The distribution of herbivorous fishes on the Great Barrier Reef

The composition and functionality of ecologically important herbivorous fish assemblages were examined throughout much of Australia’s Great Barrier Reef (GBR). Diversity and abundance of surgeonfishes (Acanthuridae), parrotfishes (Labridae) and rabbitfishes (Siganidae) were strongly associated with position on the continental shelf, whilst effects of latitude were weaker and inconsistent. Species distributions varied considerably amongst taxonomic groups; parrotfishes were mostly widespread whilst distributions of surgeonfishes were often restricted. Most inshore environments supported depauperate herbivore assemblages dominated by different taxa and functional groups compared with assemblages in offshore environments. There were also strong cross-shelf transitions in the main taxa performing each functional role. Overall, this study show that the functional contributions of herbivorous fish assemblages to important ecosystem processes and the contributing taxa vary considerably amongst different GBR environments. Additionally, the two most numerically dominant herbivores actively select detritus, not algae, supporting increasing evidence for the importance of detritus in coral reef ecology.     

The relationship between population genetic structure and pelagic larval duration in coral reef fishes on the Great Barrier Reef

Pelagic larval duration (PLD) is a commonly used proxy for dispersal potential in coral reef fishes. Here we examine the relationship between PLD, genetic structure and genetic variability in geographically widespread and ecological generalist species from one coral reef fish family (Pomacentridae) that differs in mean larval duration by more than a month. The genetic structure was estimated in eight species using a mitochondrial molecular marker (D-loop) and in a sub-set of five species using nuclear molecular markers (ISSRs). Estimates of genetic differentiation were similar among species with pelagic larvae, but differed between molecular markers. The mtDNA indicated no structure in all species except one, while the ISSR indicated some structure between the sampling locations in all species. We detected a relationship between PLD and genetic structure using both markers. These relationships, however, were caused by a single species, Acanthochromis polyacanthus, which differs from all the other species examined here in lacking a larval phase. With this species excluded, there was no relationship between PLD and genetic structure using either marker despite a range of PLDs of more than 20 days. Genetic diversities were generally high in all species and did not differ significantly among species and locations. Nucleotide diversity and total heterozygosity were negatively related to maximum PLD but again these relationships were caused by A. polyacanthus and disappeared when this species was excluded. These genetic patterns are consistent with moderate gene flow among well-connected locations and indicate that at this phylogenetic level (i.e., within family) the duration of the pelagic larval phase is unrelated to the patterns of genetic differentiation.     

Modelling the photosynthetic production by sponges on Davies Reef,Great Barrier Reef

Sponge populations on Australia's Great Barrier Reef (GBR) may contain a mix of both phototrophic and heterotrophic species. The distribution of many of these sponges on reefs is assumed to be determined by light. A model was developed to investigate how the distribution of phototrophic sponges over depth is restricted by the availability of photosynthetically active radiation. Estimates of the balance between photosynthetic production and the total respiratory demand of entire sponge communities on Davies Reef (a middle-shelf reef of the Great Barrier Reef) are provided. These estimates are based upon published data for community composition and biomass, whilst photokinetic parameters have been determined for a variety of sponge species from oxygenexchange measurements. Phototrophic sponges on the fore-reef slope are predicted to exist at or above a state of net 24 h compensation (i.e., photosynthetic oxygen production by sponges balances or exceeds respiration over a 24 h period) to a depth of 30 m. It is proposed that phototrophic sponges are obligate phototrophs because the availability of light for photosynthesis corresponds with the lower depth limit of their distribution. Sponge communities (including both phototrophs and heterotrophs) from the fore-reef and lagoon exist close to a state of net 24 h compensation to a depth of 10 to 15 m. This balance shows diurnal variations, associated with the activity of phototrophs, such that instantaneous compensation of the community may occur to depths of 20 to 25 m when light is maximal.     

