Medical geology in tropical countries with special reference to Sri Lanka

Sri Lanka provides an ideal opportunity for the study of the effect of geology on human health. The vast majority of the people of Sri Lanka still live in rural areas within areas termed geochemical provinces. Very broadly, one could say that a geochemical province has characteristic chemical composition in soil, water stream sediments and rocks, enabling their delineation from others. The chemical composition is presumed to be have an impact on the health of the inhabitants of the particular geochemical province, particularly because of the fact that their food and water are obtained mostly from the terrain itself. This leads to the concept of “diseases of geochemical origin”. Among these are dental fluorosis, iodine deficiency disorders (IDDs) and selenium-based diseases. The Dry Zone of Sri Lanka has several areas rich in groundwater fluoride, the ingestion of which leads to dental fluorosis. Iodine deficiency diseases are more common in the Wet Zone, though their aetiologies are more complicated. Interestingly, it has also been observed that significant proportions of the female population of Sri Lanka are selenium-deficient, which could well be related to the geological environment. Chronic renal failure (CRF) has been observed in some areas of the Dry Zone of Sri Lanka, where there is a relationship of CRF with the mineral content of drinking water. This subject matter falls under the auspices of Medical Geology, a scientific discipline still in its infancy, and much more concerted studies are needed to attract the attention of medical research.     

Biochar-based constructed wetlands to treat reverse osmosis rejected concentrates in chronic kidney disease endemic areas in Sri Lanka

The objectives were to investigate the potential remedial measures for reverse osmosis (RO) rejected water through constructed wetlands (CWs) with low-cost materials in the media established in chronic kidney disease of unknown etiology (CKDu) prevalent area in Sri Lanka. A pilot-scale surface and subsurface water CWs were established at the Medawachchiya community-based RO water supply unit. Locally available soil, calicut tile and biochar were used in proportions of 81, 16.5 and 2.5% (w/w), respectively, as filter materials in the subsurface. Vetiver grass and Scirpus grossus were selected for subsurface wetland while water lettuce and water hyacinth were chosen for free water surface CWs. Results showed that the CKDu sensitive parameters; total dissolved solids, hardness, total alkalinity and fluoride were reduced considerably (20–85%) and most met desirable levels of stipulated ambient standards. Biochar seemed to play a major role in removing fluoride from the system which may be due to the existing and adsorbed K⁺, Ca⁺², Mg⁺², etc. on the biochar surface via chemisorption. The least reduction was observed for alkalinity. This study indicated potential purification of aforesaid ions in water which are considerably present in RO rejection. Therefore, the invented bio-geo constructed wetland can be considered as a sustainable, economical and effective option for reducing high concentrations of CKDu sensitive parameters in RO rejected water before discharging into the inland waters.     

Distribution of Floristic Richness and Its Conservation in Sri Lanka

Abstract: The angiosperm flora of Sri Lanka, which has been comparatively well studied by many eminent botanists for over two centuries, has a rich endemic component and also exhibits strong affinities to that of peninsular India Some of the 15 floristic regions recognized in the island have exceptionally rich, highly localized floras. But increased forest disturbances over the years have taken a heavy toll. A plea is made to conserve at least one sufficiently large forest reserve in each floristic region. A meaningful conservation program has been launched in the Sinharaja MAB Reserve; similar programs are urgently needed for other protected areas of the island.     

Pattern of distribution of selected trace elements in the marine brown alga,Sargassum filipendula Ag. from Sri Lanka

Baseline concentrations together with biological variations of 29 trace elements (Ag, As, Au, Ba, Br, Cd, Ce, Co, Cr, Cs, Eu, Fe, Hf, I, Mn, Mo, Ni, Pb, Rb, Sb, Sc, Se, Sm, Sr, Tb, Th, Yb, Zn and Zr) were investigated in the brown alga, Sargassum filipendula collected from the western coast of Sri Lanka. Several elements (Co, Cr, Fe, Hf, Ni, Sc, Se, Th, Zr and the rare earth elements) were found to be enriched in S. filipendula compared to NIES No. 9 Sargasso reference material. Concentration of strontium in S. filipendula was highest at all sites. Chemical abundance of the rare earth elements decreased approximately linearly with increasing atomic numbers. The pattern of elemental distribution appears to be due to the fact that S. filipendula seems capable of concentrating high levels of trace elements under conditions of their very low availability in sea water. Concentration factors for elements in S. filipendula lie in a higher range compared with those reported in the literaure for brown algae.     

