Flocculation model of cohesive sediment using variable fractal dimension

A new flocculation model using variable fractal dimension is proposed and validated with several experimental data and an existing model. The proposed model consists of two processes: aggregation and breakup due to flow turbulence. For aggregation process, the aggregate structure is considered to have the characteristic of self-similarity, the main concept of fractal theory. Under this assumption, a variable fractal dimension instead of a fixed one adopted by previous studies is utilized here for general cohesive sediment transport. For breakup, similar concept is adopted in a more empirical manner because breakup is too abrupt to entirely apply the concept of variable fractal dimension. By a linear combination of the formulations for aggregation and breakup processes, a flocculation model which can describe the temporal evolution of floc size is obtained. Flocculation model using variable fractal dimension is capable of predicting equilibrium floc size when compared with several experimental data sets using different types of mud provided that empirical coefficients are calibrated. Through model-data comparison with Manning and Dyer (Marine Geology 160:147–170, 1999), it is also clear that some of the empirical coefficients may depend on sediment concentration. Model results for the temporal evolution of floc size are less satisfactory, despite model results shows a more smooth “S-curve” for the temporal evolution of floc size as compared with the previous model using fixed fractal dimension. The proposed model is limited to mono-size of primary particle and dilute flow condition. These other features shall be investigated as future work.     

Idealized study on cohesive sediment flux by tidal asymmetry

The flux of cohesive sediment in an estuary is determined by many factors, including tidal asymmetry, wave effect, fluvial influence, phase difference between tidal velocity and tidal level fluctuations, sediment properties, flocculation, bed erodibility, bathymetry effect and other nonlocal effects. Our capability in predicting sediment fluxes in tide-dominant environments is critical to the morphodynamics and water quality of estuaries. Due to the difficulties in carrying out detailed measurement of sediment flux with high spatial and temporal resolutions, an one-dimensional-vertical (1DV) numerical model for cohesive sediment transport, previously verified and calibrated with field measured cohesive sediment concentration data, is utilized here to study some of the aforementioned factors in affecting tidal-driven sediment fluxes in idealized condition. Tidal-averaged sediment flux is shown to be correlated with tidal velocity skewness with a linear relationship. This linear relationship is different from that of non-cohesive sediment and it is demonstrated here to be mainly due to variable critical shear stress implemented for the mud bed in order to parameterize consolidation. The reason that tidal velocity skewness causes tidal-averaged residual sediment transport is shown to be due to nonlinear intra-tidal interactions between flow velocity and sediment concentration. Moreover, the effects of nonlinear intra-tidal interaction between tidal velocity and tidal level fluctuations is shown to mainly cause seaward transport, which is the most significant under progressive wave system (phase difference 90°) and almost negligible for standing wave system (phase difference 0°).     

Efficient numerical computation and experimental study of temporally long equilibrium scour development around abutment

For the abutment bed scour to reach its equilibrium state, a long flow time is needed. Hence, the employment of usual strategy of simulating such scouring event using the 3D numerical model is very time consuming and less practical. In order to develop an applicable model to consider temporally long abutment scouring process, this study modifies the common approach of 2D shallow water equations (SWEs) model to account for the sediment transport and turbulence, and provides a realistic approach to simulate the long scouring process to reach the full scour equilibrium. Due to the high demand of the 2D SWEs numerical scheme performance to simulate the abutment bed scouring, a recently proposed surface gradient upwind method (SGUM) was also used to improve the simulation of the numerical source terms. The abutment scour experiments of this study were conducted using the facility of Hydraulics Laboratory at Nanyang Technological University, Singapore to compare with the presented 2D SGUM–SWEs model. Fifteen experiments were conducted with their scouring flow durations vary from 46 to 546 h. The comparison shows that the 2D SGUM–SWEs model gives good representation to the experimental results with the practical advantage.     

Turbulence suppression by suspended sediment within a geophysical flow

Experiments are performed in a mixing box to evaluate the effect of suspended sediment on turbulence generated by an oscillating grid. Quartz-density sand of varying sizes and concentrations is used, and particle image velocimetry is employed to quantify only the fluid phase. Results show that (1) while a relatively large secondary flow field is present in the box, turbulence is a maximum near the grid and it decreases systematically toward the water surface; (2) relatively high concentrations of fine sediment can markedly alter this secondary flow field and significantly decrease both the time-mean and turbulent kinetic energy within the flow, yet these same sediment concentrations have little effect on the integral time and length scales derived for each velocity component; and (3) the overall turbulence suppression observed can be related to the transfer of energy from the fluid to the sediment and the maintenance of a suspended sediment load rather than commonly employed turbulence modulation criteria. These experimental data demonstrate unequivocally that the presence of a suspended sediment load can significantly reduce overall turbulent kinetic energy, and these results should be applicable to a range of sediment-laden geophysical flows.     

