Characterization and speciation of mercury in mosses and lichens from the high-altitude Tibetan Plateau

The accumulation and species of mercury (Hg) in mosses and lichens collected from high-altitude Tibetan Plateau were studied. The altitudes of the sampling sites spanned from 1983 to 5147 m, and a total of 130 mosses and 52 lichens were analyzed. The total mercury (THg) contents in mosses and lichens were in the ranges of 13.1–273.0 and 20.2–345.9 ng/g, respectively. The average ratios of methylmercury (MeHg) in THg in mosses and lichens were 2.4 % (0.3–11.1 %) and 2.7 % (0.4–9.6 %), respectively, which were higher than those values reported in other regions. The contents of THg in both mosses and lichens were not correlated with the THg in soils (p > 0.05). The lipid contents displayed a significantly positive correlation with concentrations of MeHg in mosses (r = 0.461, p < 0.01, n = 90), but not in lichens. The correlations between Hg contents in mosses and the altitudes, latitudes and longitudes of sampling sites indicated the mountain trapping and spatial deposition of Hg in the Tibetan Plateau.     

Physiological adaptations of the invasive cordgrass<Emphasis Type="Italic"> Spartina anglica</Emphasis> to reducing sediments: rhizome metabolic gas fluxes and enhanced O<Subscript>2</Subscript> and H<Subscript>2</Subscript>S transport

Cordgrasses of the genus Spartina form dense monospecific stands worldwide, profoundly influencing the ecology of estuaries. One species, Spartina anglica, originated by allopolyploidy in the 1800s and has been particularly prolific as an invasive species worldwide. S. anglica tolerates low-lying estuarine mudflats that its progenitor species and other coastal halophytes cannot. However, very little is known of the physiology of S. anglica. In the present study, an automated flow-through respirometry system was used to quantify metabolic gas fluxes (O₂, H₂S, CO₂, and NH₃) of S. anglica rhizomes. Enhanced physiological mechanisms to transport O₂ and H₂S in both directions between the rhizosphere and the atmosphere were exhibited by S. anglica, but not by the native North American species S. alterniflora. These results suggest that tolerance of anoxia and H₂S may assist S. anglica in colonizing extensively flooded environments. Enhanced sediment oxygenation by S. anglica may be potentially useful for phytoremediation of contaminated sediments, since microbial degradation of organic pollutants is often limited by O₂ availability.     

Arsenic,antimony, and other trace element contamination in a mine tailings affected area and uptake by tolerant plant species

The study was conducted to characterize mineralogical and elemental composition of mine tailings in order to evaluate the environmental hazards, and identify the metal accumulation potential of native plant species from São Domingos mine, one of the long-term activity mines of the Iberian Pyrite Belt dating back to pre-Roman times. The mine tailings including soils and different plant species from São Domingos were analyzed for determination of tailings characteristics and chemical element contents in tailings and plants. The large amounts of mining wastes are causing significant adverse environment impacts due to acid mine drainage production and mobilization of potentially toxic metals and metalloids in residential areas, agricultural fields, downstreams, and rivers. The typical mineralogical composition is as follows: quartz, micas, K-feldspar, olivine-group minerals, magnetite, goethite, hematite, jarosite, and sulfides. The mine tailings were highly contaminated by As, Ag, Cr, Hg, Sn, Sb, Fe, and Zn; and among them, As and Sb, main contaminants, attained the highest concentrations except Fe. Arsenic has exhibited very good correlations with Au, Fe, Sb, Se, and W; and Sb with As, Au, Fe, Se, Sn, and W in tailings. Among the all plant species, the higher concentrations of all the metals were noted in Erica andevalensis, Erica australis, Echium plantagium, and Lavandula luisierra. Considering the tolerant behavior and abundant growth, the plant species Erica australis, Erica andevalensis, Lavandula luisierra, Daphne gnidium, Rumex induratus, Ulex eriocladus, Juncus, and Genista hirsutus are of major importance for the rehabilitation and recovery of degraded São Domingos mining area.     

