fischeri: a method free of interferences from colour and turbidity

In this paper the kinetic method for the determination of toxicity using Vibrio fischeri is described and suggested as a potential method for the continuous screening of wastewater toxicity. The kinetic method was demonstrated to be free from interferences due to colour and turbidity normally observed when testing wastewater samples with this organism. This is of great importance for the application of the method to remote toxicity screening of wastewaters. The effect of colour, investigated using 50 ppm Zn(2+) solutions containing the food-dye tropaeolin O, and the effect of turbidity, investigated using 50 ppm Zn(2+) solutions containing white optically reflective and coloured optically absorbing polystyrene beads, is reported. It was also found that the design of the light detection system of the instrument ensures efficient collection of the light scattered by particles in the sample, which enables a greater range of turbid samples to be tested. In addition the natural light decay was found to be negligible during the duration of a 10 min test and thus one channel would be enough to carry out the tests. This would mean halving the quantity of bacterial reagent used and reducing the cost of the tests.     

An ecosystem report on the Panama Canal: monitoring the status of the forest communities and the watershed

In 1996, the Smithsonian Tropical Research Institute and the Republic of Panama's Environmental Authority, with support fromthe United States Agency for International Development, undertook a comprehensive program to monitor the ecosystem of the Panama Canal watershed. The goals were to establish baselineindicators for the integrity of forest communities and rivers. Based on satellite image classification and ground surveys, the2790 km² watershed had 1570 km² of forest in 1997, 1080 km² of which was in national parks and nature monuments. Most of the 490 km² of forest not currently in protected areas lies along the west bank of the Canal, and its managementstatus after the year 2000 turnover of the Canal from the U.S. to Panama remains uncertain. In forest plots designed to monitorforest diversity and change, a total of 963 woody plant specieswere identified and mapped. We estimate there are a total of 850–1000 woody species in forests of the Canal corridor. Forestsof the wetter upper reaches of the watershed are distinct in species composition from the Canal corridor, and have considerably higher diversity and many unknown species. Theseremote areas are extensively forested, poorly explored, and harbor an estimated 1400–2200 woody species. Vertebrate monitoring programs were also initiated, focusing on species threatened by hunting and forest fragmentation. Large mammals are heavily hunted in most forests of Canal corridor, and therewas clear evidence that mammal density is greatly reduced in hunted areas and that this affects seed predation and dispersal. The human population of the watershed was 113 000 in 1990, and grew by nearly 4% per year from 1980 to 1990. Much of this growth was in a small region of the watershed on the outskirts of Panama City, but even rural areas, including villages near and within national parks, grew by 2% per year. There is no sewage treatment in the watershed, and many towns have no trashcollection, thus streams near large towns are heavily polluted. Analyses of sediment loads in rivers throughout the watershed did not indicate that erosion has been increasing as a result ofdeforestation, rather, erosion seems to be driven largely by total rainfall and heavy rainfall events that cause landslides.Still, models suggest that large-scale deforestation would increase landslide frequency, and failure to detect increases inerosion could be due to the gradual deforestation rate and the short time period over which data are available. A study of runoff showed deforestation increased the amount of water fromrainfall that passed directly into streams. As a result, dry season flow was reduced in a deforested catchment relative to aforested one. Currently, the Panama Canal watershed has extensive forest areasand streams relatively unaffected by humans. But impacts of hunting and pollution near towns are clear, and the burgeoningpopulation will exacerbate these impacts in the next few decades.Changes in policies regarding forest protection and pollution control are necessary.     