Among-habitat variation in herbivory on Sargassum spp. on a mid-shelf reef in the northern Great Barrier Reef

Herbivory is widely acknowledged as a key process determining the benthic community structure and resilience of coral reefs. Despite numerous studies that have examined herbivory across reef gradients in the Caribbean, few studies have directly quantified this process on Pacific reefs. Bioassays of two species of erect macroalgae (Sargassum swartzii and S. cristaefolium) were used to quantify variation in grazing intensity across seven habitats of varying depth and wave exposure on a mid-shelf reef in the northern Great Barrier Reef. Removal rates of Sargassum varied significantly among habitats, with both species displaying broadly similar patterns. The shallow habitats on the exposed aspect of the reef (i.e. reef crest, flat and back reef) experienced the highest reductions in mass (81.4–91.6% day⁻¹) for both S. swartzii and S. cristaefolium, while the deeper exposed habitats (reef slope and base) displayed the lowest reductions (3.8–13.4% day⁻¹) over a 24 h period. In contrast, the grazing intensity varied between the two species in the three habitats on the leeward aspect of the reef. Reductions in mass remained relatively high for S. swartzii on the patch reef and sheltered reef base and flat (62.7–76.5% day⁻¹) but were considerably lower for S. cristaefolium (37.9–63.5% day⁻¹) across the same habitats. Surprisingly, the rates of removal of Sargassum displayed no relationship with the density or biomass of roving herbivorous fishes or those species known to consume erect macroalgae, either collectively or independently. These results suggest that the relationship between browsing rates and herbivorous fish biomass is complex and may be driven by species that are underestimated in visual surveys. Direct quantification of browsing intensity using assays revealed a different pattern to inferences based on herbivore densities and highlights the potential difficulties of evaluating ecosystem processes based on visual census data alone.     

Composition of the near-reef zooplankton at Heron Reef,Great Barrier Reef

Using a light trap, zooplankton was sampled at three stations at Heron Reef, Great Barrier Reef: (a) a typical patch reef in the Heron lagoon, (b) a site in 8 m water on the southern slope of Heron reef, and (c) a station approximately 300 m south of (b), in the open water of the channel between Heron and Wistari reefs. Samples were taken at the surface and on the substratum at the lagoon and reef-slope stations, and at 3 to 6 m depth at the open-water station. A total of 114 taxa, many recognized as species, were distinguished in the samples. Pronounced differences existed in abundance, diversity, and taxonomic composition of the samples obtained at different stations. Less pronounced differences existed between surface and substratum samples from the same station. Near-reef samples were more similar to one another than to open-water samples. Decapod larvae, amphipods, and cumaceans were all abundant in near-reef samples and very rare in open-water samples. Forams, isopods, mysids and polychaetes were common in near-reef samples, and rare or absent in open-water samples. Copepods were abundant in all samples but the near-reef samples contained predominantly different species than did samples from the open water. The near-reef fauna included 66 taxa which did not occur in open-water samples. Many of these were epibenthic rather than strictly planktonic in behaviour.     

Diversity,abundance, and distribution of reef sharks on outer-shelf reefs of the Great Barrier Reef,Australia

Quantifying the distribution and habitat use of sharks is critical for understanding their ecological role and for establishing appropriate conservation and management regimes. On coral reefs, particularly the Great Barrier Reef (GBR), little is known regarding the distribution of sharks across major reef habitat types. In this study, we surveyed shark populations across outer-shelf reefs of the GBR in order to determine the diversity, abundance, and distribution of reef sharks across three major coral reef habitats: (1) the reef slope, (2) the back reef and (3) the reef flat. Model selection revealed that habitat was the principal factor influencing shark distribution and abundance. Specifically, overall shark abundance and diversity were significantly higher on the reef slope (and to a lesser degree, the back reef) than the reef flat. This confirms that shark populations are not homogeneously distributed across coral reefs. Thus, the results presented herein have important implications for shark population assessments. In addition, our results highlight the potential importance of the reef slope, with high levels of live coral cover and structural complexity, for sustaining reef shark populations. As this habitat is highly susceptible to disturbance events, this study provides a useful context for predicting and understanding how environmental degradation may influence reef shark populations in the future.     