Utilisation of mangroves and seagrasses by fishes in the Negombo Estuary,Sri Lanka

In two years of sampling, 10 287 fishes belonging to 62 species (39 families) were collected from mangroves and seagrasses of the Negombo Estuary. Of the species collected, 70% were marine, 27% estuarine and 3% freshwater. Aplocheilus melastigma, Ambassis dayi, Etroplus suratensis, E. maculatus, Bathygobius fuscus and Arothron immaculatus constituted 90% of the catch. Sixteen species were caught only from mangroves, 6 only from seagrasses, and 40 from both. The number of species, individuals, biomass and diversity were higher in seagrasses than in mangroves. Gobies and some siganids moved to the mangrove habitat as they grew, but cichlids, triacanthids, some eleotrids and tetraodontids preferred seagrasses. The number of species and individuals caught increased at the beginning of the north-east monsoon when the rainfall was low. The number of species and individual numbers were positively correlated with salinity and dissolved oxygen and negatively correlated with water temperature. Of the 33 species examined, seagrasses formed >25% of the gut content in juvenile Lates calcarifer, Apogon thermalis, E. suratensis, E. maculatus, Siganus javus, Butis butis and Bathygobius fuscus. Mangrove litter was the main gut content of the family Syngnathidae. E. suratensis, E. maculatus and S. javus from seagrasses contained more filamentous algae than seagrasses in their stomachs. S. javus collected from mangroves also contained more seagrasses in their stomachs than mangrove litter, indicating that the association of juvenile fishes with mangroves or seagrasses may not be obligate in estuaries subject to low tidal fluctuations.     

Chronic kidney diseases of uncertain etiology (CKDue) in Sri Lanka: geographic distribution and environmental implications

The increase in the number of chronic kidney disease (CKD) patients from the north central region of Sri Lanka has become a environmental health issue of national concern. Unlike in other countries where long-standing diabetes and hypertension are the leading causes of renal diseases, the majority of CKD patients from this part of Sri Lanka do not show any identifiable cause. As the disease is restricted to a remarkably specific geographical terrain, particularly in the north central dry zone of the country, multidisciplinary in-depth research studies are required to identify possible etiologies and risk factors. During this study, population screening in the prevalent region and outside the region, analysis of geoenvironmental and biochemical samples were carried out. Population screening that was carried out using a multistage sampling technique indicated that the point prevalence of CKD with uncertain etiology is about 2–3% among those above 18 years of age. Drinking water collected from high-prevalent and non-endemic regions was analyzed for their trace and ultratrace element contents, including the nephrotoxic heavy metals Cd and U using ICP-MS. The results indicate that the affected regions contain moderate to high levels of fluoride. The Cd contents in drinking water, rice from affected regions and urine from symptomatic and non-symptomatic patients were much lower indicating that Cd is not a contributing factor for CKD with uncertain etiology in Sri Lanka. Although no single geochemical parameter could be clearly and directly related to the CKD etiology on the basis of the elements determined during this study, it is very likely that the unique hydrogeochemistry of the drinking water is closely associated with the incidence of the disease.     

Geochemical and mineralogical characteristics of elephant geophagic soils in Udawalawe National Park,Sri Lanka

