Comparative Analysis of Microbial Communities of Contrasting Soil Types in Different Plant Communities

Microbiomes were analyzed in samples of the major soil types of Russia and Western Kazakhstan region from different plant communities (fallow, forest, agrophytocenosis). The representatives of 42 bacterial and 2 archaeal phyla were identified in the samples, among which the dominant positions were occupied by representatives of ten phyla: nine bacterial (Actinobacteria (33.5%), Proteobacteria (28.4%), Acidobacteria (8.3%), Verrucomicrobia (7.7%), Bacteroidetes (4.2%), Chloroflexi (3.0%), Gemmatimonadetes (2.3%), Firmicutes (2.1%), Planctomycetes (2.0%)) and one archaeal Crenarchaeota (2.6%). Data analysis by the methods of multivariate statistics suggests that the taxonomic structure of microbiota is formed under the action of two main factors: the strongest factor is soil acidity, which determines the dynamics of the microbiome at the level of major taxa such as phylum, and the weaker factor is the type of vegetation, which determines the community structure at lower taxonomic level (order, family, genus). Detailed analysis of the samples of podzolic soil in Leningrad Region made it possible to identify bacterial taxa specifically associated both with the type of biome (fallow, forest, agrophytocenosis) and with the specific plant community (specific composition of plant synusia).     

Drought Stress in Four Subalpine Species: Gas Exchange Response and Survivorship

An assessment of adaptability of saplings of four evergreen species (Picea abies Karst., Pinus mugo Turra, Pinus peuce Grisb. and Pinus heldreichii H. Christ.), native for Bulgarian treeline zone, was made on the basis of leaf gas exchange and survivability in artificially induced drought stress. The established low sensitivity of gas exchange to summer drought and the highest mortality of P. abies may be regarded as an evidence for a narrow zone of tolerance. P. peuce and P. heldreichii have low survivorship under drought conditions, regardless of the variable effect of soil moisture on the gas exchange parameters. The better survivability and significant reduction of gas exchange in response to soil water deficit of P. mugo probably will give him an advantage in future adaptation to climate change and in competition with other subalpine species. We conclude that the expected trends in climate change will most likely lead to a further narrowing of the ecological and physiological comfortable zone for two investigated endemic species.     

Diversity and Nitrogen-Fixing Activity of Phototrophic Mycetobionts of Xylotrophic Fungi

It is shown that the basidiocarps of many wood-decomposing fungi are inhabited by taxonomically and biomorphologically various eukaryotic (Charophyta, Chlorophyta, and Ochrophyta) and prokaryotic (Cyanophyta/Cyanobacteria) algae. They represent widespread eurybiont species and do not include any specialized mycetobionts. The communities formed by them have a host preference and green algae are their basic and obligate component, while other organisms are facultative components. Basidiocarps in which mycetobionts include heterocytic cyanoprokaryotes (Anabaena sp., Calothrix parietina, Hassallia byssoidea, Nostoc commune, N. punctiforme, Nostoc sp., and Scytonema ocellatum) are capable of molecular nitrogen fixation. Its activity is 0.044–0.903 mg of C₂H₄/m²/h in the basidiocarps of Bjerkandera adusta, Cerrena unicolor, Gloeophyllum sepiarium, and Trametes ochracea and 0.001–0.008 mg of C₂H₄/m²/h in the basidiocarps of Onnia leporina, Phellinus chrysoloma, Ph. tremulae, and Trametes pubescens. Basidiocarps without algae and those inhabited only by eukaryotic algae have no nitrogenase activity.     