No apparent genetic basis to demographic differences in scarid fishes across continental shelf of the Great Barrier Reef

 Two species of parrot fish, Scarus frenatus and Chlorurus sordidus, are known to exhibit demographic and life-history differences across the continental shelf of the northern Great Barrier Reef (GBR). DNA sequences from the mitochondrial (mt) control region were analysed to determine whether there were genetic differences between the populations from the mid- and outer-shelf reefs. Analysis of molecular variance (AMOVA) indicated high levels of gene exchange for both species at a local scale between reefs on mid- and outer continental shelf positions (20 km apart) and at a broader scale along the length of the GBR province (>1000 km apart). There was no evidence to suggest that local differences in scarid life-history characteristics on the northern GBR have a genetic basis. Rather it appears more likely that phenotypically plastic responses to prevailing social and environmental conditions explain differences in the life-history characteristics of both taxa. However, analysis of genetic variation and historical demography revealed striking differences between the two species. S. frenatus haplotypes differed from one another at relatively few nucleotide sites (mean = 3.30), and the pairwise mismatch distribution suggested this species has undergone a population expansion within the limit of the resolution of the marker. C. sordidus haplotypes, however, differed from one another at a number of sites (mean = 7.67). Mismatch distribution analysis suggested that the population size of this species has remained at equilibrium over time. These patterns could also reflect differences in the metapopulation sizes or generation times between taxa. Some of the implications for fisheries management are discussed. Received: 28 January 2000 / Accepted: 9 July 2000     

Synchronous spawnings of 105 scleractinian coral species on the Great Barrier Reef

Following observations of mass spawning of hermatypic corals on the Great Barrier Reef in 1981 and 1982, spawning dates were successfully predicted and documented at five reefs on the Central and Northern Great Barrier Reef in 1983. During the predicted times, 105 species from 36 genera and 11 families were observed to spawn. Of these, 15 species were shown to have an annual gametogenic cycle. All but two of the species observed during mass spawnings shed gametes which underwent external fertilization and development. Synchronous spawning was observed both within and between the five reefs studied, which were separated by as much as 5° of latitude (500 km) or almost a quarter of the length of the Great Barrier Reef. The mass spawning of corals took place on only a few nights of the year, between the full and lastquarter moon in late spring. Maturation of gametes coincided with rapidly rising spring sea temperatures. Lunar and diel cycles may provide cues for the synchronization of gamete release in these species. The hour and night on which the greatest number of species and individuals spawned coincided with low-amplitude tides. Multispecific synchronous spawning, or mass spawning, of scleractinian and some alcyonacean corals represents a phenomenon which is, so far, unique in both marine and terrestrial communities.     

Coral-spawn slicks in the Great Barrier Reef: preliminary observations

Aerial surveys and surface samples in the spring of 1985, showed that slicks of coral eggs and embryos (coral spawn) formed in large numbers within and between reefs in the Central Great Barrier Reef Region. Coral-spawn slicks appeared on the days immediately following the annual mass multispecific spawning of reef corals. They were white or pink in colour, and were often highly elongate in form extending up to 5 km in length, and 10 m in width. Over 99% of each slick sampled during the surveys consisted of dead eggs, embryos and their breakdown products, which formed dense, highly viscous patches readily recognizable during aerial surveys. Despite the low proportion of live material, the slicks contained high concentrations of live embryos (15 to 230 per litre) which were over two orders of magnitude greater than concentrations in adjacent water masses. The distinctive colour, shape and texture of the coral-spawn slicks generally distinguished them from slicks formed by blooms of the blue-green alga Oscillatoria erythraea, which also occur commonly in the region. Many of the slicks were closely associated with surface oceanographic features, such as fronts between water parcels, and wakes and eddies behind reefs. Although more detailed sampling and surveys are required, these results suggest that it may be possible to track the movements of coral embryos and larvae directly for the first one or two days following mass spawning, and indirectly thereafter by monitoring other surface features.     

