Maryland Biological Stream Survey: A State Agency Program to Assess the Impact of Anthropogenic Stresses on Stream Habitat Quality and Biota

The Maryland Department of Natural Resources is conducting the Maryland Biological Stream Survey, a probability-based sampling program, stratified by river basin and stream order, to assess water quality, physical habitat, and biological conditions in first through third order, non-tidal streams. These streams comprise about 90% of all lotic water miles in the state. About 300 sites (75 m segments) are being sampled during spring and summer each year. All basins in the state will be sampled over a three-year period, 1995-97. MBSS developments in 1995-96 included (1) an electrofishing capture efficiency correction method to improve the accuracy of fish population estimates, (2) two indices of biotic integrity (IBI) for fish assemblages to identify degraded streams, and (3) land use information for catchments upstream of sampled sites to investigate associations between stream condition and anthropogenic stresses. Based on fish IBI scores at 270 stream sites in six basins sampled in 1995, 11% of non-tidal stream miles in Maryland were classified as very poor, 15% as poor, 24% as fair, and 27% as good. IBIs have not yet been developed for stream sites with catchment areas less than 120 hectares (23% of non-tidal stream miles). IBI scores declined with stream acid neutralizing capacity (ANC) and pH, an association that was also evident for fish species richness, biomass, and density. Low IBI scores were associated with several measures of degraded stream habitat, but not with local riparian buffer width. There was a significant negative association between IBI scores and urban land use upstream of sampled sites in the only extensively urbanized basin assessed in 1995. Future plans for the MBSS include (1) identifying all benthic macroinvertebrate samples to genus, (2) developing benthic macroinvertebrate, herpetofaunal, and physical habitat indicators, and (3) enhancing the analysis of stream condition-stressor associations by refining landscape metrics and using multi-variate techniques.     

Development of a Provisional Physical Habitat Index for Maryland Freshwater Streams

Provisional physical habitat indices were developed and validatedfor Maryland Coastal and Non-Coastal Plain streams using variables (commonly called metrics) that best discriminated reference and degraded conditions based on biological, chemicaland land use data from the 1994–97 Maryland Biological Stream Survey (MBSS). These habitat indices contained variables that described structural, hydrological, vegetative and aesthetic components of stream habitat. Variables with the best discriminatory power for Coastal Plain streams were: instream habitat, velocity/depth diversity, pool/glide/eddy quality, embeddedness, maximum depth and aesthetic rating. Physical habitat variables with the best discriminatory power for Non-Coastal Plain sites were: instream habitat, velocity/depth diversity, riffle/run quality, embeddedness, number of rootwads and aesthetic rating. The overall classification efficiency forindex validation was 76% for both indices pooled over both strata. Scaled physical habitat index values (0–100) for bothstrata identified nearly twice as many good sites (31%) as very poor sites (16%). More than half the Maryland sites werein the poor to fair range (53%).     

Assessment of wadeable stream resources in the driftless area ecoregion in Western Wisconsin using a probabilistic sampling design

The Wisconsin Department of Natural Resources (WDNR), with support from the U.S. EPA, conducted an assessment of wadeable streams in the Driftless Area ecoregion in western Wisconsin using a probabilistic sampling design. This ecoregion encompasses 20% of Wisconsin’s land area and contains 8,800 miles of perennial streams. Randomly-selected stream sites (n = 60) equally distributed among stream orders 1–4 were sampled. Watershed land use, riparian and in-stream habitat, water chemistry, macroinvertebrate, and fish assemblage data were collected at each true random site and an associated “modified-random” site on each stream that was accessed via a road crossing nearest to the true random site. Targeted least-disturbed reference sites (n = 22) were also sampled to develop reference conditions for various physical, chemical, and biological measures. Cumulative distribution function plots of various measures collected at the true random sites evaluated with reference condition thresholds, indicate that high proportions of the random sites (and by inference the entire Driftless Area wadeable stream population) show some level of degradation. Study results show no statistically significant differences between the true random and modified-random sample sites for any of the nine physical habitat, 11 water chemistry, seven macroinvertebrate, or eight fish metrics analyzed. In Wisconsin’s Driftless Area, 79% of wadeable stream lengths were accessible via road crossings. While further evaluation of the statistical rigor of using a modified-random sampling design is warranted, sampling randomly-selected stream sites accessed via the nearest road crossing may provide a more economical way to apply probabilistic sampling in stream monitoring programs.     