Effects of population-related variation in plant primary and secondary metabolites on aboveground and belowground multitrophic interactions

Insects feeding on aboveground and belowground tissues can influence each other through their shared plant and this is often mediated by changes in plant chemistry. We examined the effects of belowground root fly (Delia radicum) herbivory on the performance of an aboveground herbivore (Plutella xylostella) and its endoparasitoid wasp (Cotesia vestalis). Insects were reared on three populations of wild cabbage (Brassica oleracea) plants, exhibiting qualitative and quantitative differences in root and shoot defense chemistry, that had or had not been exposed to root herbivory. In addition, we measured primary (amino acids and sugars) and secondary [glucosinolate (GS)] chemistry in plants exposed to the various plant population-treatment combinations to determine to what extent plant chemistry could explain variation in insect performance variables using multivariate statistics. In general, insect performance was more strongly affected by plant population than by herbivory in the opposite compartment, suggesting that population-related differences in plant quality are larger than those induced by herbivory. Sugar profiles were similar in the three populations and concentrations only changed in damaged tissues. In addition to population-related differences, amino acid concentrations primarily changed locally in response to herbivory. Whether GS concentrations changed in response to herbivory (indole GS) or whether there were only population-related differences (aliphatic GS) depended on GS class. Poor correlations between performance and chemical attributes made biological interpretation of these results difficult. Moreover, trade-offs between life history traits suggest that factors other than food nutritional quality contribute to the expression of life history traits.     

Assessment of pollution of potentially harmful elements in soils surrounding a municipal solid waste incinerator,China

We assessed the contamination levels of Mn, Zn, Cr, Cu, Ni, Pb, As and Hg and the risks posed by these potentially harmful elements in top-soils around a municipal solid waste incinerator (MSWI).We collected 20 soil samples, with an average pH of 8.1, and another fly ash sample emitted from the MSWI to investigate the concentrations of these elements in soils. We determined the concentrations of these elements by inductively coupled plasma–optical emission spectrometer (ICP-OES), except for Hg, which we measured by AF-610B atomic fluorescence spectrometer (AFS). We assessed the risks of these elements through the use of geoaccumulation index (I _geo), potential ecological risk index (RI), hazard quotient (HQ _i ) and cancer risk (Risk _i ). The results showed that concentrations of potentially harmful elements in soil were influenced by the wind direction, and the concentrations of most elements were higher in the area northwest of the MSWI, compared with the area southeast of the incinerator, with the exception of As; these results were in accordance with those results acquired from our contour maps. According to the I _geo values, some soil samples were clearly polluted by Hg emissions. However, the health risk assessment indicated that the concentrations of Hg and other elements in soil did not pose non-carcinogenic risks to the local populations. This was also the case for the carcinogenic risks posed by As, Cr, and Ni. The carcinogenic risk posed by As was higher, in the range 6.49 × 10^–6–9.58 × 10^–6, but this was still considered to be an acceptable level of risk.

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Observation of bioturbation and hyporheic flux in streambeds

In the Elkhorn River, burrows, tubes, and sediment mounds created by invertebrate bioturbation were observed in the exposed streambed and commonly concentrated on the fine-sediment patches, which consist of silt, clay, and organic matter. These invertebrate activities could loosen the thin layer of clogging sediments and result in an increase of pore size in the sediments, leading to greater vertical hydraulic conductivity of the streambed (K _v ). The measurements of the vertical hydraulic gradient across the submerged streambed show that vertical flux in the hyporheic zone can alter directions (upward versus downward) for two locations only a few meters apart. In situ permeameter tests show that streambed K _v in the upper sediment layer is much higher than that in the lower sediment layer, and the calculated K _v in the submerged streambed is consistently greater than that in the clogged sediments around the shorelines of the sand bars. Moreover, a phenomenon of gas bubble release at the water-sediment interface from the subsurface sediments was observed in the groundwater seepage zone where flow velocity is extremely small. The bursting of gas bubbles can potentially break the thin clogging layer of sediments and enhance the vertical hydraulic conductivity of the streambed.     