Total soil available nitrogen under perennial grasses after burning and defoliation

Total soil available nitrogen concentrations (NO^–3 + NH ₄ ⁺ ) were determined underneath plants of the more-competitive Poa ligularis, mid-competitive Nassella tenuis and the less-competitive Amelichloa ambigua exposed to various combinations of controlled burning and defoliation treatments. Defoliations were at the vegetative (V), internode elongation (E) or both developmental morphology stages (V + E) during two years after burning in northeastern Patagonia, Argentina. Hypotheses were that (1) concentrations of total soil available nitrogen after burning are greater underneath burned than unburned plants. With time, these differences, however, will gradually disappear; (2) greater total soil available nitrogen concentrations are underneath plants of the more- than less-competitive perennial grasses; and (3) total soil available nitrogen is similar or lower underneath plants defoliated at the various developmental morphology stages in all three study species than on untreated controls at the end of the study. Concentration of total soil available nitrogen increased 35% (p < 0.05) on average after the first six months from burning in comparison to control plants. However, these differences disappeared (p > 0.05) towards the end of the first study year. Total soil available nitrogen concentrations were at least 10% lower underneath the less competitive N. tenuis and A. ambigua than the more competitive P. ligularis on average for all treatments, although differences were not significant (p > 0.05) most of the times. Defoliation had practically no effect on the concentration of total soil available nitrogen. Rather than any treatment effect, total soil nitrogen concentrations were determined by their temporal dynamics in the control and after the experimental fire treatments.     

Interspecific interactions of amphipods <Emphasis Type="Italic">Gammarus lacustris</Emphasis> and <Emphasis Type="Italic">Gmelinoides fasciatus</Emphasis>

Experimental studies of interactions between two amphipod species (Gmelinoides fasciatus and Gammarus lacustris) showed that predation is the basic mechanism accounting for their mutual exclusion in nature. Mortality from predation among similar-sized specimens of both species at an equal abundance ratio was similar (24–25% in G. lacustris and 27–30% in G. fasciatus). The displacement of G. lacustris by G. fasciatus was observed when the latter was dominant. Adult G. fasciatus and G. lacustris successfully preyed on juveniles of their competitors and did not differ significantly in daily food consumption as a percentage of body weight: 6–24% at a fresh body weight of 18–24 mg in both species. The potential for rapid population growth under new conditions contributed to the success of the invasive Baikal species G. fasciatus in displacing G. lacustris from many water bodies of Russia.     

Estimating ‘rhizosphere priming effect’: Comparison of the indirect <Emphasis Type="Italic">y</Emphasis>-intercept regression approach and direct bare plot Approach

Determined the contribution of root derived CO₂ efflux to total CO₂ efflux (including root and non-root derived CO₂ efflux) is import to grope the mechanism of CO₂ efflux, however, becaused of ‘rhizoshere priming effect’ (RPE), it is difficult to achieve in practice. In this study, we attempted to estimate the RPE via comparing basal soil respiration (R_b) achieved by two different methods namely, y-intercept regression and direct bare plot approach in an arid cotton field, central Asia. On the basis of the y-intercept of linear regressions between below-ground respiration (BGR) and root biomass, R_b was indirectly calculated. Comparing with the first approach, the second approach involved direct measurements of soil respiration from bare plots. R_b estimated by y-intercept method contained the component of RPE whereas direct bare plot did not. We found that RPE showed a phenological trend with highest value in flowering stage at 0.145 g CO₂ m^–2 h^–1 and lowest at budding stage (0.007 g CO₂ m^–2 s^–1), even after the data had been corrected for the influence of soil temperature. We concluded that RPE needed to be considered when R_b was estimated by y-intercept approach.     

Ecological and faunistic characteristics of the leech fauna in the Bukhtarma Reservoir,Eastern Kazakhstan

The taxonomic diversity of the Hirudinea fauna and its dependence on the ecological conditions in the Bukhtarma Reservoir (Eastern Kazakhstan) have been studied. The morphological analysis has shown that these leeches belong to two orders and three families: Rhynchobdellida (families Glossiphoniidae and Piscicolidae) and Arhynchobdellida (family Erpobdellidae). On the whole, eight leech species from five genera (Alboglossiphonia, Helobdella, Theromyzon, Piscicola, and Erpobdella) have been identified. Among them, there are three glossiphoniid species (A. heteroclite, H. stagnalis, and T. tessulatum), two species of piscicolids (Piscicola geometra and Piscicola sp.), and three species of predatory leeches (E. octoculata, E. vilnensis, and Erpobdella sp.). Possible effects of hydrochemical parameters of the aquatic environment on the species diversity have been analyzed. Correlation has been revealed between the abundance of species and the physical and chemical characteristics of the environment.     

