Sympatry of distinct mitochondrial DNA lineages in a copepod inhabiting estuarine creeks in the southeastern USA

The population genetic structure of the meiobenthic harpacticoid copepod Microarthridion littorale (Poppe) was examined with a geographic survey of a 348 bp fragment of the mitochondrial cytochrome b gene. Copepods were collected from ten locations on the coast from North Carolina to Georgia, USA, from January 1997 to November 1998. Sequence divergence among 198 individuals was as much as 4.3%, and three divergent mitochondrial clades were uncovered that differed by six to nine nucleotide changes. A rapid assay was developed to distinguish among mitochondrial clades, and an additional 333 specimens were surveyed. The three lineages co-occurred in seven of ten sampling locations. Data analyses were carried out separately for individuals assayed by DNA sequencing as well as for a combined data set that included individuals typed by restriction endonuclease digestion. An analysis of molecular variance indicated that a significant proportion of the total genetic variance could be partitioned among populations, although no significant correlation between geographical and genetic distance was detected.     

Sympatric size variants of the microcopepod Oncaea venusta exhibit distinct lineages in DNA sequences

We investigated the phylogenetic relationships among different size groups of the pelagic microcopepod Oncaea venusta Philippi, 1843, by comparing the patterns of genetic variation of specimens collected at five locations of the Indo-West Pacific Ocean. Phylogenetic analyses were based on sequence data obtained from two DNA markers: A 310 bp fragment of the mitochondrial cytochrome b (cyt b) gene and a 480 bp fragment of the nuclear internal transcribed spacer 1 (ITS1). The cyt b sequences showed a much higher level of variation than those from ITS1, but the conclusion from both genes was concordant. Four genetic clades could be differentiated. A small- and a large-size group were unambiguously assigned to two distinct clades or lineages. Unexpectedly, the medium-sized individuals could be divided into another two different genetic clades. All four lineages were supported by high bootstrap values. The high levels of sequence divergence under sympatric conditions indicated that at least the two main groups, the large and the small one, may be assigned to different species. For the medium-size group additional morphological studies and more sensitive nuclear markers are required to clarify their taxonomic status.     

Disjunct Sea of Cortez–Pacific Ocean Gillichthys mirabilis populations and the evolutionary origin of their Sea of Cortez endemic relative, Gillichthys seta

The shortjaw mudsucker, Gillichthys seta, an intertidal goby endemic to the Sea of Cortez, has been proposed to be the paedomorphic derivative of the longjaw mudsucker, Gillichthys mirabilis. G. mirabilis is a disjunct species, with populations found along the Pacific coast of central California to central Baja California, and with isolated populations found in the northern Sea of Cortez. Previous studies have suggested that the endemic paedomorph form speciated in sympatry with the Sea of Cortez population of G. mirabilis. Alternatively, this speciation event could have occurred before the separation of G. mirabilis populations into two disjunct entities. To test these alternative hypotheses, we collected adult individuals from both species throughout their ranges from December 1997 to November 1998. We amplified and sequenced 142 partial [527 base pairs (bp)] mitochondrial cytochrome b regions and 18 nuclear creatine kinase introns (140 bp). We found that Pacific populations of G. mirabilis separated into two distinct clades, possibly reflecting a phylogeographic break found in other fish species along the Baja California coast at Punta Eugenia. These two Pacific populations were well separated from Sea of Cortez populations. Furthermore, our results indicate that the split between Sea of Cortez and Pacific populations of G. mirabilis occurred well after the speciation event that separated G. mirabilis from its paedomorphic counterpart, G. seta. Received: 30 March 2000 / Accepted: 4 September 2000     

Population genetic structure of escolar (<Emphasis Type="Italic">Lepidocybium flavobrunneum</Emphasis>)