Agriculture and elevation are the main factors for Pampasic stream habitat and water quality

Streams of the Pampasic plain in Southeastern South America are ecosystems affected by both water pollution and habitat alteration mainly due to agricultural activity. Water quality is influenced by the quality of habitats and both depend on land use and watershed morphology. The objective of this study was to determine the relationship between the variables of four factors: (1) the morphology of the watershed, (2) land use in the watershed, (3) river habitat, and (4) water quality of wadeable streams in Uruguay, as well as to determine the most representative variables to quantify such factors. We studied 28 watersheds grouped into three ecoregions and four principal activities, which generated seven zones with three to five streams each. Correlations between the variables of each factor allowed reducing the total number of variables from 57 to 32 to perform principal component analyses (PCA) by factor, reducing the number of variables to 18 for a general PCA. The first component was associated with water quality and elevation. The second was associated with the stream and watershed size, the third with habitat quality, and the fourth to the use of neighboring soils and objects in the channel. Our results indicate that agricultural intensity and elevation are the main factors associated with the habitat and water quality of these lowland streams. These factors must be especially considered in the development of water quality monitoring programs.     

Evaluation of R-EMAP Techniques for the Measurement of Ecological Integrity of Streams in Washington State's Coast Range Ecoregion

We used methods from EPA's Environmental Monitoring and Assessment Program (EMAP) to assess the regional status of streams within the Coast Range ecoregion of Washington State. Study objectives were: to determine the ecological condition of wadable, 1st-order through 3rd-order streams; to provide information for the development of water quality biological criteria; and to determine the applicability of EMAP-derived methods in Washington. Stream condition was assessed using EMAP indicators for habitat (chemical and physical) and biology (invertebrate and vertebrate assemblages). EMAP's probability survey was used to select 75 1st through 3rd-order stream sites from the USGS 1:100,000 series hydrographic layer. Of these, 45 sites were sampled. Multivariate techniques were used to identify community types and related physical and chemical habitat. Overall, about 25% of the sites were rated least-impacted. Most impacts were associated with non-point source pollution, mainly forestry practices. The R-EMAP method was a successful tool for assessment of regional status and ecological integrity; however, in order to use it for biological criteria development in Washington State, the method would require some modification to complement the current state protocols.     

The influence of suburban land use on habitat and biotic integrity of coastal Rhode Island streams

Watershed land use in suburban areas can affect stream biota through degradation of instream habitat, water quality, and riparian vegetation. By monitoring stream biotic communities in various geographic regions, we can better understand and conserve our watershed ecosystems. The objective of this study was to examine the relationship between watershed land use and the integrity of benthic invertebrate communities in eight streams that were assessed over a 3-year period (2001-2003). Sites were selected from coastal Rhode Island watersheds along a residential land-use gradient (4-59%). Using the rapid bioassessment protocol, we collected biological, physicochemical, habitat, and nutrient data from wadeable stream reaches and compared metrics of structure and integrity. Principal component analyses showed significant negative correlation of indicators for stream physicochemical, habitat, and instream biodiversity with increasing residential land use (RLU) in the watershed. The physicochemical variables that were most responsive to percent RLU were conductivity, instream habitat, nitrate, and dissolved inorganic nitrogen (DIN). The positive correlation of DIN with percent RLU indicated an anthropogenic source of pollution affecting the streams. The biotic composition of the streams shifted from sensitive to insensitive taxa as percent RLU increased; the most responsive biological variables were percent Ephemeroptera, percent Scrapers, percent Insects, and the Hilsenhoff biotic index. These data show the importance of land management and conservation at the watershed scale to sustaining the biotic integrity of coastal stream ecosystems.     

The Development of Biological Objectives for Streams in a Single Catchment: A Case Study on the Catchment of Western Port Bay, Victoria, Australia

Government environment protection policies for waterways have traditionally relied on water quality indicators and their objectives. In this paper we describe the development of biological objectives based on invertebrate indicators for inclusion in a government policy for the catchment of Western Port Bay, Victoria. The first step of defining segments (areas with streams in which the same objectives are applied) was problematic, requiring two different approaches, as follows. Site groups initially based on invertebrate community composition derived using multivariate techniques (ordination and classification) proved to be unsuitable for policy segments. Segment boundaries were subsequently defined using topographical (e.g. boundary of foothills and lowland plains), climate (e.g. rainfall) and land-use (e.g. urban) features. We used information and data from reference sites inside as well outside the catchment to derive specific biological objectives based on aquatic invertebrates for these segments. Objectives were specified for the following four indicators--number of invertebrate families, the SIGNAL index, the AUSRIVAS predictive model and the number of key families.     