Secondary flow within a river bed and contaminant transport

We have developed a numerical method to simulate the transport of non-sorbing contaminants within the sediment layer of a stream and the leaching of these contaminants in the steam. Typical stream bottom surfaces are uneven with triangularly shaped undulation forms. The flow of the water above such triangular surfaces causes external pressure changes that result in a “pumping effect” and a secondary flow within the sediment. The latter causes a significant contaminant advection within the sediment layer. The flow field in the porous sediment layer is obtained by solving numerically Darcy’s equations. The unsteady mass transfer equation is solved by using a finite-difference method with an up-wind scheme. The effects of parameters, such as channel slope, hydraulic head and dispersion, are studied by quantitatively comparing the numerical results of the total mass flow rate from the contaminant source, the concentration front propagation, and the contaminant mass flow rate into the water column. The “pumping effect,” increases the flow in the vertical direction and, thus, enhances the vertical advective mass transport of the contaminant. This bedform-shape induced flow is largely responsible for the mass transfer of contaminants into the water column. The numerical results also show that the mechanical dispersion inside the sediment bed will significantly increase the contaminant mass flow rate from the source.     

A review of source tracking techniques for fine sediment within a catchment

Excessive transport of fine sediment, and its associated pollutants, can cause detrimental impacts in aquatic environments. It is therefore important to perform accurate sediment source apportionment to identify hot spots of soil erosion. Various tracers have been adopted, often in combination, to identify sediment source type and its spatial origin; these include fallout radionuclides, geochemical tracers, mineral magnetic properties and bulk and compound-specific stable isotopes. In this review, the applicability of these techniques to particular settings and their advantages and limitations are reviewed. By synthesizing existing approaches, that make use of multiple tracers in combination with measured changes of channel geomorphological attributes, an integrated analysis of tracer profiles in deposited sediments in lakes and reservoirs can be made. Through a multi-scale approach for fine sediment tracking, temporal changes in soil erosion and sediment load can be reconstructed and the consequences of changing catchment practices evaluated. We recommend that long-term, as well as short-term, monitoring of riverine fine sediment and corresponding surface and subsurface sources at nested sites within a catchment are essential. Such monitoring will inform the development and validation of models for predicting dynamics of fine sediment transport as a function of hydro-climatic and geomorphological controls. We highlight that the need for monitoring is particularly important for hilly catchments with complex and changing land use. We recommend that research should be prioritized for sloping farmland-dominated catchments.     

Feedbacks of flow and bed morphology from a submerged dense vegetation patch without upstream sediment supply

Environmental Fluid Mechanics - Laboratory experiments were performed to investigate how flow patterns and bed morphology are affected around a submerged vegetation patch in the condition without...     

Food sources used by sediment meiofauna in an intertidal Zostera noltii seagrass bed: a seasonal stable isotope study

In an intertidal Zostera noltii Hornem seagrass bed, food sources used by sediment meiofauna were determined seasonally by comparing stable isotope signatures (δ¹³C, δ¹⁵N) of sources with those of nematodes and copepods. Proportions of different carbon sources used by consumers were estimated using the SIAR mixing model on δ¹³C values. Contrary to δ¹⁵N values, food source mean δ¹³C values encompassed a large range, from −22.1 ‰ (suspended particulate organic matter) to −10.0 ‰ (Z. noltii roots). δ¹³C values of copepods (from −22.3 to −12.3 ‰) showed that they use many food sources (benthic and phytoplanktonic microalgae, Z. noltii matter). Nematode δ¹³C values ranged from −14.6 to −11.4 ‰, indicating a strong role of microphytobenthos and/or Z. noltii matter as carbon sources. The difference of food source uses between copepods and nematodes is discussed in light of source accessibility and availability.     

Quantifying a significance of sediment particle size to hyporheic sedimentary oxygen demand with a permeable stream bed

A mechanistic model of sedimentary oxygen demand (SOD) for hyporheic flow is presented. The permeable sediment bed, e.g. sand or fine gravel, is considered with hydraulic conductivity in the range $0.1 < K < 20$  cm/s. Hyporheic pore water flow is induced by pressure fluctuations at the sediment/water interface due to near-bed turbulent coherent motions. A 2-D advection–diffusion equation is linked to the pore water flow model to simulate the effect of advection–dispersion driven by interstitial flow on oxygen transfer through the permeable sediment. Microbial oxygen uptake in the sediment is expressed as a function of the microbial growth rate, and is related to the sediment properties, i.e. the grain diameter $(d_{s})$ and porosity $(\phi )$ . The model describes the significance of sediment particle size to oxygen transfer through the sediment and microbial oxygen uptake: With increasing grain diameter $(d_{s})$ , the hydraulic conductivity $(K)$ increases so does the oxygen transfer rate, while particle surface area per volume (the available surface area for colonization by biofilms) decreases reducing the microbial oxygen uptake rate. Simulation results show that SOD increases as the hydraulic conductivity $(K)$ increases before a threshold has been reached. After that, SOD diminishes with the increment of the hydraulic conductivity $(K)$ .     