Escolar (Lepidocybium flavobrunneum) is a large, mesopelagic fish that inhabits tropical and temperate seas throughout the world, and is a common bycatch in pelagic longline fisheries that target tuna and swordfish. Few studies have explored the biology and natural history of escolar, and little is known regarding its population structure. To evaluate the genetic basis of population structure of escolar throughout their range, we surveyed genetic variation over an 806 base pair fragment of the mitochondrial control region. In total, 225 individuals from six geographically distant locations throughout the Atlantic (Gulf of Mexico, Brazil, South Africa) and Pacific (Ecuador, Hawaii, Australia) were analyzed. A neighbor-joining tree of haplotypes based on maximum likelihood distances revealed two highly divergent clades (δ = 4.85%) that were predominantly restricted to the Atlantic and Indo-Pacific ocean basins. All Atlantic clade individuals occurred in the Atlantic Ocean and all but four Pacific clade individuals were found in the Pacific Ocean. The four Atlantic escolar with Pacific clade haplotypes were found in the South Africa collection. The nuclear ITS-1 gene region of these four individuals was subsequently analyzed and compared to the ITS-1 gene region of four individuals from the South Africa collection with Atlantic clade haplotypes as well as four representative individuals each from the Atlantic and Pacific collections. The four South Africa escolar with Pacific mitochondrial control region haplotypes all had ITS-1 gene region sequences that clustered with the Pacific escolar, suggesting that they were recent migrants from the Indo-Pacific. Due to the high divergence and geographic separation of the Atlantic and Pacific clades, as well as reported morphological differences between Atlantic and Indo-Pacific specimens, consideration of the Atlantic and Indo-Pacific populations as separate species or subspecies may be warranted, though further study is necessary.     

Molecular relationships and species divergence among <Emphasis Type="Italic">Phragmatopoma</Emphasis> spp. (Polychaeta: Sabellaridae) in the Americas

Phragmatopoma spp. are marine, reef-building polychaetes that inhabit the intertidal and shallow subtidal zones of both coasts of the Americas. Phragmatopoma californica is found in the Pacific Ocean along the California coast south to Mexico, while Phragmatopoma caudata inhabits the Caribbean islands and Atlantic Ocean from the Florida coast south to Brazil. Although apparently geographically isolated, P. californica and P. caudata have been found to interbreed (Pawlik 1988a) and thus their specific taxonomic relationship has been unclear. In this study, two genes, cytochrome c oxidase subunit I (COI) and the first internal transcribed spacer region (ITS-1), were sequenced to assess the specific status of P. californica and P. caudata as well as Phragmatopoma virgini. Comparison of sequences revealed that samples of P. californica shared no COI haplotypes or ITS-1 sequences with P. caudata. Phylogenetic analyses, including maximum parsimony and Bayesian methods, clustered each species in separate, well-supported clades with genetic distances between them being greater than between either contested species or the uncontested, valid species, P. virgini. Thus, the molecular data support that P. californica and P. caudata are separate species. However, the sample of individuals of P. virgini included one genetically divergent individual, whose morphology was found to match that of a species formerly recognized as P. moerchi but since synonymized with P. virgini. Divergences among lineages were dated using the COI sequences, after adjustment for non-clock-like behavior. Consequently, we suggest that P. virgini and P. caudata are sister taxons and that P. californica diverged from the P. virgini/P. caudata clade ∼5.7 mya with P. virgini diverging from P. caudata ∼3 mya.     

Predominance of clade D <Emphasis Type="Italic">Symbiodinium</Emphasis> in shallow-water reef-building corals off Kish and Larak Islands (Persian Gulf,Iran)

Scleractinian coral species harbour communities of photosynthetic taxa of the genus Symbiodinium. As many as eight genetic clades (A, B, C, D, E, F, G and H) of Symbiodinium have been discovered using molecular biology. These clades may differ from each other in their physiology, and thus influence the ecological distribution and resilience of their host corals to environmental stresses. Corals of the Persian Gulf are normally subject to extreme environmental conditions including high salinity and seasonal variation in temperature. This study is the first to use molecular techniques to identify the Symbiodinium of the Iranian coral reefs to the level of phylogenetic clades. Samples of eight coral species were collected at two different depths from the eastern part of Kish Island in the northern Persian Gulf, and Larak Island in the Strait of Hormuz. Partial 28S nuclear ribosomal (nr) DNA of Symbiodinium (D1/D2 domains) were amplified by polymerase chain reaction (PCR). PCR products were analyzed using single stranded conformational polymorphism and phylogenetic analyses of the LSU DNA sequences from a subset of the samples. The results showed that Symbiodinium populations were generally uniform among and within the populations of eight coral species studied, and there are at least two clades of Symbiodinium from Kish and Larak islands. Clade D was detected from eight of the coral species while clade C was found in two of species only (one species hosted two clades simultaneously). The dominance of clade D might be explained by high temperatures or the extreme temperature variation, typical of the Persian Gulf. Publication of this article was held up owing to technical problems. The publisher apologizes sincerely for this lengthy delay.     