Foraminifera as bioindicators in coral reef assessment and monitoring: the FORAM Index. Foraminifera in Reef Assessment and Monitoring

Coral reef communities are threatened worldwide. Resource managers urgently need indicators of the biological condition of reef environments that can relate data acquired through remote-sensing, water-quality and benthic-community monitoring to stress responses in reef organisms. The FORAM (Foraminifera in Reef Assessment and Monitoring) Index (FI) is based on 30 years of research on reef sediments and reef-dwelling larger foraminifers. These shelled protists are ideal indicator organisms because: Foraminifers are widely used as environmental and paleoenvironmental indicators in many contexts; Reef-building, zooxanthellate corals and foraminifers with algal symbionts have similar water-quality requirements; The relatively short life spans of foraminifers as compared with long-lived colonial corals facilitate differentiation between long-term water-quality decline and episodic stress events; Foraminifers are relatively small and abundant, permitting statistically significant sample sizes to be collected quickly and relatively inexpensively, ideally as a component of comprehensive monitoring programs; and Collection of foraminifers has minimal impact on reef resources.USEPA guidelines for ecological indicators are used to evaluate the FI. Data required are foraminiferal assemblages from surface sediments of reef-associated environments. The FI provides resource managers with a simple procedure for determining the suitability of benthic environments for communities dominated by algal symbiotic organisms. The FI can be applied independently, or incorporated into existing or planned monitoring efforts. The simple calculations require limited computer capabilities and therefore can be applied readily to reef-associated environments worldwide. In addition, the foraminiferal shells collected can be subjected to morphometric and geochemical analyses in areas of suspected heavy-metal pollution, and the data sets for the index can be used with other monitoring data in detailed multidimensional assessments.     

The importance of site selection in monitoring the macroinvertebrate communities of the Yarra River,Victoria

The condition of the macroinvertebrate fauna of the Yarra River deteriorates progressively downstream from the virtually pristine headwater areas, through cleared rural areas in the mid-Yarra, to urban areas in the lower sections of the Yarra. It was found during a four year study, that the physico-chemical parameters affecting the fauna varied substantially in relation to the different physical characteristics of each site. In general, it is suggested that nutrients and the riparian vegetation had greatest impact on the riffle communities, and turbidities had greatest impact on the pool communities. The physical characteristics of each site also influenced the type and degree of response in the fauna to fluctuations in flow. Full consideration should therefore be given to the type of stream habitat sampled when attempting to determine which water quality parameters have significant long-term effects on the condition of the fauna.     

烟气林格曼数监测新探

讨论了烟气格曼数与监测时间选择和计算取值方面存在的问题。认为在一个加煤燃烧周期内按一定间隔时间取值，然后取量大值与平均值之和和１／２作为监测结果有一定意义。并提出了一个表达方式，时时－林格曼数Ｂ＝１／ＴΣ（ｎ，ｉ＝１）。     

Real time remote monitoring of air pollutants and their online transmission to the web using internet protocol

Recent advances in both information and sensor technologies have enabled the development of Real Time Remote Monitoring (RTRM) capabilities for environmental management. An online and real time remote monitoring system for air pollution has been designed and installed at a traffic police station at Punjagutta in Hyderabad, India. The system is optimized using electrochemical sensors and a real time particulate matter analyzer. The system also monitors meteorological parameters such as temperature, humidity, rainfall, barometric pressure, wind speed and wind direction. The system periodically monitors both pollution and meteorological parameters at pre- programmed intervals of hr during peak periods and 1 hr during non peak periods of the day and continuously uploads to a predestinated web site (www.appcb.org/home.htm) using File Transfer Protocol. The web site renders a quick, simple and graphical display of air pollution levels and meteorological parameters and their significance to humans. The present paper highlights design considerations of a pollution monitoring system, system hardware and software requirements and practical limitations and future directions for real time remote monitoring of air pollution.     

