Flows, droughts, and aliens: factors affecting the fish assemblage in a Sierra Nevada, California, stream

The fishes of Martis Creek, in the Sierra Nevada of California (USA), were sampled at four sites annually over 30 years, 1979-2008. This long-term data set was used to examine (1) the persistence and stability of the Martis Creek fish assemblage in the face of environmental stochasticity; (2) whether native and alien fishes responded differently to a natural hydrologic regime (e.g., timing and magnitude of high and low flows); and (3) the importance of various hydrologic and physical habitat variables in explaining the abundances of native and alien fish species through time. Our results showed that fish assemblages were persistent at all sample sites, but individual species exhibited marked interannual variability in density, biomass, and relative abundance. The density and biomass of native fishes generally declined over the period of study, whereas most alien species showed no significant long-term trends. Only alien rainbow trout increased in both density and biomass at all sites over time. Redundancy analysis identified three hydrologic variables (annual 7-day minimum discharge, maximum winter discharge, and number of distinct winter floods) and two habitat variables (percentage of pool habitat and percentage of gravel substrate) that each explained a significant portion of the annual variation in fish assemblage structure. For alien taxa, their proportional contribution to the total fish assemblage was inversely related to mean annual streamflow, one-day maximum discharge in both winter and spring, and the frequency of springtime floods. Results of this study highlight the need for continuous annual monitoring of streams with highly variable flow regimes to evaluate shifts in fish community structure. Apparent successes or failures in stream management may appear differently depending on the time series of available data.     

Feeding in a larval fish assemblage: the nutritional significance of an estuarine plume front

Gut fullness of larval fishes was used to determine the nutritional significance of an estuarine plume front off Botany Bay, SE Australia, on three days in March/April 1990. Fishes were captured in three different water masses (estuarine plume, front and shelf water), each separated by 200 m, using a 260 m mesh purse-seine net. Overall, the gut-fullness index (GFI) of 260 fish larvae combined from eight families (Gerreidae, Mugilidae, Mullidae, Sparidae, Blenniidae, Kyphosidae, Monodactylidae, Pomacentridae), was significantly greater in the plume and front water on two of the sampling occasions, but no difference was detected on the third occasion. Trends in GFI among families were inconsistent with respect to the front. The mugilid (Liza argentea) fed equally and abundantly in all water masses (gut fullness>90%), while the kyphosid (Kyphosus spp.) had a significantly greater GFI in the plume compared to the shelf water. In general, the response of GFI to the front varied between dates and amongst taxa. Diet analysis showed that mugilids selected for copepod nauplii within the plume and shelf water [alpha selectivity index (ASI) of (0.22 to 0.98)] and for harpacticoid copepods within the front (ASI=0.92), representing characteristic diets identified by canonical discriminant analysis. Kyphosids selected positively for copepod nauplii in all three water masses on both occasions (ASI>0.96). In general, diets of larval fish were taxon-specific, and responded variably to the three habitats. Comparison of diets across water masses was complicated by the large number of families, which rarely occurred in all water masses. The nutritional significance of an estuarine plume front varies between species of larval fish, and there are no obvious trends that can be applied to the larval fish community in general.     

Food resource partitioning in a Mediterranean demersal fish assemblage: the effect of body size and niche width

We investigated the effects of body size, feeding strategy and depth distribution on the trophic resource partitioning among the 26 dominant fish consumers in a fish assemblage on the central Mediterranean shelf-break. The fish assemblage was structured in two major trophic guilds: epibenthic and zooplanktonic feeders, according to the position of each predator along the benthos–plankton gradient. Within each main guild, the species were segregated along a prey-size or fish-size gradient into five further guilds. Fish size and prey size were strongly correlated, indicating that the prey-size niche can be well explained by predator size. Fish consumers showed a significant negative correlation between the similarity in prey type and the similarity in depth distribution; most species with similar trophic preferences segregated along the depth dimension. The only predators overlapping in both food and depth preferences were those with a more specialist trophic behavior. These results suggest that fish body size and depth preferences are the two main niche dimensions, explaining a large part of the coexistence between the Mediterranean shelf-break fish consumers.     