Genetic structure of round scad mackerel <Emphasis Type="Italic">Decapterus macrosoma</Emphasis> (Carangidae) in the Indo-Malay archipelago

Round scad mackerel sampled in 1995-1998 were analysed for genetic variation using mitochondrial-DNA and nuclear-DNA markers. Sequence variation for a fragment of the cytochrome b gene (mitochondrial), amplified by polymerase chain reaction, was screened across individuals using single strand conformation polymorphism (SSCP). Sequence analysis of all SSCP haplotypes indicated two mitochondrial clades separated by, on average, 2.3% nucleotide divergence. The geographic distribution of haplotypes was homogeneous (Weir and Cockerham's [^(q)] \hat \theta =-0.002). Also, no geographic heterogeneity was detected for length polymorphism of Intron 1 of the gene encoding aldolase B ([^(q)] \hat \theta =0.005). Although homogeneity in allele frequencies throughout the Indo-Malay archipelago conformed to the expectations for a widely distributed pelagic fish in a highly connected habitat, this was at variance with the sharp geographic structure previously uncovered in Indian scad mackerel, Decapterus russelli, a fish with life-history characteristics similar to D. macrosoma. A remarkable similarity, however, was the occurrence of two similarly distinct clades within each species, suggesting a common history of geographic isolation. Low sea levels in the Pleistocene might have caused the separation and vicariance of populations within both D. macrosoma and D. russelli. Subsequent genetic exchange between populations would then have erased allele-frequency differences at the cytochrome b and aldolase B loci in D. macrosoma while some barrier to gene flow was maintained in D. russelli.     

Population dynamics of three estuarine meiobenthic harpacticoids (Copepoda) in South Carolina

To elucidate the population dynamics of abundant meiofauna, a 15-month field study of 3 species of harpacticoid copepods was conducted in a South Carolina (USA) estuary. Per capita birth and death rates and average brood size (number of eggs per adult female) were lowest for Enhydrosoma propinguum (Brady), Microarthridion littorale (Poppe), and Stenhelia (Delavalia) bifidia (Coull) from November–February, indicating that food or density-independent factors such as temperature regulated winter densities. Reproduction for all species began in February, with the first appearance of copepodites approximately 1 month later. From March–October, M. littorale displayed high per capita birth and death rates (>0.6 individual^-1 day^-1), and high average brood size (8 to 9 eggs per adult female). As this species is epibenthic, and thus susceptible to grazing by detritivores, these data suggest that M. littorale was limited by predation. S. (Delavalia) bifidia displayed a sharp increase in density, birth rate and average brood size in July, but birth and death rates (0.3 individual^-1 day^-1) were always lower than those of M. littorale and average brood size gradually decreased from July–December. As this species burrows and is less susceptible to grazing predation, these data are consistent with the hypothesis that S. (Delavalia) bifidia became food-limited as population growth approached its carrying capacity. Although E. propinguum was the most abundant species, quantification of birth potential was not accomplished due to an underestimate of the number of ovigerous females. Therefore, little can be concluded about the mechanism of the summer density regulation of E. propinguum.Contribution No. 274 from the Belle W. Baruch Institute for Marine Biology and Coastal Research, University of South Carolina.     

Phylogeography of the ocean quahog (Arctica islandica): influences of paleoclimate on genetic diversity and species range