A global change of specialization and generalization in pollination networks from the plant perspective

A view of pollination systems is that they tend to generalization. Here we show that patterns exist in pollination systems that suggest otherwise. We examine how specialization may be affected by latitude, species richness and plant life-forms in 33 plant-pollinator interaction networks. Connectance increases with latitude (P = 0.040), but specialization at the community level significantly declines with increasing latitude, with the strongest evidence in the Northern Hemisphere (P = 0.001). The relationship between specialization level and connectance is negative (P < 0.001). While plants are more specialized in tropical areas and are more generalized at higher latitudes, specialization level also increases with plant richness (P < 0.001), total species richness (P = 0.041) and network size (P = 0.009). Specialization level of life forms of 1129 species differ substantially (P < 0.001), with herbs showing the highest specialization (74%), and tree species the lowest (62%).     

Current state and long-term changes of the <Emphasis Type="Italic">Crenomytilus grayanus</Emphasis> community in Vostok Bay,Sea of Japan

The composition and structure of the Gray mussel (Crenomytilus grayanus) community in Vostok Bay of the Sea of Japan have been studied. A total of 165 species have been identified in the macrobenthos. Its species composition has changed insignificantly since the 1970s. The total biomass of the biocenosis has decreased, and the size-age composition of the C. grayanus population has changed due to poaching. The trophic structure of the community has also changed, with the Shannon indices of species diversity and equitability (E) becoming lower, due to intensive organic pollution of Vostok Bay resulting from increasing recreational activities and sewage discharge.     

Effect of illumination regime on life span in <Emphasis Type="Italic">Drosophila melanogaster</Emphasis>

Accelerated aging of Drosophila strains with impaired detoxification of free radicals (Sod) and DNA repair (mus-210) under illumination as compared to the wild type has been demonstrated. In contrast, in a strain carrying a defective homolog of mammalian gene PCNA, the life span increases under conditions of round-the-clock illumination compared to constant darkness. The first review of the possible mechanisms underlying the effect of the illumination regime on the life span is presented, with special emphasis on the roles of the disturbance of normal circadian rhythms, increase in fecundity and physical activity (metabolic rate), and the neuroendocrine control of the insulin/IGF-1 pathway.     

Assessment of nonselective elimination effects in rodent communities by methods of geometric morphometrics

Methods of geometric morphometrics and population phenogenetics have been used to evaluate morphogenetic rearrangements in two sympatric species of Myodes voles (M. glareolus Schreb. 1780 and M. rutilus Pall. 1779) from syntopic populations recovering after exposure to local “ecological vacuum” created as a result of rodent extermination in a natural focus of hemorrhagic fever in the southern taiga subzone of the Udmurt Republic. The model used in the study simulates the situation that arises upon nonselective elimination of rodent populations and communities in spring and their subsequent recovery. Analysis of variation in the size and shape of the mandible and in a complex of 30 nonmetric cranial characters has revealed similar (parallel) and species-specific morphogenetic and epigenetic changes occurring during the recovery of local rodent community. Species-specific differences in the pattern of change in the parameter characterizing within-group morphological disparity in the mandible shape (MNND) have been revealed between the dominant species (M. glareolus) and the subdominant species competing with it for territory (M. rutilus). Different reactions of close Myodes species in the course of filling the ecological vacuum are considered as a result of reduction in the level of competition for the subdominant species and a compensatory increase of morphological disparity in the dominant species under conditions of low density and incomplete composition of the community, in accordance with Chernov’s (2005) ecological compensation principle.     