Model of turbulence penetration into a suspension layer on a sediment bed and effect on vertical solute transfer

The vertical diffusional mass (solute) transfer through a suspended sediment layer, e.g. at the bottom of a lake, reservoir or estuary, by the propagation of velocity fluctuations from above was investigated. The attenuation of the velocity fluctuations in the suspension layer and the associated effect on solute transfer through the suspension layer was simulated. To represent large eddies traveling downstream in water over a high-concentration suspended sediment layer, a streamwise velocity fluctuation moving in downstream direction was imposed along the upper boundary of the suspension layer. Velocity fluctuations and downstream velocity were normalized by the shearvelocity (U_*) at the top of the suspension layer. Streamwise and vertical velocity components inside the suspension layer, were obtained from the 2-D continuity and the Navier–Stokes equations. The persistence of turbulence with depth—as it penetrates from the overlying water into the suspension layer—was found to depend on its amplitude, its period, and on the apparent viscosity of the suspension. The turbulence was found to propagate efficiently into the suspension layer when its frequency is low, and the apparent viscosity of the suspension is high. Effects on vertical mass transfer were parameterized by penetration depth and effective diffusion coefficient, and related to apparent viscosity of the suspension, Schmidt number and shear velocity on top of the suspension layer. The enhancement of turbulence penetration by viscosity is similar to the flow near an oscillating flat plate (Stokes’ second problem), but is opposite to turbulence penetration into a stationary porous and permeable sediment bed. The information is applicable to water quality modeling mear the sediment/water interface of lakes, river impoundments and estuaries.     

Deoxyribonuclease activity in seawater and sediment

This paper describes a fluorometric method for assaying deoxyribonuclease (DNase) activity in natural seawater and sediment. DNase activity was detected in a sea-water sample taken from Tokyo Bay (Japan), and in various sediment samples taken from Suruga, Sagami and Tokyo Bays, and from Aburatsubo Inlet. Much more DNase occurred in seawater in a state bound to suspended particles or microbial cells than dissolved free in seawater. Although viable DNA-hydrolyzing bacteria were found to be widely distributed in seawater and sediment, poor correlation existed between the bacterial population and the intensity of DNase activity in the sediments examined. In addition, intensities of DNase activity in various surface sediments had no apparent correlation with the DNA contents and the sediment types. However, a close correspondence was found between the vertical variation of DNase activities and the gradient of DNA contents and of Eh in the core sediment at Aburatsubo Inlet.     

Prediction of scour depth and dune morphology around circular bridge piers in seepage affected alluvial channels

Prediction of scour depth is one of the most significant problems in designing of bridges. Due to complexity of scour phenomenon, available empirical equations do not always offer accurate scour depth prediction. In this work, experiments were conducted on non-uniform sands using two piers of different diameter with and without seepage conditions. It has been found that, the scour depth at upstream of piers is decreased with application of downward seepage. The observed scour depths are compared with scour depth predicted by various prediction methods and it has been observed that the available equations are not suitable for seepage conditions. The present work thus introduces a new empirical equation for prediction of scour depth at piers with inclusion of seepage. The features of migrating dune like bedforms at downstream of piers due to deposition of scoured bed material are also explored. Height of deposition is found to be increased with downward seepage. The empirical equation describing morphology of dunes behind piers is also developed by incorporating downward seepage parameter.     

Phylogenetic diversity of Archaea in prawn farm sediment

The structure and diversity of the Archaea collected from prawn farm sediment were investigated for the first time. A partial 16S ribosomal DNA library was constructed with Archaea-specific primers. Subsequently, 80 randomly selected archaeal clones from the library were analyzed by restriction fragment length polymorphism (RFLP), and resulted in 50 different RFLP patterns. Sequence analysis of representatives from each unique RFLP type revealed high diversity in the archaeal populations, and the majority of archaeal clones were either members of novel lineages or most closely related to uncultured clones. In the phylogenetic analysis, the archaeal clones could be grouped into discrete phylogenetic lineages within the two kingdoms Crenarchaeota and Euryarchaeota. Euryarchaeota dominated in our archaeal library, with up to 72.2% of the total clones, and Crenarchaeota represented 27.8%. Of all the Euryarchaeota clones, three clones (5.6%) were affiliated with Methanosarcinales, four clones (7.4%) were related to Methanomicrobiales, three clones (5.6%) were related to Halobacterium (with 93% similarity), and the remaining clones (81.5%) were related to those uncultured Euryarchaeota in the aquatic sediment ecosystem. None of the crenarchaeal clones were associated with any known cultured lineages. The selective dispersal of the archaeal population indicates that their ecological niches are associated with environmental characteristics. Novel phylotypes of Archaea would expand our understanding of the genetic diversity of Archaea in aquatic sediment systems and would be significant in the phylogenetic study of Archaea.Communicated by O. Kinne, Oldendorf/Luhe     