The ocean quahog, Arctica islandica (Linnaeus, 1767), is a commercially important bivalve found on continental shelves throughout much of the North Atlantic. To assess genetic subdivision in this species, we sequenced 385 nucleotides of the mitochondrial cytochrome b (cyt b) gene from 83 specimens collected from 12 localities between September 1998 and July 1999 (based on preliminary data, the Internal Transcribed Spacers, ITS, of the nuclear ribosomal repeat were not useful). The cyt b data delimited 11 haplotypes with 0.26 to 8.1% nucleotide difference (coded by 36 variable nucleotide positions) among them. Only three haplotypes were detected in 39 specimens collected along the USA coastline, compared to five haplotypes from nine Icelandic individuals. The western Atlantic populations ranging from Penobscot Bay (Maine, USA) to southern Virginia showed relatively low diversity and appeared genetically similar in that region. Based on the presence of shared haplotypes, AMOVA analyses, and phylogenetic reconstructions, Icelandic populations appear to be more genetically similar to western Atlantic populations than eastern Atlantic populations. Specimens from the Faroe Islands (n=4) show mixed affinities. These data are consistent with the hypothesis that a warm Holocene climatic optimum (ca. 7,500 years BP), and not glacial refugia, shaped the present-day genetic structure in A. islandica. Received: 18 January 2000 / Accepted: 26 June 2000     

Species boundaries in the starfish genus Linckia

 The genetic basis for species boundaries in the starfish genus Linckia was examined using variation observed in 613 base pairs (bp) of sequence from the cytochrome oxidase I gene of mtDNA and 16 allozyme loci. Five groups within Linckia were clearly genetically differentiated; L. columbiae, L. bouvieri, two clades within L. guildingi, and one clade with two sub-clades consisting of both L. laevigata and L. multifora. Genetic divergence among these groups is consistent with interspecific variation. The two clades within L. guildingi suggest the presence of a cryptic, partially sympatric, species. Genetic divergence between these two clades implies that they have been genetically distinct from each other for at least one million years. In contrast, genetic data suggest that L. laevigata and L. multifora are a single species, despite the fact that live individuals can be distinguished by their colour and colour pattern, number of madreporites and ratio of arm length to breadth. There are probably three closely related groups within the L. laevigata/L. multifora clade –L. multifora, and two groups in L. laevigata defined by biogeographic province. It is difficult to determine boundaries for these three entities, since genetic and morphological differences are complicated by phenotypic differences arising from both environmental variation and population genetic structure. The difficulties encountered in defining species boundaries in Linckia, particularly with respect to variation arising from the overlap of Indian and Pacific biogeographic provinces, may be a general issue for many marine organisms from this region. Received: 24 May 1999 / Accepted: 6 October 1999     

Zoogeography of fish parasites of the pearlside (Maurolicus muelleri), with genetic evidence of Anisakis simplex (s.s.) from the Mid-Atlantic Ridge

A total of 200 Maurolicus muelleri from the Mid-Atlantic Ridge (MAR) and the Norwegian Deep (ND) were studied for parasitic helminths. Two different metazoans were isolated from the MAR and five species from the ND. The predominant parasite species in both areas were tetraphyllidean cestode larvae (Scolex pleuronectis) and the anisakid nematode Anisakis simplex sensu stricto (s.s.), the latter being identified using genetic analysis of the internal transcribed spacer (ITS-1, ITS-2) and 5.8S regions of the rDNA. The parasite fauna of M. muelleri from the MAR was less species rich in comparison to ND, due to the deep-sea and oceanic environment. The digeneans Brachyphallus crenatus and Lecithaster confusus as well as the raphidascarid fish nematode Hysterothylacium aduncum were only collected from the ND. This can be explained either by the deep origin of the sampled fish specimens or the lack of suitable intermediate or final hosts in the region. Based on the frequent occurrence of A. simplex (s.s.) around the MAR and the ND, a pelagic life cycle is suggested at both localities, involving baleen and toothed whales as final and pelagic and mesopelagic fish and invertebrates as intermediate or paratenic hosts.     

Phylogeographic patterns of the mysid Mesopodopsis slabberi (Crustacea, Mysida) in Western Europe: evidence for high molecular diversity and cryptic speciation