Integrating empirical and heuristic knowledge in a KBS to approach stream eutrophication

The nutrient enrichment of rivers and its consequences are among the most severe water quality problems in Europe, causing eutrophication and other problems. The decision-making processes involved in the management of these problems require extensive human expertise from people who deal directly with day-to-day stream problems, as well as empirical knowledge based on scientific research. This means that eutrophication is a complex problem, the optimal management of which requires an integrated and multidisciplinary approach. This approach can be taken using a Knowledge-Based System (KBS) built upon the concepts and methods of human reasoning. Accordingly, a KBS was developed within the STREAMES project. In this KBS most of the knowledge needed for managing eutrophication problems was organised and structured in the form of a decision tree (DT). The methodology specially developed to build this KBS, as well as the internal structure of the eutrophication decision tree, is presented here. The good DT obtained led to consider the KBS a suitable tool to support the management of eutrophication.     

Temporal patterns of settlement, recruitment and post-settlement losses in a rocky reef fish assemblage in the South-Western Mediterranean Sea

Post-settlement events can significantly alter the density distribution of settlers and subsequently the adult population structure. The temporal and inter-annual variability of settlement and the effects of mortality on recruitment were investigated across 2 years in the vicinities of Cabo de Palos–Islas Hormigas Marine Reserve by visual census and light trap sampling. Settlement was seasonal with greater species richness and abundance in summer. Although temporal synchronization was observed between larval supply and settlement, densities of settlers could not be predicted from post-larval abundances. Timing of settlement was consistent between years but with high inter-annual variation in abundance. High mortality (~80 %) and general decoupling between post-larval and settlement stages suggest that early mortality is driving such patterns. Nevertheless, indications of habitat-mediated mortality were found for benthic species such as Symphodus and Diplodus, highlighting the importance of habitat in shaping population demography.     

Surf-zone fish assemblages in south-western Australia: do adjacent nearshore habitats and the warm Leeuwin Current influence the characteristics of the fish fauna?

Nearshore fish faunas from 32 sites along 1500 km coastline of temperate south-western Australia were sampled by seine net between 1991 and 1992 to examine the species composition in sandy surf zones along this region, and to determine whether it is influenced by adjacent nearshore habitats and the warm southward flowing Leeuwin Current. Although the ichthyofauna was diverse, with 95 species from 47 families recorded, it was numerically dominated by only a few species. Species of Atherinidae, Mugilidae, Tetraodontidae, Clupeidae and Pomatomidae, such as Atherinomorus ogilbyi, Leptatherina presbyteroides, Mugil cephalus, Aldrichetta forsteri, Torquigener pleurogramma, Hyperlophus vittatus, Spratelloides robustus and Pomatomus saltatrix, were often common to these surf zones. When the species composition of the surf zones was compared with that found in adjacent nearshore habitats, 38 and 42% of the species were shared with reefs and seagrass beds, respectively, and 22% were present in all three habitats. Classification and ordination demonstrated that the faunal composition on the west coast was distinct from that on the south coast, and within each of these regions there were discrete assemblages. There was a marked decline in the number of species on the south coast, with 20 to 66 species reported from the six west-coast assemblages and 11 to 16 species collected from the four south-coast assemblages. A high proportion of resident species was found in the surf zones on both coasts; however, there was a smaller contribution of transient species on the south coast than on the west coast. This decline in transient species was associated with the absence of tropical species on the latter coast. Benthic invertevores were dominant on both coasts, while trophic diversity decreased and the proportion of zooplanktivores increased on the south coast. These differences in the characteristics of the fish fauna between the two coasts can be related to the presence of seagrass beds and limestone patch reef adjacent to sandy surf-zone areas on the west coast which provide more microhabitats for fish. The presence of inshore limestone reefs along the west coast moderates wave energy, producing more sheltered and temporally stable surf zones. The lower number of species on the south coast can also be attributed to the reduced influence of the Leeuwin Current. This southward flowing current acts as a mechanism for the dispersal of tropical species which display no regular association with the surf zones on the lower west coast.     