Geophagy or deliberate ingestion of soils was observed among Asian elephants (Elephas maximus) in the Udawalwe National Park, Sri Lanka, for several years. The geochemical and mineralogical composition of the clayey soil layers which are purposefully selected and eaten by elephants in the park were studied, in order to identify the possible reasons for elephant geophagy. The concentrations of major and trace elements were determined by means of X-ray fluorescence spectrometry in 21 soil samples from eight geophagic sites and six soil samples collected from four non-geophagic sites. The mineralogical composition of selected soil samples was investigated using X-ray diffractometry (XRD). These geochemical analyses revealed that geophagic soils in the study areas are deeply weathered and that most of the elements are leached from the soil layers under extreme weathering conditions. The XRD data showed that the soils of the area consisted mainly quartz, feldspar, and the clay minerals kaolinite, Fe-rich illite, and smectite. Although no significant geochemical differences were identified between geophagic and non-geophagic soils, a clear difference was observed in their clay mineralogical content. Soils eaten by elephants are richer in kaolinite and illite than non-geophagic soils, which contain a higher amount of smectite. It is suggested that elephants in Udawalawe National Park ingest soils mainly not to supplement the mineral contents of their forage but to detoxify unpalatable compounds in their diet.     

Impact of rubble mound groyne structural interventions in restoration of Koggala lagoon,Sri Lanka; numerical modelling approach

Physical processes of the lagoon are influenced by structural interventions. Understanding the complex reality of physical processes sometimes difficult with field observations thus a model provides a simplified abstract view. Two dimensional hydrodynamic model is used to describe, restoration efforts to Koggala lagoon, a combined freshwater and estuarine complex of rich ecosystem on the southern coast of Sri Lanka. The lagoon mouth was naturally closed by a sand bar which controlled the seawater intrusion. Due to large-scale sand removal at lagoon mouth, formation of the sandbar shifted towards the lagoon. After the removal of natural sand barrier, rubble mound groyne structures were built to avoid sand deposition in the lagoon and to protect the highway bridge from the sea wave attack. Construction of the groyne resulted in the lagoon mouth being permanently open which in turn led to many environmental problems with saline intrusion. The aim of this study is to evaluate the current situation of the lagoon and propose alternative structural interventions for minimization of seawater intrusion and subsequently improve lagoon ecosystem. Hydrological parameters were investigated and mathematical models for hydrodynamic behavior of the lagoon were applied in order to describe the lagoon physical processes and flow characteristics. Existing rubble mound structures were redesigned in order to minimize the seawater intrusion. Numerical simulations were carried out for two different mouth widths (40 m and 20 m) with appropriate structural interventions. Existing salting factor for the lagoon is 0.68 and numerical simulation results showed salting factor for 40 m and 20 m openings are 0.61 and 0.54 respectively. This shows the mouth width can be reduced up to 20 m in order to obtain a slating factor close to 0.5, which indicates the predominant influence of fresh water which in turn leads lagoon to a fresh water ecosystem.     

Floristic composition of sandy shore vegetation at Uswetakeiya in Sri Lanka

This study was conducted at Uswetakeiyawa on the southwestern part of Sri Lanka. Twenty-two families, 42 genera and 52 species were recorded from the sandy shore vegetation. Approximately 3.8 % (2 species) were found to be endemic and 67.3 % (35 species) were found to be of medicinal importance. Ipomea pes-capre and Spinifex littoreus were the most abundant species at the study site. The average value for all the zone combinations was β = 0.693, and the highest similarity value was ISj = 0.276, corresponding to two non-contiguous zones. The results show that a variation in plant diversity is to be found across the gradient. The typical zoning nature of the sandy shore vegetation has been disturbed due to on-going development in Uswetakeiyawa. New policy decisions should be taken to restrict development activities in Uswetakeiyawa in order to protect the sandy shore vegetation.     

Foraging habitat and echolocation behaviour of Schneider's leafnosed bat, Hipposideros speoris, in a vegetation mosaic in Sri Lanka

The Hipposideridae and Rhinolophidae are closely related families of bats that have similar echolocation (long-duration pure-tone signal, high duty cycle) and auditory systems (Doppler-shift compensation, auditory fovea). Rhinolophid bats are known to forage in highly cluttered areas where they capture fluttering insects, whereas the foraging habitat of hipposiderid bats is not well understood. Compared to rhinolophids, hipposiderid calls are shorter in duration, have lower duty cycles, and they exhibit only partial Doppler-shift compensation. These differences suggest that the foraging habitat of the two families may also differ. We tested this hypothesis by studying foraging and echolocation of Hipposideros speoris at a site with a range of vegetation types. Bats foraged only while in flight and used all available closed and edge habitats, including areas adjacent to open space. Levels of clutter were high in forest and moderate in other foraging areas. Prey capture (n=42) occurred in edge vegetation where it bordered open space. Echolocation signals of H. speoris lacked an initial upward frequency-modulated sweep and were of moderate duration (5.1-8.7 ms). Sequences had high duty cycles (23-41%) and very high pulse repetition rates (22.8-60.6 Hz). Variation in signal parameters during search phase flight across foraging habitats was low. H. speoris showed a greater flexibility in its use of foraging habitat than is known for any rhinolophid species. Our study confirmed that there are differences in habitat use between hipposiderid and rhinolophid bats and we suggest that this divergence is a consequence of differences in their echolocation and auditory systems.     