The phylogeographic patterns among populations of Mesopodopsis slabberi (Crustacea, Mysida), an ecological important mysid species of marine and estuarine habitats, were analysed by means of DNA sequencing of a fragment of the mitochondrial cytochrome c oxidase subunit I (COI) and the 16S ribosomal RNA genes. Samples of M. slabberi collected from five Atlantic and two Western Mediterranean populations were investigated. Very high levels of within-population molecular diversity were observed in all samples (mean h=0.807 and π=0.0083), with exception of the Mediterranean Ebro population which contained only one haplotype. Differentiation among populations was high, and a clear phylogeographic break was observed between the Atlantic and Mediterranean populations. Moreover, a strong differentiation was detected between both populations in the Western Mediterranean Sea (Alicante and Ebro delta), while two divergent lineages occurred in sympatry within the Atlantic Mondego estuary. The high congruence between both the COI and 16S rRNA sequence data, the reciprocal monophyly of the different mitochondrial clades and the levels of nucleotide divergence between them suggest the presence of a complex of cryptic species within M. slabberi. Estimations of divergence time between the different mitochondrial lineages indicate that a split occurred during the late Miocene/early Pliocene. Such a divergence could be concordant with vicariant events during sea-level drops within the Mediterranean region at that time. However, within the Mediterranean Sea, the potential of divergence through ecological diversification cannot be ruled out.     

Variation in life-history patterns between intertidal and subtidal populations of the meiobenthic copepod Microarthridion littorale

Life history patterns of the meiobenthic harpacticoid copepod Microarthridion littorale (Poppe) differed between intertidal and subtidal sites in a South Carolina, USA estuarine salt-marsh system. Throughout the summer and fall, densities of M. littorale were significantly greater intertidally than subtidally; however, for the remainder of the year the population sizes were not statistically different. Maximum densities occurred intertidally in July and subtidally in October. The number of eggs · gravid female^-1 was significantly greater subtidally than intertidally at all times. The mean length of all adults increased from summer to spring and was similar between areas. Birth rates and death rates paralleled one another in each area and with the exception of August, birth rates were higher subtidally than intertidally. Juvenile mortality appeared highest subtidally, the mortality apparently occurring in the early naupliar stages. The variation in life history patterns across the tidal gradient was likely the result of differences in food quality and quantity, increased exposure to potential epibenthic predators subtidally, and to differential competitive pressure in the 2 areas.     

Morphological and molecular comparisons of dominant amphioxus populations in the China Seas

The amphioxi Branchiostoma belcheri, Branchiostoma japonicum and Branchiostoma malayanum are recorded from the coast of China Seas. Six amphioxus populations comprising three Branchiostoma species collected from Hong Kong (southern China), Xiamen (south-eastern China) and Qingdao (northern China) were compared at the morphological and molecular levels. Phylogenetic separations among the species and geographic populations were evaluated by the analysis of 12S ribosomal RNA gene sequences and amplified fragment length polymorphism (AFLP) markers. From morphological characters, B. belcheri is more closely related to B. japonicum than to B. malayanum. However, phylogenetic affinities indicated by both 12S rRNA gene sequences and AFLP analysis showed a more recent phylogenetic splitting of B. belcheri and B. malayanum than that of B. belcheri and B. japonicum. In the AFLP similarity tree, geographic populations of B. japonicum were clustered into different clades. The AFLP data also showed that both B. belcheri and B. japonicum populations in Hong Kong have the highest levels of within-population genetic diversity as compared to that in Xiamen and Qingdao, suggesting that genetic diversity of Branchiostoma decreases from low to high latitudes. Results of hierarchical analysis of molecular variance (AMOVA) also revealed a high level of genetic diversity either for the three B. japonicum populations or the two B. belcheri populations in China Seas. However, genetic variation among the three B. japonicum populations was insignificant, indicating that these populations are genetically connected.     

Genetic evidence for two distinct clades in a French Polynesian population of the coral reef three-spot damselfish<Emphasis Type="Italic"> Dascyllus trimaculatus</Emphasis>

Previous studies have shown that the three-spot damselfish species complex [ Dascyllus albisella Gill, D. auripinnis Randall and Randall, D. strasburgi Klausewitz, D. trimaculatus (Ruppell)] is an assemblage of five geographically distinct clades. The one exception was a single D. trimaculatus from French Polynesia, which grouped with "Pacific Rim" individuals. In the present study, an additional 252 individuals from French Polynesia collected between June 1996 and January 2002 were analyzed using PCR amplifications, restriction fragment length polymorphisms, and DNA sequencing of the mitochondrial control region. The French Polynesian D. trimaculatus belong to two distinct clades. One clade comprising 96% of the individuals includes haplotypes found only in French Polynesia. The other clade (4% of the individuals) is comprised of haplotypes that cluster with "Pacific Rim" individuals, a clade with widespread distribution from Japan to the Line Islands and from Wallis to Palau. Present data suggest that a small number of larvae from northwestern reefs (possibly Line Islands) may have occasionally reached and colonized French Polynesian reefs.     