Importance of background values in assessing the impact of heavy metals in river ecosystems: case study of Tisza River,Serbia

The main objective of this paper is to evaluate how a choice of different background values may affect assessing the anthropogenic heavy metal pollution in sediments from Tisza River (Serbia). The second objective of this paper is to underline significance of using geochemical background values when establishing quality criteria for sediment. Enrichment factor (EF), geoaccumulation index (I _geo), pollution load index (PLI), and potential ecological risk index (PERI) were calculated using different background values. Three geochemical (average metal concentrations in continental crust, average metal concentrations in shale, and average metal concentrations in non-contaminated core sediment samples) and two statistical methods (delineation method and principal component analyses) were used for calculating background values. It can be concluded that obtained information of pollution status can be more dependent on the use of background values than the index/factor chosen. The best option to assess the potential river sediment contamination is to compare obtained concentrations of analyzed elements with concentrations of mineralogically and texturally comparable, uncontaminated core sediment samples. Geochemical background values should be taken into account when establishing quality criteria for soils, sediments, and waters. Due to complexity of the local lithology, it is recommended that environmental monitoring and assessment include selection of an appropriate background values to gain understanding of the geochemistry and potential source of pollution in a given environment.     

The greater roles of indigenous microorganisms in removing nitrobenzene from sediment compared with the exogenous <Emphasis Type="Italic">Phragmites australis</Emphasis> and strain JS45

The feasibility of using Phragmites australis-JS45 system in removing nitrobenzene from sediments was conducted. However, it was observed that nitrobenzene degraded rapidly and was removed completely within 20 days in native sediments, raising the possibility that indigenous microorganisms may play important roles in nitrobenzene degradation. Consequently, this study aimed to verify this possibility and investigate the potential nitrobenzene degraders among indigenous microorganisms in sediments. The abundance of inoculated strain JS45 and indigenous bacteria in sediments was quantified using real-time polymerase chain reaction. Furthermore, community structure of the indigenous bacteria was analyzed through high throughput sequencing based on Illumina MiSeq platform. The results showed that indigenous bacteria in native sediments were abundant, approximately 10¹⁴ CFU/g dry weight, which is about six orders of magnitude higher than that in fertile soils. In addition, the levels of indigenous Proteobacteria (Acinetobacter, Comamonadaceae_ uncultured, Pseudomonas, and Thauera) and Firmicutes (Clostridium, Sporacetigenium, Fusibacter, Youngiibacter, and Trichococcus) increased significantly during nitrobenzene removal. Their quantities sharply decreased after nitrobenzene was removed completely, except for Pseudomonas and Thauera. Based on the results, it can be concluded that indigenous microorganisms including Proteobacteria and Firmicutes can have great potential for removing nitrobenzene from sediments. Although P. australis - JS45 system was set up in an attempt to eliminate nitrobenzene from sediments, and the system did not meet the expectation. The findings still provide valuable information on enhancing nitrobenzene removal by optimizing the sediment conditions for better growth of indigenous Proteobacteria and Firmicutes.

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Bioaccumulation of essential metals (Co,Mn and Zn) in the king scallop <Emphasis Type="Italic">Pecten maximus</Emphasis>: seawater,food and sediment exposures