Hydrodynamic and chemical conditions during onset of a red-tide assemblage in an estuarine upwelling ecosystem

The hydrodynamics and nitrogen/silicon biogeochemistry accompanying the development of a red-tide assemblage were examined in the Ría de Vigo (northwest Spain), a coastal embayment affected by upwelling, during an in situ diel experiment in September 1991. Despite a low N:Si molar ratio (0.5) of nutrients entering the surface layer, which was favourable for diatom growth, the diatom population began to decline. Limited N-nutrient input, arising from moderate coastal upwelling in a stratified water column, restricted net community production (NCP = 630 mg C m⁻² d⁻¹). In addition, light-limitation of gross primary production (GPP = 1525 mg C m⁻² d⁻¹) was observed. The relatively high f-ratio (= NCP:GPP) recorded (0.41, characteristic of intense upwelling conditions) would have been as low as 0.15 had not GPP been limited by light intensity. Temporal separation of carbohydrate synthesis during the photoperiod from protein synthesis in the dark could be inferred from the time-course of the C:N ratio of particulate organic matter. Severe light-limitation would lead to diatom collapse were the diatoms not able to meet all their energy requirements during the hours of darkness. Under the hydrodynamic, nutrient and light conditions of the experiment, an assemblage of red-tide-forming species began to develop, aided by their ability to migrate vertically and to synthesize carbohydrates during the light in surface waters and protein during the dark at the 4 m-deep pycnocline. Thermal stratification, reduced turbulence, intense nutrient mineralization, and the limited nitrogen input through moderate upwelling were all favourable to the onset of a red-tide assemblage. Received: 15 February 1997 / Accepted: 26 September 1997     

The phenology of a Neotropical ant assemblage: evidence for continuous and overlapping reproduction

Reproductive phenologies reflect the interaction between the mating system of a taxon and the local environment. Ant colonies reproduce and disperse via the flights of winged alates. Few data exist on the reproductive phenologies of ant assemblages. Here we analyze the reproductive phenologies of 81 common ant species from 23,182 individuals collected over 3 years on Barro Colorado Island, Panama (BCI). Species ranged from highly synchronous to continuous fliers, but showed a median flight duration of at least 8 of 13 lunar months. In two statistical analyses (variance ratio test and Spearman rank correlations), 84% (16 of 19) of ant genera had species trending toward positively associated phenologies, more than expected by chance (P<0.00036 by a binomial test). Thus, there was little evidence for the hypothesis that competition for limiting resources staggers congeneric flights and ultimately promotes reproductive isolation. On the contrary, the timing of reproduction, and its synchrony, tended to be conserved within genera and subfamilies. These results closely match phenological studies of plant assemblages. The continuous reproduction and small colony size of many species in this study suggest that the female calling syndrome, a poorly documented mating system in ants, may be common on BCI.     

Embryogenesis of decapod crustaceans with different life history traits,feeding ecologies and habitats: a fatty acid approach

Variations in embryo size and fatty acid (FA) dynamics during embryogenesis were evaluated in deep-sea pandalids and portunid swimming crabs from the Portuguese continental margin and Madeira Island slope and compared with previous data on neritic and deep-sea lobsters and shrimps (collected between February 2001 and March 2004). Inter-specific variations in embryo size seem to be dictated primarily by phylogeny rather than by differences in reproductive or early life history traits. FA reserves were significantly correlated with embryo size (P < 0.001). Principal component analysis revealed differences among three groups (1—neritic caridean shrimps, 2—deep-sea pandalids of the genus Plesionika, and lobsters, 3—portunid crabs and the deep-sea pandalid Chlorotocus crassicornis, Costa 1871). Group 1 was clearly separated by PC1 mainly due to the higher percentage of essential C₁₈ (linoleic and linolenic acids) and C₂₀ (namely eicosapentaenoic) polyunsaturated FA (specific markers of primary producers). PC2 separated Group 2 from Group 3 due to differences in the percentage of several saturated FA (including odd-numbered FA—bacterial markers) and C₁₈ monounsaturated FA (namely 18:1n − 9, a general marker of carnivory). Therefore, these differences among groups seem to result from distinctions in diet and ecological niche. Intra-specific differences in FA composition between western and southern Plesionika martia martia (A. Milne-Edwards, 1883) populations may reflect higher water temperatures on the south sub-tropical coast. Lobster embryonic development was more demanding of lipid energy than that of the other decapod species, which may reflect an evolutionary trend in decapod taxa related to an increasing degree of lecithotrophy. However, a lower FA catabolism can be interpreted as an enhanced independence of the newly hatched larvae from external energy sources. Higher FA content at hatching and, as a consequence, a greater independence from the external environment should increase the chances of larval survival. Electronic supplementary material Supplementary material is available in the online version of this article at and is accessible for authorized users.     