Distribution,abundance, and substrate preferences of demersal reef zooplankton at Lizard Island Lagoon,Great Barrier Reef

Demersal zooplankton, those plankton which hide within reef sediments during the day but emerge to swim freely over the reef at night, were sampled quantitatively using emergence traps planced over the substrate at Lizard Island Lagoon, Great Barrier Reef. Densities of zooplankton emerging at night from 6 substrate types (fine, medium, and coarse sand, rubble, living coral and reef rock) and from 5 reef zones (seaward face, reef flat, lagoon, back reef, and sand flat) were determined. A large population of nocturnal plankton including cumaceans, mysids, ostracods, shrimp, isopods, amphipods, crustacean larvae, polychaetes, foraminiferans and copepods are resident members of the reef community at Lizard Island. The mean density of plankton emerging throughout the reef was 2510±388 (standard error) zooplankton/m² of substrate. Biomass averaged 66.2±5.4 mg ash-free dry weight/m² of substrate. Demersal zooplankton exhibited significant preferences for substrate types and reef zones. The highest mean density of zooplankton emerged from coral (11,264±1952 zooplankton/m²) while the lowest emerged from reef rock (840±106 zooplankton/m²). The density of demersal plankton was six times greater on the face than in any other zone, averaging 7900±1501 zooplankton/m². Copepods dominated samples collected over living coral and rubble while foraminiferans, ostracods and decapod larvae were most abundant from sand. Plankton collected with nets at night correlated only qualitatively with plankton collected in emergence traps from the same location. Although abundant, demersal plankton were not numerous enough to meet the metabolic needs of all corals at Lizard Island Lagoon. Demersal plankton appear especially adapted to avoid fish predation. The predator-avoidance strategies of demersal plankton and maintenance of position on the reef are discussed. Our results indicate that much of the zooplankton over coral reefs actually lives on the reef itself and that previous studies using standard net sampling techniques have greatly underestimated plankton abundance over coral reefs.     

Significance of pelagic bacteria as a trophic resource in a coral reef lagoon,One Tree Island,Great Barrier Reef

Bacterial numbers and frequency of dividing cells (FDC) were estimated in surface waters at seven stations along a transeet across One Tree lagoon and reefs at 2 h intervals over one tidal cycle in May 1984 and once a day on 8 d in December 1984/January 1985. Cell numbers ranged between 1.24 and 13.10x10⁵ ml^-1, with an overall mean value of 4.81x10⁵. There was a progressive depletion in standing stock from windward to leeward stations across the lagoon, also reflected in the FDC, which generally showed similar dynamic patterns to cell numbers throughout the study. Predator-free seawater (filtered through 2 m pore-size filters) and mucus-enriched incubations were also used to establish the relationship between the growth rate () and FDC for coral-reef populations. Average growth rates predicted from FDC values ranged from 0.062 to 0.174 h^-1, which is equivalent to doubling times of 5.74 to 16.00 h, with an overall mean value of 11.5 h. These fast doubling times suggest that bacteria respond rapidly to pulses of enrichment as they float over the lagoon and reefs, characteristically achieving about one doubling per tidal cycle. This probably ensures that the bulk of labile organic matter and dissolved nutrients is conserved within the immediate coral-reef environment. Estimates of bacterial production also suggest that they may contribute up to 40% of total picoplankton production and about 25% of total microplankton production. Pelagic bacteria are therefore potentially a major food resource for benthic filter-feeders, especially for those mainly dependent on the smaller (pico) components of the plankton.     

Annual and spatial variation in recruitment of labroid fishes among seven reefs in the Capricorn/Bunker Group,Great Barrier Reef

Recruitment of labroid fishes to a lagoonal habitat within each of 7 reefs in the Capricorn/Bunker Group on the Great Barrier Reef was recorded for 2 yr (April 1982–April 1983). The density of recruitment of a species on one reef was not a good indicator of its density on other reefs. There were significant differences in the levels of recruitment between years. For several species, the ranking of reefs according to density of recruitment changed between years and the ranking of the two years changed among reefs. Recruitment varied differently for each species. Southern reefs were ranked more highly than northern reefs overall, but no North-South gradient was apparent. Populations of labroid fishes in the Capricorn/Bunker Group experience unpredictable variations in recruitment.     