In order to understand the bioaccumulation of essential metals in filter-feeding mollusks living in soft sediments, the uptake and depuration kinetics of three elements (Co, Mn and Zn) were investigated in the king scallop Pecten maximus exposed via seawater, food, or sediment, using radiotracer techniques. The scallops were collected in April 2005 in the Pertuis Breton, France and acclimated to laboratory conditions for 8 weeks prior to the experimental exposures. Dissolved metals were efficiently bioconcentrated with mean concentration factors (CFs) ranging from 65 (Co) to 94 (Mn) after 7 days of exposure. Feeding experiments using microalgae Skeletonema costatum (diatom) or Isochrysis galbana (flagellate) showed that metal assimilation efficiency (AE) and retention (T _b½) were strongly influenced by food source. For Co, AE was higher when ingested with I. galbana (29 vs. 4%), whereas Mn and Zn AE was higher for S. costatum (82 vs. 44% and 86 vs. 68%, respectively). Transfer factors (TFs) in P. maximus exposed to radiolabelled sediment were 3–4 orders of magnitude lower than CFs. Nevertheless, the fraction of sediment-bound metals that was taken up was efficiently absorbed in scallop tissues (>85%). Whatever the exposure pathway, metals were strongly retained in the kidneys of P. maximus. Due to poor determination of Mn biokinetics (and related parameters) in scallops exposed through sediment, the relative contribution of the three different pathways could be determined only for Co and Zn using a biodynamic model. The particulate pathway (i.e. food or sediment) appeared to be the main route for bioaccumulation of both metals in this scallop. In addition, even though P. maximus displayed different AEs for Co and Zn according to the food, results of the model were only slightly affected, if any, by change in the dietary parameters (AE and depuration rate constant, k _e).     

Blood concentrations of lead,cadmium, mercury and their association with biomarkers of DNA oxidative damage in preschool children living in an e-waste recycling area

Reactive oxygen species (ROS)-induced DNA damage occurs in heavy metal exposure, but the simultaneous effect on DNA repair is unknown. We investigated the influence of co-exposure of lead (Pb), cadmium (Cd), and mercury (Hg) on 8-hydroxydeoxyguanosine (8-OHdG) and human repair enzyme 8-oxoguanine DNA glycosylase (hOGG1) mRNA levels in exposed children to evaluate the imbalance of DNA damage and repair. Children within the age range of 3–6 years from a primitive electronic waste (e-waste) recycling town were chosen as participants to represent a heavy metal-exposed population. 8-OHdG in the children’s urine was assessed for heavy metal-induced oxidative effects, and the hOGG1 mRNA level in their blood represented the DNA repair ability of the children. Among the children surveyed, 88.14% (104/118) had a blood Pb level >5 μg/dL, 22.03% (26/118) had a blood Cd level >1 μg/dL, and 62.11% (59/95) had a blood Hg level >10 μg/dL. Having an e-waste workshop near the house was a risk factor contributing to high blood Pb (r _s  = 0.273, p < 0.01), while Cd and Hg exposure could have come from other contaminant sources. Preschool children of fathers who had a college or university education had significantly lower 8-OHdG levels (median 242.76 ng/g creatinine, range 154.62–407.79 ng/g creatinine) than did children of fathers who had less education (p = 0.035). However, we did not observe a significant difference in the mRNA expression levels of hOGG1 between the different variables. Compared with children having low lead exposure (quartile 1), the children with high Pb exposure (quartiles 2, 3, and 4) had significantly higher 8-OHdG levels (β _Q2 = 0.362, 95% CI 0.111–0.542; β _Q3 = 0.347, 95% CI 0.103–0.531; β _Q4 = 0.314, 95% CI 0.087–0.557). Associations between blood Hg levels and 8-OHdG were less apparent. Compared with low levels of blood Hg (quartile 1), elevated blood Hg levels (quartile 2) were associated with higher 8-OHdG levels (β _Q2 = 0.236, 95% CI 0.039–0.406). Compared with children having low lead exposure (quartile 1), the children with high Pb exposure (quartiles 2, 3, and 4) had significantly higher 8-OHdG levels.     

Phytotoxicity in seven higher plant species exposed to di-<Emphasis Type="Italic">n</Emphasis>-butyl phthalate or bis (2-ethylhexyl) phthalate