Review of the effects of in-stream pipeline crossing construction on aquatic ecosystems and examination of Canadian methodologies for impact assessment

Pipeline crossing construction alters river and stream channels, hence may have detrimental effects on aquatic ecosystems. This review examines the effects of crossing construction on fish and fish habitat in rivers and streams, and recommends an approach to monitoring and assessment of impacts associated with these activities. Pipeline crossing construction is shown to not only compromise the integrity of the physical and chemical nature of fish habitat, but also to affect biological habitat (e.g., benthic invertebrates and invertebrate drift), and fish behavior and physiology. Indicators of effect include: water quality (total suspended solids TSS), physical habitat (substrate particle size, channel morphology), benthic invertebrate community structure and drift (abundance, species composition, diversity, standing crop), and fish behavior and physiology (hierarchy, feeding, respiration rate, loss of equilibrium, blood hematocrit and leukocrit levels, heart rate and stroke volume). The Before-After-Control-Impact (BACI) approach, which is often applied in Environmental Effects Monitoring (EEM), is recommended as a basis for impact assessment, as is consideration of site-specific sensitivities, assessment of significance, and cumulative effects.     

Relations of Habitat-Specific Algal Assemblages to Land Use and Water Chemistry in the Willamette Basin, Oregon

Benthic algal assemblages, water chemistry, and habitat were characterized at 25 stream sites in the Willamette Basin, Oregon, during low flow in 1994. Seventy-three algal samples yielded 420 taxa — mostly diatoms, blue-green algae, and green algae. Algal assemblages from depositional samples were strongly dominated by diatoms (76% mean relative abundance), whereas erosional samples were dominated by blue-green algae (68% mean relative abundance).Canonical correspondence analysis (CCA) of semiquantitative and qualitative (presence/absence) data sets identified four environmental variables (maximum specific conductance, % open canopy, pH, and drainage area) that were significant in describing patterns of algal taxa among sites. Based on CCA, four groups of sites were identified: streams in forested basins that supported oligotrophic taxa, such as Diatoma mesodon;small streams in agricultural and urban basins that contained a variety of eutrophic and nitrogen-heterotrophic algal taxa; larger rivers draining areas of mixed land use that supported planktonic, eutrophic, and nitrogen-heterotrophic algal taxa; and streams with severely degraded or absent riparian vegetation (> 75% open canopy) that were dominated by other planktonic, eutrophic, and nitrogen-heterotrophic algal taxa. Patterns in water chemistry were consistent with the algal autecological interpretations and clearly demonstrated relationships between land use, water quality, and algal distribution patterns.     

Quality comparison of tap water vs. bottled water in the industrial city of Yanbu (Saudi Arabia)

The objective of this study was to determine the relative influence of reach-specific habitat variables and geographic location on benthic invertebrate assemblages within six ecoregions across the Western USA. This study included 417 sites from six ecoregions. A total of 301 taxa were collected with the highest richness associated with ecoregions dominated by streams with coarse substrate (19-29 taxa per site). Lowest richness (seven to eight taxa per site) was associated with ecoregions dominated by fine-grain substrate. Principle component analysis (PCA) on reach-scale habitat separated the six ecoregions into those in high-gradient mountainous areas (Coast Range, Cascades, and Southern Rockies) and those in lower-gradient ecoregions (Central Great Plains and Central California Valley). Nonmetric multidimensional scaling (NMS) models performed best in ecoregions dominated by coarse-grain substrate and high taxa richness, along with coarse-grain substrates sites combined from multiple ecoregions regardless of location. In contrast, ecoregions or site combinations dominated by fine-grain substrate had poor model performance (high stress). Four NMS models showed that geographic location (i.e. latitude and longitude) was important for: (1) all ecoregions combined, (2) all sites dominated by coarse-grain sub strate combined, (3) Cascades Ecoregion, and (4) Columbia Ecoregion. Local factors (i.e. substrate or water temperature) seem to be overriding factors controlling invertebrate composition across the West, regardless of geographic location.     