Pollination ecology of <Emphasis Type="Italic">Eomecon chionantha</Emphasis> Hance (Papaveraceae), an endemic species in China

Eomecon chionantha Hance, the only species in the genus Eomecon, is an angiosperm species endemic to China. Here we investigated the pollination syndrome, pollinator generalization of E. chionantha. Our results showed that the individual flower longevity of E. chionantha was 3–5 days. The flowering phenology of E. chionantha can be divided into five phases. We found significant differences in the pollination efficiency of the different insects visiting E. chionantha with bees and flies being the most efficient pollinators. This, in addition to floral morphology and phenology, suggests that E. chionantha is generalized on bees and flies and possesses an outcrossing, partially self-compatible and pollinator-dependent breeding system.     

Species richness,structure, and conservation of <Emphasis Type="Italic">Nitraria retusa</Emphasis> communities in the coastal salt marshes of Kuwait

Although the coastal salt marshes of Arabian Gulf have been altered extensively by human development activities, there is a paucity of data describing changes in the distribution and abundance of native coastal plant communities. The main objectives of this study are to determine vegetation condition, size structure, and conservation status of Nitraria retusa, a medicinal and salt-tolerant shrub, in disturbed and non-disturbed coastal salt marshes of Kuwait. Size measurements of Nitraria shrubs and nabkas, which are mounds of sediment developed around shrubs, were carried out in 50 quadrats (20 × 20 m²), randomly selected inside and outside Sabah Al-Ahmad Natural Reserve. Species richness and soil properties of nabkas and interspaces, the open areas between the nabkas, were also measured. The results revealed that nabkas of Nitraria in non-disturbed sites are more stable and rich in plant diversity than those in disturbed sites. Mean height and mean canopy diameter of Nitraria shrubs, total plant cover, and species richness are significantly higher in non-disturbed sites than disturbed sites, which indicate the positive influences of conservation for long term on vegetation structure and species richness. The results of soil analyses indicate the important role of nabkas in providing refuges for plant life and species diversity. The present study indicates that more than 50 % of the N. retusa community has been lost during the last few decades. Therefore, N. retusa should be considered an endangered species in Kuwait. The reduction in vegetation cover, a decline in species richness, and the overall degradation of salt marshes are attributed to human development activities along the coast of Kuwait. Effective conservation actions for threatened species in degraded coastal salt marshes of this region include establishment of protective enclosures, prohibitions on development that adversely affects native plant communities, and the planting native salt-tolerant shrubs to facilitate regeneration.     

Most Interesting Findings from Remnants of Chironomid (Insecta: Diptera: Chironomidae) Larvae in Layers of a 200-Year-Old Stratum of Lake Oron Bottom Sediments

The remnants of chironomid larvae from layers of the 10-cm-thick bottom sediment in Lake Oron have been studied. Six taxons unknown in the current chironomid fauna of the lake have been identified: Abiskomyia rivalis, Corynoneura arctica-type, Mesocricotopus thienemanni, Metriocnemus eurynotus-type, Nanocladius rectinervis-type, and Robackia pilicauda. The most probable reasons for the disappearance of these species from the Oron fauna, which are related to environmental changes caused by global climate changes, are considered.     

Plant Species Richness and Developmental Morphology Stage Influence Mycorrhizal Patagonia Plants Root Colonization

The objectives of this study were to determine the percentage of root colonization by arbuscular mycorrhizal (AM) fungi at various levels of plant species richness and developmental morphology stages in various perennial grass, and herbaceous and woody dicots species using experimental plots during 2013 and 2014. An auger was used to obtain six replicate root + soil samples at each sampling time on each of the study parameters. Roots were washed free of soil, and percentage AM was determined. The shrub Larrea divaricata was the species which showed the lowest percentage of colonization by AM at the vegetative developmental morphology stage at the monocultures and six-species-mixtures on the experimental plots. Dicots, but not grass, species showed a greater percentage colonization by AM fungi at the greatest (i.e., six-species-mixtures) than lowest (i.e., monocultures) species richness. Although at different degrees of species richness and developmental morphology stages, the perennial grasses Nassella longiglumis and N. tenuis, the herbaceous dicot Atriplex semibaccata, and the shrubs L. divaricata and Schinus fasciculatus showed a greater (p < 0.050) percentage colonization by AM fungi during the second than the first study year. Even though it was species- and sampling time-dependent, percentage colonization by AM fungi increased as species richness also increased most of the times. Our results demonstrated that the plant species differences in percentage colonization by AM fungi in the experimental plots were species richness-, developmental morphology stage-, and sampling-time dependents.     