We investigated phytotoxicity in seven plant species exposed to a range of concentrations (0–500 mg·kg^?1 soil) of di-n-butyl phthalate (DnBP) or bis (2-ethylhexyl) phthalate (DEHP), two representative phthalate esters (PAEs) nominated by USEPA as priority pollutants and known environmental estrogens. We studied seed germination, root elongation, seedling growth, biomass (fresh weight, FW) and malondialdehyde (MDA) content of shoots and roots of wheat (Triticum aestivum L.), alfalfa (Medicago sativa L.), perennial ryegrass (Lolium perenne), radish (Raphanus sativus L.), cucumber (Cucumis sativus L.), oat (Avena sativa) and onion (Allium cepa L.), together with monitoring of plant pigment content (chlorophyll a, b and carotinoids) in alfalfa, radish and onion shoots. Root elongation, seedling growth and biomass of the test species were generally inhibited by DnBP but not by DEHP, indicating a lower level of phytotoxicity of DEHP than of DnBP. MDA contents of four species were promoted by PAE exposure, but not in alfalfa, ryegrass or onion shoots, indicating lower sensitivity of these three species to PAE pollutants. Plant pigment contents were clearly affected under the stress of both pollutants, implying the potential damage to the photosynthetic system of test plants, mainly by decreasing the content of chlorophyll a and b. Results of DnBP and DEHP phytotoxicity to the primary growth of test plants has provided information for the assessment of their environmental risk in the soil and also forms a basis for the further analysis of their toxic effects over the whole growth period of different plant species.     

Multiple biomarker responses in caged benthic gastropods <Emphasis Type="Italic">Bellamya aeruginosa</Emphasis> after in situ exposure to Taihu Lake in China

Background

Freshwater sediments have been recognized as a long-term sink and potential source for environmental pollutants released into the aquatic ecosystems. In this study, the sediment quality of Taihu Lake, which is susceptible to anthropogenic contamination, was assessed by a combination of chemical analytical and biological end points. Specifically, the snail Bellamya aeruginosa was caged in situ at two locations representing different pollution levels for different exposure times (7, 14 and 21 days). At each of these time points, biochemical parameters, i.e., phase I biotransformation enzymes ethoxyresorufin-O-deethylase (EROD), the antioxidant enzymes superoxide dismutase and catalase, reactive oxygen species, protein carbonyl content and lipid peroxidation, were evaluated in the hepatopancreas of snails. In addition, surface sediments were collected for analysis of contaminants of concern, including inorganic pollutants, organochlorine pesticides, polychlorinated biphenyls and polybrominated diphenyl ethers.

Results

Chemical analyses revealed that sediments from Taihu Lake were contaminated with trace elements and organic pollutants. Concentrations of trace elements (Cu, Ni and As) and organochlorinated pesticides (4,4′-DDE) exceeded their corresponding threshold effect level according to the sediment quality assessment values for freshwater ecosystems in Canada, indicating that adverse biological effects may occur. All biomarkers, except EROD activity, were induced in snails during all exposure times. The integrated biomarker response index (IBR) indicated that during the initial exposure phase (7 days), B. aeruginosa were subjected to significant environmental stress, which diminished during later sampling time points.

Conclusions

Results showed that IBR correlated well with the levels of environmental contaminants, demonstrating the applicability of this biomonitoring approach to complex environmental exposure scenarios.

     

HCHs and DDTs in Yellow River of Henan section—a typical agricultural area in China: levels,distributions and risks

The levels, potential sources and ecological risks of hexachlorocyclohexanes (HCHs) and dichlorodiphenyltrichloroethanes (DDTs) in Yellow River of Henan section, a typical agricultural area in China, were investigated. Surface water samples and suspended particulate matters (SPMs) were collected from 23 sites during two seasons. In wet season, the residues of ∑HCHs (α-HCH, β-HCH, γ-HCH and δ-HCH) and ∑DDTs (p,p′-DDT, o,p′-DDT, p,p′-DDE, p,p′-DDD) ranged from 41.7 to 290 and 4.42 to 269 ng/L in surface water, while those varied from 0.86 to 157 and 1.79 to 96.1 ng/g dw in SPM, respectively. Moreover, in surface water, the levels of HCHs and DDTs in wet season were much higher than those in dry season. The reverse was true for residues of HCHs and DDTs in SPM. Compared with the large rivers in other regions, the levels of HCHs and DDTs in the studied area ranked at high levels and the residual concentrations might cause adverse biological risk, especially for ∑HCHs during wet season. Distributions of HCHs and DDTs delineated that the input of tributaries made a significant effect on the residue of HCHs and DDTs in the mainstream. ∑HCHs in surface water were consist of 26.7 % α-HCH, 30.0 % β-HCH, 37.9 % γ-HCH and 5.45 % δ-HCH and those in SPM contained 5.16 % α-HCH, 22.1 % β-HCH, 60.5 % γ-HCH and 12.2 % δ-HCH on average. Combined with ratios of α-HCH/γ-HCH in surface water (0.70) and in SPM (0.09), the results strongly indicated that lindane was recently used or discharged in the studied area. The mean percentage of DDTs′ isomers were 28.7 % p,p′-DDT, 29.8 % o,p′-DDT, 28.1 % p,p′-DDE and 13.4 % p,p′-DDD in surface water, while those were 12.5 % p,p′-DDT, 31.8 % o,p′-DDT, 30.5 % p,p′-DDE and 25.1 % p,p′-DDD in SPM. The ratios of (DDE + DDD)/∑DDTs and o,p′-DDT/p,p′-DDT revealed that the DDTs in the studied area mainly derived from long-term weathering of technical DDTs residue and the input of dicofol.     