Benthic communities of streams related to different land uses in a hydrographic basin in southern Brazil

Different land uses affect the characteristics of a hydrographic basin, reflected in the river water quality, and consequently affecting the aquatic biota. The benthic community closely reflects the alterations caused by different human activities. In this study, the effects of different land uses were evaluated by analysis of the benthic community structure in streams with urban, agricultural and pasturage influences, as well as areas in better-conserved regions. The abiotic parameters showed distinct seasonal variability, which did not occur with the benthic organisms. A degradation gradient was observed among the study sites, in the headwaters-agriculture-pasture-urban direction. By the CCA its possible to observe that the density of organisms tended to increase along this gradient, whereas richness, diversity, evenness, and EPT families decreased. The most intense effects of land use on the benthic community composition, richness, and diversity were observed in urban areas (F (1,4) = 16.0, p = 0.01; F (1,4) = 8.97, p = 0.04; respectively). In conclusion a trend in the benthic community is observed in to predict alterations caused for the different land uses, mainly, when the source point pollution, as the case of urban area.     

Relationships of sedimentation and benthic macroinvertebrate assemblages in headwater streams using systematic longitudinal sampling at the reach scale

Investigating relationships of benthic invertebrates and sedimentation is challenging because fine sediments act as both natural habitat and potential pollutant at excessive levels. Determining benthic invertebrate sensitivity to sedimentation in forested headwater streams comprised of extreme spatial heterogeneity is even more challenging, especially when associated with a background of historical and intense watershed disturbances that contributed unknown amounts of fine sediments to stream channels. This scenario exists in the Chattahoochee National Forest where such historical timber harvests and contemporary land-uses associated with recreation have potentially affected the biological integrity of headwater streams. In this study, we investigated relationships of sedimentation and the macroinvertebrate assemblages among 14 headwater streams in the forest by assigning 30, 100-m reaches to low, medium, or high sedimentation categories. Only one of 17 assemblage metrics (percent clingers) varied significantly across these categories. This finding has important implications for biological assessments by showing streams impaired physically by sedimentation may not be impaired biologically, at least using traditional approaches. A subsequent multivariate cluster analysis and indicator species analysis were used to further investigate biological patterns independent of sedimentation categories. Evaluating the distribution of sedimentation categories among biological reach clusters showed both within-stream variability in reach-scale sedimentation and sedimentation categories generally variable within clusters, reflecting the overall physical heterogeneity of these headwater environments. Furthermore, relationships of individual sedimentation variables and metrics across the biological cluster groups were weak, suggesting these measures of sedimentation are poor predictors of macroinvertebrate assemblage structure when using a systematic longitudinal sampling design. Further investigations of invertebrate sensitivity to sedimentation may benefit from assessments of sedimentation impacts at different spatial scales, determining compromised physical habitat integrity of specific taxa and developing alternative streambed measures for quantifying sedimentation.     

Development of a reference coastal wetland set in Southern New England (USA)

Various measures of plants, soils, and invertebrates were described for a reference set of tidal coastal wetlands in Southern New England in order to provide a framework for assessing the condition of other similar wetlands in the region. The condition of the ten coastal wetlands with similar hydrology and geomorphology were ranked from least altered to highly altered using a combination of statistical methods and best professional judgment. Variables of plants, soils, and invertebrates were examined separately using principal component analysis to reduce the multidimensional variables to principal component scores. The first principal component scores of each set of variables (i.e., plants, soil, invertebrates) significantly (p?<?0.05) correlated with both residential land use and watershed nitrogen (N) loads. Using cumulative frequency diagrams, the first principal component scores of each plant, soil, and invertebrate data set were plotted, and natural breaks and best professional judgment were used to rank the first principal component scores among the sites. We weighted all three ranked components equally and calculated an overall salt marsh condition index by summing the three ranks and then transforming the index to a 0–1 scale. The overall salt marsh condition index for the reference coastal wetland set significantly correlated with the residential land use (R?=???0.87, p?=?0.001) and watershed N loads (R?=???0.86, p?=?0.001). Overall, condition deteriorated in salt marshes and their associated discharge streams when subjected to increasing watershed residential land use and N loads.     