Uptake of glucose by bacteria in the sediment

A method is described for the incubation of undisturbed sediment cores under in situ conditions with the addition of low concentrations of ¹⁴C-glucose. Data are presented for respiration, gross uptake and actual uptake rate of glucose by bacteria in sandy, wave-washed beaches of the Baltic Sea. On the average, the bacteria respired 8% of the total glucose taken up. The gross uptake measured was between 2.3×10^-3 and 6.8×10^-3 g ¹⁴C-glucose g sediment^-1 (dry weight) h^-1 (average 4.7×10^-3 g g^-1 h^-1). Minima in the gross uptake rate corresponded with maxima in the concentration of natural free dissolved glucose. For the actual uptake rate, however, very similar uptake rates were calculated for the sediments examined (between 1.4×10^-1 and 1.9×10^-1 g glucose g^-1 h^-1, average 1.7×10^-1 g g^-1 h^-1).Publication No. 183 of the Joint Research Program at Kiel University (Sonderforschungsbereich 95 der Deutschen Forschungsgemeinschaft).     

黄浦江沉积物污染及潜在生态风险评价初步研究

采用Hakanson生态风险指数法对黄浦江沉积物样品中PCB、Hg、Cd、As、Cu、Pb、Cr和Zn等8个污染要素进行了分析,对其污染程度和潜在的生态风险进行了评价。结果表明,黄浦江污染程度和潜在生态风险为中等。从总的污染程度来看,黄浦江各污染物对生态风险影响程度由大到小的顺序为:Hg,Cd,PCB,As,Cu,Pb,Zn,Cr。     

白洋淀底泥在芦苇生境下的变化规律初探

底泥是湖泊水库的重要组成部分,能够反映湖泊水库演化的历史过程.水体底泥污染已经成为世界范围内的一个环境问题.文章采用人工湿地控制(生态滤池)试验与野外布点调查取样相结合的方法,以芦苇(Phragmites australis Dar.Baiyangdiansis)为供试植物,系统地研究了白洋淀地区底泥现状和污染程度及在芦苇生境下其化学性质等所发生的一系列转化和演变情况,并针对芦苇对底泥的净化及受污染底泥异地的无害化处理进行了研究.结果表明:随着底泥用量的增加,芦苇的长势、生物量、株高等也增加.底泥用量大(3#池)则底泥中污染物含量动态变化明显.在一年的时间里,各滤池底泥中营养元素的含量总体趋势是降低的,其中以碱解氮降低幅度最大;有效态Cu的含量有所上升,有效态Zn、Cd、Pb含量变化幅度小,只是略微有所下降.因为芦苇生长带走了一部分有效态元素物质,底泥内各种元素总量有所降低,其有效态重金属含量变化不明显,只是略有下降,说明芦苇根系会影响底泥中重金属的存在形态.     

Diel cycles of expansion and contraction in coral reef anthozoans

Diel patterns of expansion and contraction are widespread in coral reef anthozoans, yet no theory adequately explains this behavior. We have observed a wide variety of behavior patterns in 14 sea anemone species at 9 sites along the Caribbean coast. The distribution of zooxanthellae in anemone tissues was quantified by sectioning preserved specimens and calculating zooxanthella density in the endoderm. We show that polyp structures containing dense populations of zooxanthellae respond positively to light (expansion, positive orientation) and those with few or no zooxanthellae respond negatively (contraction, negative orientation). Structures capable of prey capture, feeding tentacles, are expanded at night when prey is available. Structures adapted for photosynthesis, auxiliary structures of the column and tentacles with dense zooxanthellae, are expanded during the day. Such independent reactions of structures acting as functional units for photosynthesis and/or prey capture combine to give the observed variety of behavior patterns. We hypothesize that the need to conserve limiting nutrients and energy could be the ultimate cause of expansion and contraction rhythms in coral reef anthozoams.     

Temperature-induced changes in the formation of sulphide in a marine sediment

The influence of temperature upon sulphide formation was investigated with sediment sulphureta incubated at constant temperatures in the laboratory. The concentrations of sulphate, sulphide and pyrite were periodically measured and it was found that, in addition to a decrease in the rate of sulphide formation with temperature, there was a changes in the origin of the sulphide. Thus, at 5° and 10°C, the majority of sulphide originated from organic sulphur, while sulphate contributed the greater proportion of the sulphide at 20° and 30°C. Such changes presumably reflect those in the natural enviroment during winter and summer.