Mitochondrial gene variation in Mercenaria clam sibling species reveals a relict secondary contact zone in the western Gulf of Mexico

We investigated phylogeographic relationships among American Mercenaria taxa by assessing variation in a 444 nucleotide fragment of the mitochondrial 16S ribosomal gene in clams sampled from four representative sites in January to November 1994. Three of these sites were in the Gulf of Mexico, one was on the Atlantic coast in South Carolina. Direct sequencing of this amplified gene fragment in 85 individuals revealed 21 haplotypes. Phylogenetic analyses consistently resolved this variation into three well supported clades, and within-clade genetic divergence levels were markedly lower than among-clade values. One of the clades, A, was taxon-specific, in that it solely and exclusively contained specimens of M. mercenaria (Linnaeus, 1758) sampled in South Carolina. The other two clades, B and C, were the most divergent and both encompassed specimens of M. campechiensis (Gmelin, 1791) and of M. campechiensis texana (Dall, 1902), sampled from the three Gulf of Mexico sites. Clade B was found at high frequencies at all three Gulf sites, whereas Clade C occurred at low frequencies at two western Gulf sites. We interpret this pattern as resulting from the secondary contact and introgression of two allopatrically differentiated Mercenaria taxa in the western Gulf of Mexico. Clade C haplotypes may represent relict mitochondrial lineages from original Gulf Mercenaria spp. populations that predate massive mitochondrial introgression by M. campechiensis. We further propose that the M. campechiensis texana nuclear genome is a mosaic, heavily weighted toward M. campechiensis, but containing some relict alleles inherited from the precontact population, especially those governing shell characteristics, which may be adaptive in cohesive sediments of bays and estuaries in the northwestern Gulf of Mexico.     

Comparison of absolute and relative growth patterns among five <Emphasis Type="Italic">Pinna nobilis</Emphasis> populations along the Tunisian coastline: an information theory approach

The variability in absolute and relative growth of Pinna nobilis along the Tunisian coastline was investigated. Five populations of P. nobilis were sampled, three from northern and two from eastern Tunisia. The specimens were aged and ten morphometric characters were measured on each individual. To test if differences existed in absolute and relative growth patterns among the different populations an information theory approach was followed. For absolute growth, von Bertalanffy, Gompertz, the logistic and the power models were fitted in combination with three assumptions regarding inter-population differences in absolute growth patterns: no differences, differences among all five populations or just between northern and eastern populations. The assumption of common absolute growth parameters among all five populations had the greatest support by the data, whereas the assumption of different growth patterns among all five populations had no support. Von Bertalanffy growth model and the power model were both equally supported by the data (while Gompertz had considerably less support and the logistic model had no support), and thus it may not be definitely concluded whether P. nobilis grows asymptotically or not. The P. nobilis populations of the Tunisian coastline had a slow growth and up to an age of ∼ 9 years their shells were smaller than from all other reported populations in the Mediterranean. For relative growth, apart from the classical allometric model Y = aX ^b , relating the size of a part of a body Y to another reference dimension X, more complicated models were used in combination with the three abovementioned assumptions regarding inter-population differences. Those models, of the form logY = f (logX), either assumed breakpoints in the relative growth trajectories or non-linearities. For most morphometric characters, the classical allometric model had no support by the data and more complicated models were necessary. In most cases, different relative growth either among all five populations or between the northern and eastern population groups was supported by the data. Further investigation is needed to relate the morphological differences observed among different populations of P. nobilis to environmental factors.     

A study of osteological and molecular differences in populations of Aphanius fasciatus Nardo 1827, from the central Mediterranean (Teleostei, Cyprinodontidae)

Nine populations of Aphanius fasciatus Nardo, 1827 from the central Mediterranean were analysed by examining the mitochondrial control region and the morphology of the bony elements of the skull and vertebral column, to study the degree of intraspecific differentiation of A. fasciatus considering the level of isolation of the different populations and the palaeogeographic history of the central Mediterranean area. Both the molecular and morphological analyses differentiate between the populations, even if the topologies of the two trees are different. Molecular and osteological investigations have consistently demonstrated a well-supported differentiation of the south-eastern Sicilian populations both within the same group (Tigano et al. in Ital J Zool 71:1124–1133, 2004a; Tigano et al. in Abstract volume XI European Congress of Ichthyology, Tallin, Estonia, 2004b), and from the populations from western Sicily, Tunisia and the island of Malta. The molecular results show that the nine populations are characterised by haplotypes that are well defined in relation to a probably limited gene flow; while, as regards the morphological data the differentiation found could be explained in terms of the geographic isolation of the various populations, although the influence of environmental factors, which differ greatly between the various sites where the populations live, cannot be ruled out.     