Large-scale spatial variation in epilithic algal matrix cryptofaunal assemblages on the Great Barrier Reef

Spatial variation in the epilithic algal matrix (EAM) cryptofauna was investigated at three locations on the Great Barrier Reef: two inner shelf—Orpheus Island and the Turtle Island group—and a mid-shelf location, Lizard Island. Although the EAM appears to be a relatively simple and consistent habitat, significant differences in cryptofaunal assemblages were found between locations. EAM assemblages from Orpheus Island were markedly different. This appears to be a function of the sediment profile characteristics (grain size >60 µm) at Orpheus Island, as many cryptofaunal taxa displayed positive relationships with sediment volume. However, sediment volumes did not differ significantly between the three locations, highlighting the possibility of cyclonic activity affecting the sediment profile at Orpheus Island in the months preceding the study, in addition to the nutrient input from major terrigenous sources. The results of this study show that EAM cryptofaunal assemblages are not uniform across the Great Barrier Reef and suggest that dissolved nutrients, sediment loads and distance from river systems may be significant drivers of cryptobenthic faunal compositions.     

Uptake and clearance of diesel alkanes from sediments by the Great Barrier Reef gastropod Strombus luhuanus

Sediments from the reef flat at Heron Island, Great Barrier Reef, were treated with known amounts of diesel and the uptake and clearance characteristics of the diesel n-alkanes by the gastropod Strombus luhuanus, in the field and aquaria, were measured. In each case, the uptake curve was unusual in that the concentration, expressed in terms of wet weight, reached a maxima within 24 h and then declined to relatively low levels. The maximum concentrations reached were below that in the sediments. Within the range investigated, the alkanes exhibited a substantial decline in the uptake rate-constant with increasing carbon number, tricosane exhibiting approximately 25% of the uptake rate-constant of dodecane. On the other hand, persistence, measured as the half-life, showed an increase with carbon number. Dodecane had a half life of 0.6 d and octadecane one of 2.2 d.     

Diel patterns of emergence of crinoids (Echinodermata) from within a reef at Lizard Island,Great Barrier Reef,Australia

Periods of emergence of nine species (88 individuals) of crinoids (Comanthus parvicirrus, Clarkcomanthus albinotus, Comaster multifidus, Oxycomanthus comanthipinna, Oligometra serripinna, Comanthus gisleni, Comanthus wahlbergi, Comatula purpurea, and Oxycomanthus exilis) were monitored at Lizard Island, Queensland, over seven days in March 1983. One species (O. serripinna) was fully exposed and the others partially exposed. Two patterns of emergence were species-specific: emergent both day and night, and emergent only at night. Intraspecific exposure patterns were generally synchronous in six species and asynchronous in three species. The number of species visible was relatively constant during all dives, while at least twice as many individuals were visible at night compared to day. Degree of emergence was determined as the number and length of arms extended into the water column. Except for species fully exposed, degree of crinoid emergence was generally minimal at midday and maximal at twilight and night. Increases in both number of crinoids visible, and the amount of an individual's emergence, corresponded to decreasing light intensities, even during daytime. It is suggested that the patterns of exposure are a response to increased prey abundance at twilight and night, and also a means of avoiding diurnal predators. Gonads on the longest arms of some partially exposed crinoids were not extended into the water, thus protecting the gonads from predators.     

Production and reworking of sediment by parrotfishes (family Scaridae) on the Great Barrier Reef,Australia

Sediment produced by parrotfishes (family Scaridae) may comprise new bioeroded material and/or reworked sediment. The relative contribution of the two components was examined in two bioeroding Chlorurus species, C. gibbus and C. sordidus, from Lizard Island in the Northern Great Barrier Reef. The relative importance of reworked sediment was determined based on direct estimates of sediment ingestion. In C. gibbus, 2.4% of the sediment produced is reworked. In C. sordidus, reworking contributes 27.2%. Comparisons of sediment size-distributions in epilithic algal communities, gut contents and defaecation sites suggest that both C. gibbus and C. sordidus markedly decrease the particle size of sediment as a result of ingestion and trituration in the pharyngeal apparatus.     