Quantification of pendimethalin in soil and garlic samples by microwave-assisted solvent extraction and HPLC method

A method for the residual pendimethalin in soil and vegetable samples was developed. The method is based on extraction of pendimethalin from samples using microwave-assisted solvent extraction (MASE) with acetone, ethanol, and water as extraction solvent. Extracted pendimethalin samples were analyzed by high-performance liquid chromatography with ultraviolet detector at 240 nm. The MASE parameters, temperature, heating time, and solvent types were optimized with the feasibility of MASE application in the determination of pendimethalin extraction efficiency of pendimethalin from soil and vegetable samples. The maximum temperature that can be used during the heating for MASE is 60°C, where the recovery percentages reached 97%. Linearity for pendimethalin was found in the range of 2?C20 ??g mL^???1 with limits of detection and limits of quantification of 0.059 and 0.17 ??g mL^???1, respectively.     

Ecological monitoring of intertidal phytobenthic communities of the Basque Coast (N. Spain) following the Prestige oil spill

Following the Prestige oil spill, six-monthly samplings (spring and autumn) of intertidal macroalgal assemblages were carried out from 2004 to 2006 in twelve locations along the Basque coast. Macroalgal species appeared to be little modified, but species richness, diversity, and algal cover were significantly lower in the first year of the study, so it cannot be ruled out that the arrival of oil on the Basque coast might have had a damaging effect on intertidal communities. On the other hand, no significant differences were detected between locations slightly and moderately affected by oil in any of the structural parameters considered. By contrast, significant differences were detected between locations within each oiling level that indicate that other natural environmental factors play a greater role in the differences between locations than the oiling level. Likewise, significant differences were detected between areas within each location which were not consistent with time, indicating that communities are highly heterogeneous in species richness, diversity and algal cover at the scale of tens of meters. The dominant Corallina elongata and most of the accompanying species did not show significant year-on-year differences in terms of cover. Also, there were no differences between the two oiling levels. Analyses revealed a high spatial variability at the scale of kilometers (locations) and tens of meters (areas) for most of the taxa. The results obtained provide detailed quantitative data on intertidal phytobenthic assemblages of the Basque coast at different spatial and temporal scales that were hitherto unavailable for the region.     

High frequency monitoring of the coastal marine environment using the MAREL buoy

The MAREL Iroise data buoy provides physico-chemical measurements acquired in surface marine water in continuous and autonomous mode. The water is pumped 1.5 m from below the surface through a sampling pipe and flows through the measuring cell located in the floating structure. Technological innovations implemented inside the measuring cell atop the buoy allow a continuous cleaning of the sensor, while injection of chloride ions into the circuit prevents biological fouling. Specific sensors for temperature, salinity, oxygen and fluorescence investigated in this paper have been evaluated to guarantee measurement precision over a 3 month period. A bi-directional link under Internet TCP-IP protocols is used for data, alarms and remote-control transmissions with the land-based data centre. Herein, we present a 29 month record for 4 parameters measured using a MAREL buoy moored in a coastal environment (Iroise Sea, Brest, France). The accuracy of the data provided by the buoy is assessed by comparison with measurements of sea water weekly sampled at the same site as part of SOMLIT (Service d'Observation du Milieu LIToral), the French network for monitoring of the coastal environment. Some particular events (impact of intensive fresh water discharges, dynamics of a fast phytoplankton bloom) are also presented, demonstrating the worth of monitoring a highly variable environment with a high frequency continuous reliable system.     

Retrospective monitoring and inventory of soil contamination in relation to systematic monitoring

Retrospective monitoring of soil contamination has been performed in the Czech Republic. This kind of monitoring is based on the comparison of the heavy metals content in soil samples taken during a systematic soil survey (1960–1970) and in samples taken at the present time. The anticipated high degree of soil pollution in the Czech Republic has not been proved. Most of the contaminated soils were found to be loaded just 20–35 years ago. Retrospective monitoring is considered to be an accelerating tool for determining the strategy of the systematic monitoring of soil contamination. This procedure stimulated the development of the multi-step system of soil loading limits.     