Foraging behaviour and echolocation in the rufous horseshoe bat (Rhinolophus rouxi) of Sri Lanka

Summary In October 1984 foraging areas and foraging behaviour of the rufous horseshoe bat, Rhinolophus rouxi, were studied around a nursery colony on the hill slopes of Sri Lanka. The bats only foraged in dense forest and were not found in open woodlands (Fig. 1). This strongly supports the hypothesis that detection of fluttering prey is by pure tone echolocation within or close to echo-cluttering foliage. During a first activity period after sunset for about 30–60 min, the bats mainly caught insects on the wing. This was followed by a period of inactivity for another 60–120 min. Thereafter the bats resumed foraging throughout the night. They mainly alighted on specific twigs and foraged in flycatcher style. Individual bats maintained individual foraging areas of about 20x20 m. They stayed in this area throughout the night and returned to the same area on subsequent nights. Within this area the bats generally alighted on twigs at the same spots. Foraging areas were not defended against intruders. The bats echolocated throughout the night at an average repetition rate of 9.6±1.4 sounds/s. While hanging on twigs they scanned the surrounding area for flying prey by turning their bodies continuously around their legs. On average they performed one brief catching flight every 2 min and immediately returned to one of their favourite vantage points. Echolocation sounds may consist of up to three parts, a brief initial frequency-modulated (FM) component, a long constant frequency (CF) part lasting for about 40–50 ms, and a final FM part again (Fig. 4b, c). Adult males and females emitted pure tone frequencies in separate bands, the males from 73.5–77 kHz and the females from 76.5–79 kHz (Fig. 5). During scanning for prey from vantage points, the bats mostly emitted pure tones without any FM component (Fig. 4a). The last few pure tones emitted before take-off were prolonged to about 60 ms duration. The final FM part was therefore not an obligatory component of the echolocation signals in horseshoe bats. During flight and especially during emergence from the cave, most sounds consisted of a pure tone and loud initial and final FM sweeps. We therefore suggest that the initial FM part might also be relevant for echolocation. From our observations we conclude that the FM components are especially important during obstacle avoidance. In most sounds emitted in the field a fainter first harmonic was present. It was usually up to 30 dB fainter than the second harmonic, but in some instances it was as loud or even distinctly louder than the second one (Fig. 6a). Even within one sound the intensity relationship between the two harmonics may be reversed. We therefore suggest that the first harmonic is an integral part of the signal and relevant for information analysis in echolocation.     

A sustainable extension package for rural and urban communities: An undertaking in western Sri Lanka

The biggest challenge of agricultural extension in urban communities is how to reach the appropriate target group, because the majority of people are engaged in agricultural production as well as homestead development in a part-time or restricted-time basis, and have different interests. Therefore, an agricultural extension research package, initiated in late 1990, is being tested, with special reference to the horticultural interests of the population in the Western Province. It has three modules: first, dealing with rehabilitation of already existing fruit trees (rambutan, mango) for long-term economic benefits; second, strengthening the income-generating activities at the homestead level, namely leafy vegetable cultivation, value-added products from fruits and vegetables, cultivation of vegetables in pots and hanging baskets, in situ budding, and post-harvest management techniques in fruits, vegetables and flowers; third, the improvement of soil fertility and waste management—particularly soil conservation, compost making, and landscaping techniques. The package integrates traditional and modern extension methods, and at present is still undergoing the implementation process (currently 15% complete). Moreover, it includes a mechanism enabling the mixing of indigenous knowledge and exogenous knowledge by viewing the target group as the subject of the extension process.     