Biomonitoring in the Boulder River Watershed, Montana, USA: Metal Concentrations in Biofilm and Macroinvertebrates, and Relations with Macroinvertebrate Assemblage

Portions of the Boulder River watershed contain elevated concentrations of arsenic, cadmium, copper, lead, and zinc in water, sediment, and biota. We measured concentrations of As, Cd, Cu, Pb, and Zn in biofilm and macroinvertebrates, and assessed macroinvertebrate assemblage and aquatic habitat with the objective of monitoring planned remediation efforts. Concentrations of metals were generally higher in downstream sites compared with upstream or reference sites, and two sites contained metal concentrations in macroinvertebrates greater than values reported to reduce health and survival of resident trout. Macroinvertebrate assemblage was correlated with metal concentrations in biofilm and macroinvertebrates. However, macroinvertebrate metrics were significantly correlated with a greater number of biofilm metals (8) than metals in invertebrates (4). Lead concentrations in biofilm appeared to have the most significant impact on macroinvertebrate assemblage. Metal concentrations in macroinvertebrates were directly proportional to concentrations in biofilm, indicating biofilm as a potential surrogate for monitoring metal impacts in aquatic systems.     

Assessing the ecological condition of streams in a southeastern Brazilian basin using a probabilistic monitoring design

Prompt assessment and management actions are required if we are to reduce the current rapid loss of habitat and biodiversity worldwide. Statistically valid quantification of the biota and habitat condition in water bodies are prerequisites for rigorous assessment of aquatic biodiversity and habitat. We assessed the ecological condition of streams in a southeastern Brazilian basin. We quantified the percentage of stream length in good, fair, and poor ecological condition according to benthic macroinvertebrate assemblage. We assessed the risk of finding degraded ecological condition associated with degraded aquatic riparian physical habitat condition, watershed condition, and water quality. We describe field sampling and implementation issues encountered in our survey and discuss design options to remedy them. Survey sample sites were selected using a spatially balanced, stratified random design, which enabled us to put confidence bounds on the ecological condition estimates derived from the stream survey. The benthic condition index indicated that 62 % of stream length in the basin was in poor ecological condition, and 13 % of stream length was in fair condition. The risk of finding degraded biological condition when the riparian vegetation and forests in upstream catchments were degraded was 2.5 and 4 times higher, compared to streams rated as good for the same stressors. We demonstrated that the GRTS statistical sampling method can be used routinely in Brazilian rain forests and other South American regions with similar conditions. This survey establishes an initial baseline for monitoring the condition and trends of streams in the region.     

Biomonitoring of Lead, Zinc, and Cadmium in Streams Draining Lead-Mining and Non-Mining Areas, Southeast Missouri, USA

We evaluated exposure of aquatic biota to lead (Pb), zinc (Zn), and cadmium (Cd) in streams draining a Pb-mining district in southeast Missouri. Samples of plant biomass (detritus, periphyton, and filamentous algae), invertebrates (snails, crayfish, and riffle benthos), and two taxa of fish were collected from seven sites closest to mining areas (mining sites), four sites further downstream from mining (downstream sites), and eight reference sites in fall 2001. Samples of plant biomass from mining sites had highest metal concentrations, with means 10- to 60-times greater than those for reference sites. Mean metal concentrations in over 90% of samples of plant biomass from mining sites were significantly greater than those from reference sites. Mean concentrations of Pb, Zn, and Cd in most invertebrate samples from mining sites, and mean Pb concentrations in most fish samples from mining sites, were also significantly greater than those from reference sites. Concentrations of all three metals were lower in samples from downstream sites, but several samples of plant biomass from downstream sites had metal concentrations significantly greater than those from reference sites. Analysis of supplemental samples collected in the fall of 2002, a year of above-average stream discharge, had lower Pb concentrations and higher Cd concentrations than samples collected in 2001, near the end of a multi-year drought. Concentrations of Pb measured in fish and invertebrates collected from mining sites during 2001 and 2002 were similar to those measured at nearby sites in the 1970s, during the early years of mining in the Viburnum Trend. Results of this study demonstrate that long-term Pb mining activity in southeast Missouri has resulted in significantly elevated concentrations of Pb, Cd, and Zn in biota of receiving streams, compared to biota of similar streams without direct influence of mining. Our results also demonstrate that metal exposure in the study area differed significantly among sample types, habitats, and years, and that these factors should be carefully considered in the design of biomonitoring studies.     