Projected vegetation changes for the American Southwest: combined dynamic modeling and bioclimatic-envelope approach

This study focuses on potential impacts of 21st century climate change on vegetation in the Southwest United States, based on debiased and interpolated climate projections from 17 global climate models used in the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Among these models a warming trend is universal, but projected changes in precipitation vary in sign and magnitude. Two independent methods are applied: a dynamic global vegetation model to assess changes in plant functional types and bioclimatic envelope modeling to assess changes in individual tree and shrub species and biodiversity. The former approach investigates broad responses of plant functional types to climate change, while considering competition, disturbances, and carbon fertilization, while the latter approach focuses on the response of individual plant species, and net biodiversity, to climate change. The dynamic model simulates a region-wide reduction in vegetation cover during the 21st century, with a partial replacement of evergreen trees with grasses in the mountains of Colorado and Utah, except at the highest elevations, where tree cover increases. Across southern Arizona, central New Mexico, and eastern Colorado, grass cover declines, in some cases abruptly. Due to the prevalent warming trend among all 17 climate models, vegetation cover declines in the 21st century, with the greatest vegetation losses associated with models that project a drying trend. The inclusion of the carbon fertilization effect largely ameliorates the projected vegetation loss. Based on bioclimatic envelope modeling for the 21st century, the number of tree and shrub species that are expected to experience robust declines in range likely outweighs the number of species that are expected to expand in range. Dramatic shifts in plant species richness are projected, with declines in the high-elevation evergreen forests, increases in the eastern New Mexico prairies, and a northward shift of the Sonoran Desert biodiversity maximum.     

Identification of ecologically significant habitats for urban nature conservation: a case study in Turkey

Given the rapid urbanization of Turkey, sustained productivity of natural resources should be an integral part of any urban development policy. The biogeochemical cycles and ecosystem services link urban and rural ecosystems. It is, therefore, essential that ecologically significant habitats along urban-rural continuum be protected to secure public and environmental health. This necessitates their identification and the establishment of administrative and legal foundations for urban nature conservation in the management of urban habitats, should be established Ecological analysis of urban habitats of Kar?iyaka led to the identification of 19 ecologically significant habitats. Nature conservation priority was rated, using rarity, species richness, stratification, site age, and area of the habitats. Ecologically significant habitats made up about 54 ha of the total urban green space of 289 ha in Kar?iyaka. The total number of plant species was estimated to be 273.     

Trophic ecology of the stomiid (Pisces: Stomiidae) fish assemblage of the eastern Gulf of Mexico: Strategies,selectivity and impact of a top mesopelagic predator group

The trophic ecology of the stomiid assemblage (Pisces, Stomiiformes, Stomiidae) in the eastern Gulf of Mexico, a region with physical and biological characteristics typical of oligotrophic low-latitude regimes, was investigated. Over 1400 specimens representing 69 species and 17 genera were examined. Four patterns of feeding were evident among the abundant stomiids: (1) myctophid predation; (2) zooplankton/small micronekton predation; (3) penaeidean shrimp predation; and (4) copepod/micronekton predation. One rare species preyed on cephalopods. Il was concluded that stomiids exhibited a high level of prey-selectivity, particularly considering the broad range of prey types available in the eastern Gulf of Mexico. The absence of numerically dominant potential prey (e.g.Cyclothone spp., sternoptychids) in the diets of piscivorous stomiids is possibly a function of feeding periodicity coupled with stomiid vertical migration. Stomiids may feed at night in the upper 200 m on vertically migrating myctophids while disregarding co-occurring nonmigrating prey during the daytime. Integration of stomiid abundance and diet data suggests that: (1) stomiids are the dominant upper trophic-level predators of the Gulf of Mexico mesopelagial, (2) stomiids inflict the highest predation impact on myctophids in low-latitude midwater ecosystems, and (3) the historic use of predation-avoidance arguments to explain certain mesopelagic phenomena (e.g. vertical migration, ventral photophores) appears to be substantiated by estimates of stomiid predation-impact. The stomiids may serve as key trophic mediators in the transfer of energy from the mesopelagial to the bathyand benthopelagial.     