New kinetic-spectrophotometric method for monitoring the concentration of iodine in river and city water samples

A new kinetic method has been developed for the determination of iodine in water samples. The method is based on the catalytic effect of I^? with the oxidation of Indigo Carmine (IC) by KBrO₃ in the sulfuric acid medium. The optimum conditions obtained are 0.16 M sulfuric acid, 1?×?10^?3 M of IC, 1?×?10^?2 M KBrO₃, reaction temperature of 35°C, and reaction time of 80 s at 612 nm. Under the optimized conditions, the method allowed the quantification of I^? in a range of 12–375 ng/mL with a detection limit of 0.46 ng/mL. The method was applied to the determination of iodine in river and city water samples with the satisfactorily results.     

An automated monitoring of atmospheric mixing height from routine radiosonde profiles over South Korea using a web-based data transfer method

This study describes an effort to estimate atmospheric mixing height using vertical profiles of thermodynamic variables measured operationally at radiosonde sites in South Korea. We focus on mixing height at 06UTC (15LST) when vigorous daytime convection is expected with clear skies. For this purpose, we developed a simple numerical algorithm using a new data transfer tool, known as cURL, to determine mixing height and applied it to radiosonde data at Osan and Gwangju for 2010. Emphasis was placed on automating as much as possible the process of determining mixing height. According to the preliminary results, the estimation algorithm performed successfully for most cases with clear sky conditions and was useful in diagnosing and monitoring daytime mixing heights more effectively on a near-real-time basis. With the developed algorithm, it is possible to estimate mixing heights from radiosonde data within a few hours of the development of the convective boundary layer. Application to radiosonde sites in other countries is straightforward and continued modifications of the algorithm are anticipated in the near future.     

Chemical and bioassay monitoring of PCB-contaminated soil remediation using solvent extraction technology

Illegal dumping of polychlorinated biphenyl (PCB) capacitors was discovered in Kobe, Japan, in 2001, leaving about 68 m(3) (92 tons) of soil contaminated with approximately 6.6 kg of PCBs. Solvent extraction technology carried out in 2002-2003 using isopropyl alcohol remedied the affected soil at the site. Forty-seven batch treatments were conducted during full-scale treatment. On average, 8.4 extraction cycles per batch were needed to achieve the clean-up goal for PCBs (i.e., the Japanese environmental quality standard for soil). Analytical results showed that the average PCB concentration (88 microg g(-1)-dry soil) in untreated soil samples of all the batches was decreased to 1.2 microg g(-1)-dry soil in treated soil samples, yielding a removal efficiency of 98.6%. Dioxin responsive-chemical activated luciferase gene expression assay (DR-CALUX) and enzyme-linked immunosorbent assay (ELISA) adopting a monoclonal antibody against 2,3',4,4',5-pentachlorobiphenyl (PCB #118) were used to rapidly screen soil samples before and after solvent extraction. The DR-CALUX and ELISA results were in good agreement with World Health Organization toxicity equivalent values and analytically determined PCB concentrations, respectively. Regular monitoring during the treatment period confirmed that the applied technology met Japanese environmental and control regulations concerning treatment and disposal of contaminated soils and treatment residues. After full-scale treatment, the amount of PCBs recovered from the solvent purification system approximated the estimated amount of PCBs spilled.     

Temporal and spatial variability of phytoplankton monitored by a combination of monitoring buoys,pigment analysis and fast screening microscopy in the Fehmarn Belt Estuary