广西特有植物瑶山苣苔的濒危原因及保护对策

瑶山苣苔(Dayaoshania cotinifolia W.T.Wang)是苦苣苔科多年生草本植物,为国家Ⅰ级重点保护野生植物.在2004-2006年对瑶山苣苔资源现状、生物学和生态学特性调查的基础上,探讨了瑶山苣苔的濒危原因及解濒措施.结果表明,人为原因是导致瑶山苣苔濒危的最主要原因;其次是昆虫对瑶山苣果实的捕食显著减少了种子数量;第三,瑶山苣苔同有的生物学特性限制其种群数量增加.为更好的保护瑶山苣苔,作者建议采用就地保护策略,即建立金秀老山自然保护区独木桥和青年工区两个瑶山苣苔保护点,有效地保护该种群及其分布生境;同时加强瑶山苣苔的科学研究,实施迁地保护.     

The Effects of Selective Logging on Inbreeding in Shorea megistophylla (Dipterocarpaceae) from Sri Lanka

The mating system of Shorea megistophylla , an endemic canopy tree from Sri Lanka, was quantified by allozyme analysis of progeny arrays using a mixed-mating model. Two adjacent populations were compared: one in forest that was selectively logged about 20 years ago, and the other in undisturbed primary forest. The selectively logged population had a lower multilocus outcrossing rate (t_m, = 0.71) compared to that of the undisturbed forest (t_m = 0.87). Only the progeny from the logged population showed evidence of either biparental inbreeding or Wablund effect, and the genotypic frequencies violated the assumptions of the mixed-mating model. Apomixis was detected in one isolated tree in the Royal Botanical Garden in Peradeniya by a multilocus test of progeny genotypic frequencies relative to the maternal genotype. However, significant levels of apomixis were not discerned in the natural (logged and unlogged) populations. These findings indicate that a reduction in population density of S. megistophylla following selective logging can significantly elevate the proportion of seeds produced through inbreeding. Adventive embryony may also increase in isolated trees that lack the chance to outcross.     

中国特有植物猪血木的濒危原因及保护对策

猪血木(Euryodendron excelsum H.T.Chang)为中国特有的山茶科单型属猪血木属的珍稀濒危植物,现仅分布于广东省阳春县八甲镇地区,且仅残存一个居群,居群内个体数量仅100余株,该物种已被列为国家二级保护植物。物种濒危原因分析是生物多样性保护的关键环节,文章从猪血木的地理分布、生活史特性、种群分布现状及生态环境因素影响等方面分析了该物种的濒危现状,猪血木种群地理分布的局限性限制了其空间拓展;种子萌发和幼苗生长对生境要求特殊和种群现状不利于其更新和发展,人为干扰对猪血木影响严重。其濒危的主要原因是人为因素引起的生境破碎化和过度砍伐所导致的个体数量下降,文章认为现存种群和生境的保护是濒危物种保护的最有效手段,针对猪血木的濒危现状和原因,提出了就地保护,促进自然种群的繁衍更新,建立猪血木繁育基地进行迁地保护和回归引种的保护策略,以期为猪血木的保护和种群恢复提供科学的理论指导,也为中国珍稀濒危物种和生物多样性的保护提供基础资料。     

Soil amendments and cultivar selection can improve rice yield in salt-influenced (tsunami-affected) paddy fields in Sri Lanka

The tsunami disaster in the Indian Ocean in December 2004 caused devastation of agricultural soils by salt water over wide areas. Many rice fields located close to the coast were affected by the flood of seawater. Electric conductivity (EC) of soils in tsunami-affected rice fields was found to be higher compared to unaffected fields 2 years after the tsunami. Four soil amendments (gypsum, dolomite, cinnamon ash and rice-husk-charcoal) were tested for their influence on improving the yield parameters of rice grown in a tsunami-affected and a non-affected area. Yield parameters were compared with an untreated control of the same cultivar (AT362) and with a salt resistant rice variety (AT354). The salt resistant variety had the highest grain yield. The two amendments gypsum and rice-husk-charcoal led to an increase in grain yield compared to the untreated control, whereas dolomite and cinnamon ash had no significant effect on grain yield.     