Landscape history, fragmentation, and patch occupancy: models for a forest bird with limited dispersal.

We developed and tested patch occupancy models for an endemic understory bird with limited dispersal ability, the Chucao Tapaculo (Scelorchilus rubecula), in two South American temperate rain forest landscapes that differed in levels and duration of forest loss. We assessed cover changes since 1961 in each landscape and surveyed patches for Chucao Tapaculo occupancy. We then developed incidence-based predictive models independently for each landscape and tested each model reciprocally in the alternative study area. We thereby assessed the domain of model applicability and identified those predictor variables with general effects and those that varied between the two landscapes. The two models were consistent regarding variable selection, and predictive accuracy of each model was high in the landscape where training data were collected. However, the models differed substantially in the magnitudes of effects related to patch size, with larger unoccupied patches observed in the landscape with the more advanced stage of fragmentation. Due to this discrepancy, each model performed poorly when applied to the alternative landscape, potentially reflecting the contrasting stages of habitat loss. Although it was impossible to dissociate effects of level and duration of forest loss, we viewed the landscapes as representing two extremes along a continuum of fragmentation, providing insights into potential trajectories for portions of the biome where deforestation is occurring. Further, our data suggest that static equilibrium models developed from distribution patterns in recently fragmented landscapes may overestimate persistence when used as a forecasting tool, or when extrapolated to alternative landscapes where fragmentation is more advanced. Thus, we suggest that landscapes used as standards for model building should be selected with caution. We recommend that distribution patterns be obtained from landscapes where fragmentation is advanced, preferably with histories of fragmentation long enough that time-delayed extinctions already would have occurred.     

Predator evasion in a fish school: test of a model for the fountain effect

A model to explain the behavioural mechanisms underlying the fountain manoeuvre, a predator-evasion response shown by fish shoals is tested. It is proposed that the responses of individual fish are constrained by requirements to (1) visually monitor the predator's behaviour, (2) minimise the energetic cost of escape, and (3) maximise the rate of passage around the predator. The model predicts that individuals will swim away from the threat at a constant angle determined by the rear limit of the visual field and that the range of reaction will be constrained by water visibility. The model's predictions were upheld in tests conducted in 1984 using a shoal of juvenile whiting, Merlangius merlangus (L.). It is concluded that the principal determinant of the fountain manoeuvre is the visual field of the fish.     

Sex-specific conditional mating preferences in a cichlid fish: implications for sexual conflict

Conditional mating strategies enable individuals to modulate their mating behaviour depending on ‘individual status’ to maximise fitness. Theory predicts that variation in individual quality can lead to differences in mating preferences. However, empirical evidence is scarce particular in terms of variation in male and female strategies. Here, we experimentally investigated quality-dependent variation in mating preferences concerning reliable quality indicators in Pelvicachromis taeniatus, a colourful cichlid fish with mutual mate choice and ornamentation. Males as well as females were artificially manipulated in phenotypic quality by different feeding regimes. Ornamentation was connected to individual quality in both sexes. Males and females showed conditional mating strategies in different directions. Males showed prudent choice by preferring females of similar quality. In contrast to males, low-quality females preferred highly ornamented males, whereas high-quality females showed neither preferences for high- nor for low-quality males. The results suggest that individuals aim for specific benefits depending on individual quality. Furthermore, the conflicting conditional mating preferences of males and females might lead to sexual conflict, implicating a highly dynamical mating system that evolves even in absence of environmental changes.     