The structure of absorbing roots in invasive and native maple species

Specific structural features of absorbing roots have been studied in Acer negundo (an invasive species in the southern Cisural region), compared to native Acer platanoides and A. tataricum. A comparative analysis of the diameter of fine roots, stele and bark volumes, and the frequencies of roots with retained primary bark, root hairs, arbuscular mycorrhiza, and dark septate endophytes has been performed in the invasive and native species from four habitats (by two habitats in the forest–steppe and steppe zones). The roots of A. negundo have been additionally studied in trees from two monospecific stands. It has been found that the structure of fine roots significantly differs between the invasive and native species: the roots of A. negundo are larger, with relatively poorly developed root hairs and low occurrence of dark septate endophytes. In monospecific stands, the frequency of mycorrhiza in A. negundo roots is very low, with arbuscules and dark septate endophytes being totally absent. It is concluded that specific structural features of the belowground absorbing apparatus in A. negundo are accounted for mainly by traits autonomously formed in a plant, rather than by characteristics of symbiotic relationships, and that they are not consistent with the assumption that the invasive species can utilize soil resources more effectively or more rapidly than taxonomically close native species.     

Implications of future bioclimatic shifts on Portuguese forests

As climate is an important driver of vegetation distribution, climate change represents an important challenge to forestry. We (1) identify prevailing bioclimatic conditions for 49 relevant forest species in Portugal and (2) assess future shifts under climate change scenarios. We compute two bioclimatic indices (aridity and thermicity) and a new composite index, at ~1 km spatial resolution, and overlap with the species’ current ranges. Locations are based on a digital inventory, while climate parameters for both recent-past (1950–2000) and future climates (2041–2060), under RCP4.5 and RCP8.5, are provided by a multi-model ensemble of climate simulations. Results for future scenarios highlight an overall warming and drying trend. Supramediterranean and mesomediterranean climates will be significantly reduced, while thermomediterranean climates will dramatically increase, from their almost absence in current conditions to an area coverage of ~54 % in 2041–2060 for RCP8.5. There is also a clear shift from hyper-humid and humid to sub-humid and from the latter to semi-arid climates (area coverage of ~13 % in 2041–2060 for RCP8.5). Lower thermomediterranean sub-humid to semi-arid zones will cover the southern half of Portugal. These projections identify the most vulnerable (e.g. Betula pubescens, Quercus pyrenaica and Castanea sativa) and the most adapted (e.g. Quercus suber, Q. rotundifolia, Ceratonia siliqua, Pinus pinea, Quercus coccifera) species in future climates. Current bioclimatic zones associated with Eucalyptus globulus and Pinus pinaster, economically relevant species, will be moderately reduced and relocated. Possible adaptation measures are discussed to improve forest resilience to climate change, while maintaining its economic and environmental benefits.     

On adaptations of trees and shrubs in the north of the Russian Far East

Specific ecological features of trees (Chosenia arbutifolia and Betula lanata) and shrubs (Pinus pumila and Duschekia fruticosa) at the northern limit of their distribution are compared. New biomorphological adaptations of these species under extreme conditions are described.     

Specific features of the growth of Scots pine vegetative organs in the forest-steppe zone of Cisbaikalia

The dependence of the annual increment of vegetative organs on air temperature and humidity and the amount of precipitation per phenophase, as well as the period of their growth in Scots pine, were studied in the forest-steppe zone of Cisbaikalia. The multiple effect of variation in environmental conditions on the annual increment of organs increased when precipitation in September of the previous year was taken into account. These factors proved to have a stronger effect on variation in the annual increment of needles (R ² = 0.59, p = 0.00005) than that in the annual ring width (R ² = 0.38, p = 0.0002).