For 2 years, a baseline investigation was carried out to collect reference information of the present environmental status in the Fehmarn Belt and adjacent area. The temporal and spatial variability of phytoplankton was monitored by a combination of monitoring buoys, pigment analysis and fast screening microscopy. The overall phytoplankton succession in the Fehmarn Belt area was found to be influenced primarily by the seasonal changes, where various diatoms dominated the spring and autumn blooms and flagellates like Chrysochromulina sp., Dictyocha speculum and various dinoflagellates were occasionally abundant in late spring and summer. The phytoplankton groups were remarkably uniform horizontally in the investigation area while large differences in both biomasses and composition of individual phytoplankton groups were seen vertically in the water column, especially in the summer periods, in which the two-layer exchange flow between the North Sea and the Baltic Sea is showing a particularly strong stratification in the Fehmarn Belt. The chlorophyll a concentrations ranged continuously from 1 to 3 μg/L at the three permanent buoy stations during the 2 years of monitoring, except for the spring and autumn blooms where chlorophyll a increased up to 18 μg/L in the spring of 2010 and up to 8 μg/L in the autumn of 2009. Recurrent blooms of filamentous cyanobacteria are common during the summer period in the Baltic Sea and adjacent areas, but excessive blooms of cyanobacteria did not occur in 2009 and 2010 in the Fehmarn Belt area. The combination of the HPLC pigment analysis method and monitoring buoys continuously measuring fluorescence at selected stations with fast screening of samples in the microscope proved advantageous for obtaining information on both the phytoplankton succession and dynamic and, at the same time, getting information on duration and intensity of the blooms as well as specific information on the dominant species present both temporally and spatially in the large Fehmarn Belt area.     

Zoobenthic variability associated with a flood and drought in the Hawkesbury estuary,New South Wales: Some consequences for environmental monitoring

Changes in the Hawkesbury zoobenthos associated with a major flood and drought are described and comparisons made in the patterns of change among estuarine reaches and among sites within reaches. The consequences for environmental monitoring and management are discussed. Replicate grab samples were taken from four sites in each of the lower, middle and upper reaches. Reductions in the mean number of species per grab (S) following the flood were significant only in the lower reaches and at one site in the middle reaches. Increases in S accompanied the drought in all reaches but intra-reach variation in temporal patterns occurred in both S and in the most abundant species found. Thus, major weather events are associated with temporal changes whose patterns differ on both small and large spatial scales. Consequently, the results from fixed-factor sampling designs, which are widely used, may be unrepresentative of other areas. Unfortunately, the alternative approach of stratified random sampling will probably be both prohibitively expensive and difficult to implement in the complex estuarine benthic habitat. Further, short-term studies will probably be grossly unrepresentative of natural temporal variation. Attempts to reduce expenses by using only one or two abundant species as characterising communities or as indicators of physicochemical conditions may be unreliable because of variation in both time and space in dominant species and the lack of pollution-response knowledge for local species.     

Water quality monitoring of Al-Habbaniyah Lake using remote sensing and in situ measurements

Environmental Monitoring and Assessment - A good quality drinking water is essential for human survival. However, a large percentage of the populations in most developing countries (Nigeria...     

Rapid survey protocol that provides dynamic information on reef condition to managers of the Great Barrier Reef

Managing to support coral reef resilience as the climate changes requires strategic and responsive actions that reduce anthropogenic stress. Managers can only target and tailor these actions if they regularly receive information on system condition and impact severity. In large coral reef areas like the Great Barrier Reef Marine Park (GBRMP), acquiring condition and impact data with good spatial and temporal coverage requires using a large network of observers. Here, we describe the result of ~10 years of evolving and refining participatory monitoring programs used in the GBR that have rangers, tourism operators and members of the public as observers. Participants complete Reef Health and Impact Surveys (RHIS) using a protocol that meets coral reef managers’ needs for up-to-date information on the following: benthic community composition, reef condition and impacts including coral diseases, damage, predation and the presence of rubbish. Training programs ensure that the information gathered is sufficiently precise to inform management decisions. Participants regularly report because the demands of the survey methodology have been matched to their time availability. Undertaking the RHIS protocol we describe involves three ~20 min surveys at each site. Participants enter data into an online data management system that can create reports for managers and participants within minutes of data being submitted. Since 2009, 211 participants have completed a total of more than 10,415 surveys at more than 625 different reefs. The two-way exchange of information between managers and participants increases the capacity to manage reefs adaptively, meets education and outreach objectives and can increase stewardship. The general approach used and the survey methodology are both sufficiently adaptable to be used in all reef regions.