Linking male qualities to multiple display traits: an example in a fish with exclusive male care

Recent theoretical models predict that the relative allocation to advertisement and parental care depends on whether paternal care is necessary for offspring survival: In species with exclusive male care, male investment in attraction is expected to reliably indicate paternal care effort and male phenotypic quality. Previous research, yielding contrasting results, has considered how one trait involved in mate attraction interacts with parental care or a specific aspect of male quality. In the blenny Salaria pavo, we perform a comprehensive analysis of the interplay between overall male attractiveness and male quality, the latter in terms of fertility, condition, and parental care. In this fish, males are larger than females, exhibit two sexually dimorphic traits (head crest and anal glands), and solely care for eggs. We generated a male attractiveness index through principal component analyses of morphological traits and quantified parental effort as the total time spent in egg care. In addition, we analyzed the relationships between specific components of attractiveness and male qualities. In agreement with theory predictions, we found that male overall attractiveness is a reliable indicator of fertility, in terms of sperm number, but is unrelated to body condition and parental care effort, with males able to perform high levels of care regardless of their level of advertisement. However, the relative expression of head crest area appears positively related to sperm number but is traded-off with parental care effort. These findings underline the need, in addressing real patterns, to consider interactions between multiple aspects of male display and quality.     

The Baltic Sea spring phytoplankton bloom in a changing climate: an experimental approach

The response of the Baltic Sea spring bloom was studied in mesocosm experiments, where temperatures were elevated up to 6°C above the present-day sea surface temperature of the spring bloom season. Four of the seven experiments were carried out at different light levels (32–202?Wh?m^?2 at the start of the experiments) in the different experimental years. In one further experiment, the factors light and temperature were crossed, and in one experiment, the factors density of overwintering zooplankton and temperature were crossed. Overall, there was a slight temporal acceleration of the phytoplankton spring bloom, a decline of peak biomass and a decline of mean cell size with warming. The temperature influence on phytoplankton bloom timing, biomass and size structure was qualitatively highly robust across experiments. The dependence of timing, biomass, and size structure on initial conditions was tested by multiple regression analysis of the y-temperature regressions with the candidate independent variables initial light, initial phytoplankton biomass, initial microzooplankton biomass, and initial mesozooplankton (=copepod) biomass. The bloom timing predicted for mean temperatures (5.28°C) depended on light. The peak biomass showed a strong positive dependence on light and a weaker negative dependence on initial copepod density. Mean phytoplankton cell size predicted for the mean temperature responded positively to light and negatively to copepod density. The anticipated mismatch between phytoplankton supply and food demand by newly hatched copepod nauplii occurred only under the combination of low light and warm temperatures. The analysis presented here confirms earlier conclusions about temperature responses that are based on subsets of our experimental series. However, only the comprehensive analysis across all experiments highlights the importance of the factor light.     

Sensory ecology in a changing world: salinity alters conspecific recognition in an amphidromous fish, Pseudomugil signifer

Group fission and fusion processes are driven by state dependence, risk and the availability of information from others. Yet the availability of information changes under different environmental conditions, thus aiding or inhibiting group formation and maintenance. Chemical cues provide information on the location of individuals and can act as a mechanism for individuals to group together, although they can be greatly affected by environmental conditions. Using a flow channel, we studied how one shoaling fish species, the Pacific blue-eye (Pseudomugil signifer), responds to conspecific chemical cues (CCCs) in different environmental conditions (salinities). This species lives in estuarine environments, ranging in salinity from fresh to fully marine. P. signifer responded to CCCs in freshwater but not in saltwater. Furthermore, P. signifer did not respond to saltwater with CCCs added from freshwater. It took significantly longer for fish in saltwater, than in freshwater, to locate and join a shoal when only CCCs from the shoal were present. Finally, fish formed more cohesive shoals in freshwater than in brackish or saltwater. These results suggest that these fish do not rely on chemical cues in saltwater to locate conspecific shoals. Furthermore, the reduced amounts of these cues in saltwater may inhibit the maintenance of tight shoal structures. We suggest that fish utilise different sensory modalities in fresh or saltwater in order to locate one another, or the social structure of these groups is fundamentally different between these two water types. The importance of this study in relation to understanding how animals utilise and change different sensory modalities in varying environmental conditions is discussed.