Spatial heterogeneity of stream environmental conditions and macroinvertebrates community in an agriculture dominated watershed and management implications for a large river (the Liao River,China) basin

Understanding the effects of watershed land uses (e.g., agriculture, urban industry) on stream ecological conditions is important for the management of large river basins. A total of 41 and 56 stream sites (from first to fourth order) that were under a gradient of watershed land uses were monitored in 2009 and 2010, respectively, in the Liao River Basin, Northeast China. The monitoring results showed that a total of 192 taxa belonging to four phyla, seven classes, 21 orders and 91 families were identified. The composition of macroinvertebrate community in the Liao River Basin was dominated by aquatic insect taxa (Ephemeroptera and Diptera), Oligochaeta and Molluscs. The functional feeding group GC (Gatherer/Collector) was dominant in the whole basin. Statistical results showed that sites with less watershed impacts (lower order sites) were characterized by higher current velocity and habitat score, more sensitive taxa (e.g., Ephemeroptera), and the substrate was dominated by high percentage of cobble and pebble. The sites with more impacts from agriculture and urban industry (higher order sites) were characterized by higher biochemical (BOD₅) and chemical oxygen demand (COD), more tolerant taxa (e.g., Chironominae), and the substrate was dominated by silt and sand. Agriculture and urban-industry activities have reduced habitat condition, increased organic pollutants, reduced macroinvertebrate abundance, diversity, and sensitive taxa in streams of the lower Liao River Basin. Restoration of degraded habitat condition and control of watershed organic pollutants could be potential management priorities for the Basin.     

Linking stream and landscape trajectories in the southern Appalachians

A proactive sampling strategy was designed and implemented in 2000 to document changes in streams whose catchment land uses were predicted to change over the next two decades due to increased building density. Diatoms, macroinvertebrates, fishes, suspended sediment, dissolved solids, and bed composition were measured at two reference sites and six sites where a socioeconomic model suggested new building construction would influence stream ecosystems in the future; we label these "hazard sites." The six hazard sites were located in catchments with forested and agricultural land use histories. Diatoms were species-poor at reference sites, where riparian forest cover was significantly higher than all other sites. Cluster analysis, Wishart's distance function, non-metric multidimensional scaling, indicator species analysis, and t-tests show that macroinvertebrate assemblages, fish assemblages, in situ physical measures, and catchment land use and land cover were different between streams whose catchments were mostly forested, relative to those with agricultural land use histories and varying levels of current and predicted development. Comparing initial results with other regional studies, we predict homogenization of fauna with increased nutrient inputs and sediment associated with agricultural sites where more intense building activities are occurring. Based on statistical separability of sampled sites, catchment classes were identified and mapped throughout an 8,600 km(2) region in western North Carolina's Blue Ridge physiographic province. The classification is a generalized representation of two ongoing trajectories of land use change that we suggest will support streams with diverging biota and physical conditions over the next two decades.     

成都市河流生态健康评价

研究以成都市域内河流为研究对象,通过采样分析得到水质、生境状况、浮游藻类、底栖动物等相关指标,利用综合指标体系法,评价成都市域内河流生态系统健康状况,并结合成都市人口、土地利用、地区生产总值等因素分析人类活动与河流生态健康的关系。结果表明:成都市河流浮游藻类以硅藻和绿藻为主,部分中下游采样点出现以蓝藻为主的情况;底栖动物以指示有机污染的颤蚓科出现的频率最高,约48%的采样点以颤蚓科为优势种;约74%的河流生态健康状况为"差"或"很差",河流生态健康状况整体呈现中上游优于下游、城市周边优于市区的特征;人口密度、人类活动用地比例与河流中氨氮呈显著正相关,人类活动会显著影响河流生态系统健康。     

Relationships between aquatic invertebrate communities,water-level fluctuations and different habitats in a subtropical lake

In lakes, the littoral habitat and its invertebrate communities are often exposed to water-level fluctuations. We examined the effects of seasonal changes on water level, substrata availability and benthic fauna in the littoral zone of Peri Lake, a shallow lake that has experienced a strong reduction in water level due to changes in rainfall. In this study, we also examined whether the abundance and composition of aquatic invertebrates differed among the four substrata. Our main objective was to assess the effect of seasonal changes on water level and benthic invertebrates inhabiting the different types of substrata. Benthic invertebrates were sampled four different substrata (Schoenoplectus californicus, sand and stones, allochthonous leaf litter, and macrophyte stands), and we also measured meteorological, physical and chemical variables. We found that complex habitats, such as allochthonous leaf litter and aquatic macrophyte, stand to be colonised by a larger number of macroinvertebrates because they provide more habitats or potential niches for colonisation by different species. In addition, we observed that during periods of low water level, the presence of substrata in the littoral zone decreased, as did the associated biota. Therefore, our results suggest that water level changes have a major functional impact on the littoral zone of the lake, and can affect substratum availability, which also impacts invertebrate communities.