Vertical distribution of fish larvae in the Great Barrier Reef Lagoon,Australia

To investigate the natural defenses of Antarctic marine organisms against exposure to ultraviolet (UV) radiation (280 to 320 nm), 57 species (1 fish, 48 invertebrates, and 8 algae) were collected during austral spring 1988 in the vicinity of Palmer Station (Anvers Island, Antarctic Peninsula) and were analyzed for the presence of mycosporine-like amino acids (MAAs), compounds that absorb UV radiation and may provide shielding from these biologically hazardous wavelengths. Nearly 90% of the 57 species examined contained MAAs, and eight specific MAA compounds were identified. Seven of these (palythine, porphyra-334, shinorine, mycosporineglycine, palythene, asterina-330, and palythinol) have been observed previously in marine organisms from temperate and tropical latitudes. A new MAA, mycosporineglycine: valine, was found in the Antarctic fish and in 38 of the invertebrate species examined. This study confirms widespread occurrence of MAAs in Antarctic marine organisms and suggests that these species have some degree of natural biochemical protection from UV exposure.Contribution No. 502 from the Australian Institute of Marine Science     

Disease and cell death in white syndrome of Acroporid corals on the Great Barrier Reef

White syndromes (WS) are among the most prevalent coral diseases, and are responsible for reef demise on the Great Barrier Reef. The disease manifests as a clear differentiation between tissue and exposed skeleton and results in rapid tissue loss. Fluorescence in situ hybridisation (FISH) was used in conjunction with histology and transmission electron microscopy (TEM) to investigate bacterial communities and cell death associated with WS. No evidence of bacterial communities or microbial association (using six bacterial probes, TEM and histopathology) was evident within the lesion or adjacent tissues, despite the presence of dense possible secondary invaders in the exposed skeletal regions. Despite widespread reference to necrosis in coral disease literature, there was no evidence of necrosis in any WS lesion or the adjacent tissues in this study. However, in situ end labelling, light microscopy and TEM of WS and healthy coral tissue sections showed evidence of extensive programmed cell death (PCD) exclusively in WS. This study provides the first evidence of intrinsic or PCD as a primary mechanism of cell death in WS, and may provide some explanation for the failure to isolate pathogens from over 80% of identified coral diseases, many of which show similar lesion patterns and WS characteristics.     

Cross-shelf distribution of copepods and fish larvae across the central Great Barrier Reef

The distribution of total dry weight of zooplankton, copepod numbers and ichthyoplankton across the outer continental shelf in the central Great Barrier Reef was examined at bi-weekly intervals for three months over summer of 1983. Copepods were sampled (236 m net) within 10 m of the surface and within 10 m of the bottom. Mean densities in surface waters decreased markedly from the mid-shelf to outer shelf and the Coral Sea, but no cross-shelf gradient occurred in the bottom-water. Densities of copepods on the mid-shelf (surface and bottom waters) and in bottom-waters of the outer shelf were typically ca. 400 m^–3. Significantly lower densities (ca. 100 m^–3) occurred in surface waters of the outer shelf, except during outbursts of Acartia australis, when densities in these waters differed little from those elsewhere on the shelf. In oceanic waters, 10 km from the outer shelf station, copepod densities in surface waters were ca. 40 m^–3. Four of the five most abundant copepod taxa in surface waters, Paracalanus spp., Eucalanus crassus, Acrocalanus gracilis and Canthocalanus pauper, tended to be most abundant at the mid-shelf end of the transect. Acartia australis was sporadically very abundant in surface waters of the outer shelf, as was Paracalanus spp. in bottom-water of the outer shelf. An assemblage of Coral Sea species of copepod occurred in bottom-water of the outer shelf during two major intrusions, but not at other times. Densities of all common species varied considerably between cruises. Maximum densities of all common species except A. australis tended to be associated with diatom blooms linked to intrusions but a bloom did not necessarily mean all common species were abundant. Fish larvae included both reef and non-reef taxa, with reef taxa predominating on the outer shelf (approx 2:1 in density of individuals) and non-reef taxa dominating in nearshore samples (approx 2:1). Nine of the ten most abundant taxa analysed showed highly significant variation in numbers among stations and all but one of these also exhibited significant station x cruise interactions. Interactions generally reflected changes in the rank importance of adjacent stations from one cruise to the next or lack of any significant cross-shelf variation on some cruises where overall abundance of the taxa was low.