Diffusional mass transfer coefficient at the water–sediment interface for wind-induced flow in very shallow lagoons

Very shallow lagoons that are a few centimeters deep are common in the arid Andes of Northern Chile, Argentina, Bolivia and Perú. The dynamics of these lagoons are dominated by the water–sediment interface (WSI) and strong afternoon winds. Although many studies have examined the diffusional mass transfer coefficients (k _t ) of open channel flows, estimates for wind-induced flows are still unknown. The aim of this article is to propose and validate an analytical expression for computing k _t at the WSI for wind-induced flow. The laboratory measurements were conducted in a wind tunnel with a water tank of variable depth located at its downwind end. Natural muddy sediments were placed in the middle of the tank so that the dissolved oxygen (DO) was consumed in the sediments. The diffusional mass transfer coefficient that characterizes the DO uptake in the sediment was obtained from DO micro-profiles measured with an OX-25 Unisense microelectrode. Water velocity profiles were measured with a 2D side-view Sontek acoustic doppler velocimetry (ADV), and the wind shear velocity was computed based on wind velocity profiles that were measured with an Extech hot-wire anemometer. A total of 16 experiments were conducted with different water depths and wind shear stresses. The constants required by the model were determined from these experiments, and the analytical expression was successfully validated by the laboratory observations. The analytical expression obtained for computing k _t was also validated with field observations that were conducted in October, 2012, in Salar del Huasco, Northern Chile (20.274° S, 68.883° W, 3800 m above sea level). The comparison between the observed and predicted values of k _t provides a determination coefficient of r ² = 0.48 and a p value < 0.01. The results show that the value of k _t for wind-induced flow is proportional to the wind shear velocity and the inverse of the Reynolds number of the wind-induced current.     

The influences of industrial gross domestic product,urbanization rate,environmental investment,and coal consumption on industrial air pollutant emission in China

With the rapid economic development and urbanization, there would be severe air pollution. The path analysis method was employed to investigate the specific effects of Industrial Gross Domestic Product (IGDP), Urbanization Rate (UR), Environmental Investment (EI), and Coal Consumption (CC) on Industrial SO₂ Emissions (ISE) and Industrial Dust Emissions (IDE). The results shown that (1) IGDP is the main reason for the increase in ISE and IDE, with the direct positive influence more than 20% and a total contribution of more than 35%, and the combined effects of UR can reduce air pollutants emission considerably, especially in ISE. (2) The effects of EI and CC on ISE could be ignored, given that their contributions comprised <?10%. Meanwhile, the contribution of EI to IDE was only 8.92%. For one reason, EI is underfunded which the percentage of Gross Domestic Product was <?2%.     