Phylogenetic relationships of coral-associated gobies (Teleostei,Gobiidae) from the Red Sea based on mitochondrial DNA data

Bryaninops, Gobiodon, Paragobiodon and Pleurosicya are the most abundant genera of coral-associated gobies. These genera are adapted to live among coral, while other small reef gobies (e.g., the genus Eviota) show no obligate association with this living substrate. Thirteen coral-associated species and two Eviota species were sampled from different regions of the Red Sea, along with four populations/species of Gobiodon from the Indian and western Pacific Oceans. A molecular phylogenetic analysis was performed using partial sequences of 12S rRNA, 16S rRNA and cytochrome b mitochondrial genes, 1,199 base pairs in total. Several clades were consistently resolved in neighbor joining-, maximum parsimony-, maximum likelihood and Bayesian analyses. While each of the four genera Gobiodon, Paragobiodon, Bryaninops and Pleurosicya proved to be monophyletic, their relative position in the phylogeny did not support an emergence of coral-associated gobiids as a monophyletic assemblage. Instead, two separate monophyletic sub-groups were discovered, the first comprising Gobiodon and Paragobiodon, and the second Bryaninops and Pleurosicya. Our molecular phylogenetic examinations also revealed one unassigned species of Gobiodon from the Maldives as a distinct species and confirmed three putative and yet unassigned species from the Red Sea. Moreover, the uniformly black colored species of Gobiodon are not monophyletic but have evolved independently within two distinct species groups. Genetic distances were large in particular within Pleurosicya and Eviota. Estimated divergence times suggest that coral-associated gobies have diversified in parallel to their preferred host corals. In particular, divergence times of Gobiodon species closely match those estimated for their typical host coral genus Acropora.     

Molecular evidence for multiple lineages in the gorgonian family Plexauridae (Anthozoa: Octocorallia)

Octocorals are diverse and abundant on many marine hard substrates, and, within this group, members of the family Plexauridae are an important component of tropical reef assemblages, especially in the Caribbean. To understand historical relationships within this large and diverse assemblage, and to test the monophyly of the family and some of its genera, DNA sequences of two mitochondrial loci (msh1 and ND2, ~1,185 bp) were analyzed from 46 species in 21 genera from deep and shallow waters in the tropical western Atlantic and in the tropical western and eastern Pacific (plus 9 taxa in the closely related Gorgoniidae and 1 species of the more distantly related Alcyoniidae). Five strongly supported clades were recovered. Three large clades correspond roughly to the Plexauridae, Paramuriceidae, and Gorgoniidae, and two smaller clades were comprised of taxa previously assigned to several families. Astrogorgia sp. did not group with any of the clades. The mutual relationships among the five clades remain unclear. Several genera previously regarded as unrelated appear to be grouped among the three families; e.g. Hypnogorgia sp. (Paramuriceidae) falls within a clade consisting of both Pacific and Atlantic Muricea spp. (Plexauridae), while Swiftia sp., Scleracis sp., and an Atlantic Thesea sp. (all Paramuriceidae) group with the gorgoniids. In several instances, genera containing Atlantic and Pacific species were recovered as monophyletic (Muricea spp., Bebryce spp.). However, in at least three cases (Echinomuricea spp., Thesea spp., Villogorgia spp.), placement of Atlantic and Pacific species in the same genus may reflect convergence of sclerite morphology. The results indicate a strong need for reexamination of octocoral taxonomy using a combination of molecular, morphological, and chemical evidence.Electronic Supplementary Material Supplementary material is available in the online version of this article at http://dx.doi.org/10.1007/s00227-005-1592-y.Communicated by J.P. Grassle, New Brunswick