Chronic kidney disease of unknown aetiology in Sri Lanka and the exposure to environmental chemicals: a review of literature

Chronic kidney disease of unknown aetiology (CKDu) has emerged as a serious health issue in Sri Lanka. The disease has been recorded in the North Central Province of the country. While studies have elicited many hypotheses concerning the pathogenicity of CKDu, none adequately explains the cause of CKDu and the measures needed to minimise its occurrence. Nephrotoxic heavy metal (oid)s such as cadmium, arsenic, lead, and chromium are present in biological samples of people from endemic areas. This review appraises evidence on the effects of long-term exposure to low concentration of nephrotoxic heavy metals, which could be the principal cause of CKDu. Although a considerable variation exists in metal concentrations in patients’ blood and urine, higher levels of heavy metals were consistently observed in affected areas. This review finds that the populations in the endemic areas are exposed to heavy metal (oid)s at low concentrations, which are considered as safe levels; nevertheless, it influences the incidence of CKDu. Recent global studies on chronic kidney disease (CKD) revealed a low concentration of heavy metals in diseased patients. Research findings indicated that CKDu patients in Sri Lanka demonstrated similar blood levels of Cd, Pb, and higher concentrations of Cr than that have been reported globally. Further studies on the influence of combinations of nephrotoxic heavy metals at low concentrations on reduced glomerular filtration rate and other renal biomarkers could explain CKDu pathogenicity.

     

Background levels of heavy metals in plants of different taxonomic groups from a montane rain forest in Sri Lanka

An undisturbed natural reserve area iocated in a tropical montane rain forest at about 1800 m altitude in Sri Lanka served as a study site to investigate and assess the natural background concentration levels of As, Cd, Co, Cu, Ni, Pb and Zn in plants representing different taxonomic groups (divisions) in the plant kingdom. The plants selected were: the lichen,Usnea barbata (old man's beard);Pogonatum sp. (a moss);Lycopodium selago (epiphytic lycopod);Polypodium lanceolatum (epiphytic fern);Bulbophyllum elliae (epiphytic orchid) andActinodaphne ambigua (dicotyledonous large tree). Degree of homogeneity with respect to Cd, Cu, Pb and Zn in homogenised materials of all samples were within acceptable limits, whereasPogonatum sp. showed the highest degree of homogeneity for Pb. In addition to confirming extremely low levels of heavy metals in all plant species, the survey also found that generally the primitive plants,Usnea andPogonatum appear to have a greater tendency to accumulate As, Cd, Co and Pb; in particular,U. barbata appears to be an efficient accumulator for those heavy metals, suggesting its potential use in environmental studies.Actinodaphne ambigua was found to have a specific accumulating ability for nickel. Surface cleaning of theA. ambigua leaves resulted in a substantial decrease in the foliar contents of Cd, Ni, Pb and Zn. Variations in heavy metal contents observed in different plant genera are discussed in terms of their habits and place of growth in the forest. It is anticipated that the background levels presented in this paper from a remote, unpolluted tropical ecosystem will provide useful reference data for comparative environmental studies.     

Rise of toxic cyanobacterial blooms in temperate freshwater lakes: causes,correlations and possible countermeasures

The progressive degradation of surface freshwater quality due to the mass proliferation of toxic cyanobacterial blooms is of growing global concern. The occurrence of cyanobacterial blooms is not a new phenomenon. However, a global increase in the frequency, duration, and distribution of toxic cyanobacterial blooms could be observed in the past decades. Evidence suggests that this trend might be attributed to a complex interplay of direct and indirect anthropogenic influences. The underlying causes and interrelations for this development have not been fully clarified. Nonetheless, all evidence points to the fact that mitigation of toxic cyanobacterial blooms will be a key challenge of the twenty-first century. This review addresses the underlying causes for the increased incidence of toxic cyanobacteria in temperate freshwater lakes and attempts to reveal possible reciprocities between bloom promoting factors. Selected approaches for the prevention of toxic cyanobacterial blooms as well as the mitigation of their potential negative impacts on humans will be presented.