Historical trends of organochlorine pesticides (OCPs) recorded in sediments across the Tibetan Plateau

Sediment cores from four lakes across the Tibetan Plateau were used as natural archives to study the time trends of organochlorine pesticides (OCPs). The total concentrations of dichlorodiphenyltrichloroethane (ΣDDT) and hexachlorocyclohexane isomers (ΣHCH) were in the range of 0.04–1.61 and 0.08–1.88 ng/g based on dry weight (dw), while the input fluxes were in the range of 0.3–236 and 0.7–295 pg/cm²/y in the core sediments, respectively. The input fluxes of ΣDDT and ΣHCH generally peaked in sediment layers corresponding to the 1970s–1990s and peaked in top sediment layers. The ratio of α/γ-HCH decreased in the top layer sediments, implying that the contribution of lindane (pure γ-HCH) has been increasing in recent years. In addition, the ratio of o,p′-DDT/p,p′-DDT increased significantly over the last 15–20 years, suggesting that dicofol (characterized by high ratio of o,p′-DDT/p,p′-DDT about 7.0) has recently become a relatively more important source of DDT compared to technical DDT itself. The time trends of OCPs recorded in lake sediments examined the impact on such remote alpine regions by human activities.     

Population structure of two northern hemisphere polychaetes,<Emphasis Type="Italic"> Neanthes virens</Emphasis> and<Emphasis Type="Italic"> Hediste diversicolor</Emphasis> (Nereididae), with different life-history traits

The present study compared population genetic structure of two northern hemisphere polychaetes, Neanthes virens (Sars, 1835) and Hediste diversicolor (O.F. Müller, 1776), with different life-history traits. N. virens has a pelagic larval phase that may last as long as 9 days, while H. diversicolor broods its offspring. It was predicted that N. virens populations, especially over relatively short geographic distances, would be more genetically similar than H. diversicolor populations. Sequence data were obtained for two mitochondrial genes, cytochrome c oxidase I (COI) and cytochrome b (cyt b). The COI gene showed no variation in 16 N. virens individuals from 12 locations, and it was not examined in H. diversicolor. The nucleotide sequence of the cyt b gene was examined in 93 N. virens individuals collected in 1992, 1999, and 2000 from 12 localities throughout its range (North America, Europe, Japan) and from 33 H. diversicolor individuals collected in 1999 and 2001 from one locality in eastern Canada and two localities in France (Roscoff and Marseille). In N. virens, one cyt b haplotype was shared by 89% (83 out of 93) and only two other haplotypes were found. Significant population structure was observed in H. diversicolor. In the 33 sequences compared, 18.9% of sites were polymorphic and 12 haplotypes were identified. There were two haplotypes in the Canadian population, three in the Marseille samples, and seven in the Roscoff samples, and no haplotype was found in common between any two sites. These results show that widely separated H. diversicolor populations are strongly differentiated at the cyt b locus. The most plausible interpretation for the low variation at the COI and cyt b loci in N. virens, and for the lack of variation at allozyme loci (based on an initial survey of a smaller subset of populations), is that this species has experienced a drastic bottleneck and that a few remaining lineages recolonized its entire range.     

Genetic structure of<Emphasis Type="Italic"> Linckia laevigata</Emphasis> and<Emphasis Type="Italic"> Tridacna crocea</Emphasis> populations in the Palawan shelf and shoal reefs

Allozyme variation of 10 populations of Linckia laevigata at 8 polymorphic loci and 13 populations of Tridacna crocea at 6 polymorphic loci were analyzed to compare genetic variability and genetic affinities among reefs in Palawan, Philippines. Two to five populations were sampled from each of four regions: the shelf reefs in (1) northern Palawan and (2) southern Palawan and the offshore reefs in (3) the Kalayaan island group (KIG) in the South China Sea and (4) the Tubbataha shoals in the Sulu Sea. Heterozygosity was highest in populations of L. laevigata from the south shelf of Palawan and populations of T. crocea from the Tubbataha shoals of the Sulu Sea. The lowest heterozygosity estimates were from the reefs of the KIG in the South China Sea, for both species. Overall F _ST values for both species were significant, with an estimated average number of effective migrants per generation (N _EM) of 4.85 (~5 individuals) for L. laevigata and 3.54 (~4 individuals) for T. crocea. Within-region comparisons showed N_EM ranging from 6.29 to 92.34 for L. laevigata and from 3.40 to 6.30 for T. crocea. The higher gene flow among L. laevigata populations relative to T. crocea is consistent with the greater dispersal potential of the former species. Finer scale genetic structuring was evident in T. crocea populations. For both species, the Tubbataha reefs in the Sulu Sea have higher genetic affinity with the populations from the southern shelf of Palawan, while the reefs in the KIG had higher affinity with the northern Palawan shelf reefs. The north and south shelf populations have the least genetic affinity. Genetic patchiness among reefs within regions suggests the importance of small-scale physical factors that affect recruitment success in structuring populations in small island and shoal reef systems in Palawan.     

Impact of logging activities in a tropical mangrove on ecosystem diversity and sediment heavy metal concentrations

Productivity of mangrove ecosystems is compromised by anthropogenic activities including over-exploitation of wood. This study set out to understand how different wood harvesting regimes have affected the biodiversity of a tropical ecosystem and to identify relationships between the heavy metal concentrations in the mangrove sediments and tree felling. Soil samples were collected and plant diversity studies carried out on seven sites in the mangrove. Physico-chemical, chemical and mineralogical analyses were done on soil samples and plant population structure, species richness, evenness and diversity index at these sites were calculated. Results showed that soils across sites were characteristically clayey and acidic, with high organic matter content. Minerals identified included quartz, gibbsite, goethite, hematite and kaolinite. Heavy metal concentrations were higher in Sites 6 and 7 with a longer history of anthropogenic activity. There were strong negative correlations between the duration of logging and NO₃-N (r = ?0.838, p = 0.019), total N (r = ?0.837, p = 0.019), NH₄ ⁺-N (r = ?0.844, p = 0.017), Mg = (?0.789, p = 0.035), K (r = ?0.819, p = 0.024), and Na (r = ?0.988, p = 0.002). Sites which had experienced logging for longer periods (sites 3, 6, and 7) had lower nutrient content and lower values for species richness and diversity index. Logging in mangrove ecosystems could alter soil characteristics, decreasing plant diversity and abundance. Logging dynamics around mangrove ecosystems should be considered in the wider strategy for management and conservation of similar mangrove ecosystems.     

Impacts of n-alkane concentration on soil bacterial community structure and alkane monooxygenase genes abundance during bioremediation processes

Petroleum hydrocarbons, mainly consisting of n-alkanes and polycyclic aromatic hydrocarbons (PAHs), are considered as priority pollutants and biohazards in the environment, eventually affecting the ecosystem and human health. Though many previous studies have investigated the change of bacterial community and alkane degraders during the degradation of petroleum hydrocarbons, there is still lack of understanding on the impacts of soil alkane contamination level. In the present study, microcosms with different n-alkane contamination (1%, 3% and 5%) were set up and our results indicated a complete alkane degradation after 30 and 50 days in 1%- and 3%-alkane treatments, respectively. In all the treatments, alkanes with medium-chain length (C₁₁-C₁₄) were preferentially degraded by soil microbes, followed by C₂₇-alkane in 3% and 5% treatments. Alkane contamination level slightly altered soil bacterial community, and the main change was the presence and abundance of dominant alkane degraders. Thermogemmatisporaceae, Gemmataceae and Thermodesulfovibrionaceae were highly related to the degradation of C₁₄- and C₂₇-alkanes in 5% treatment, but linked to alkanes with medium-chain (C₁₁-C₁₈) in 1% treatment and C₂₁-alkane in 3% treatment, respectively. Additionally, we compared the abundance of three alkane-monooxygenase genes, e.g., alk_A, alk_P and alk_R. The abundance of alk_R gene was highest in soils, and alk_P gene was more correlated with alkane degradation efficiency, especially in 5% treatment. Our results suggested that alkane contamination level showed non-negligible effects on soil bacterial communities to some extents, and particularly shaped alkane degraders and degrading genes significantly. This study provides a better understanding on the response of alkane degraders and bacterial communities to soil alkane concentrations, which affects their biodegradation process.

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