Estimates of vital rates for a declining loggerhead turtle (Caretta caretta) subpopulation: implications for management

Because subpopulations can differ geographically, genetically and/or phenotypically, using data from one subpopulation to derive vital rates for another, while often unavoidable, is not optimal. We used a two-state open robust design model to analyze a 14-year dataset (1998–2011) from the St. Joseph Peninsula, Florida (USA; 29.748°, ?85.400°) which is the densest loggerhead (Caretta caretta) nesting beach in the Northern Gulf of Mexico subpopulation. For these analyses, 433 individuals were marked of which only 7.2 % were observed re-nesting in the study area in subsequent years during the study period. Survival was estimated at 0.86 and is among the highest estimates for all subpopulations in the Northwest Atlantic population. The robust model estimated a nesting assemblage size that ranged from 32 to 230 individuals each year with an annual average of 110. The model estimates indicated an overall population decline of 17 %. The results presented here for this nesting group represent the first estimates for this subpopulation. These data provide managers with information specific to this subpopulation that can be used to develop recovery plans and conduct subpopulation-specific modeling exercises explicit to the challenges faced by turtles nesting in this region.     

Stable isotope variation in the northern Gulf of Mexico constrains bottlenose dolphin (Tursiops truncatus) foraging ranges

Site-specific differences were found in consumer isotope values among ten sites examined in the northern Gulf of Mexico. Average δ¹³C values among sites ranged ?21.7 to ?15.7 ‰, δ¹⁵N ranged <3 ‰: from 9.8 to 11.5 ‰, and δ³⁴S ranged from 5.9 to 18.3 ‰. Isotope variation among these sites provided insight into the ranging habits of bottlenose dolphins (Tursiops truncatus) sampled in St. George Sound (29.8N, 84.6W), a nearshore seagrass habitat, during May of 2005. Isotope comparisons suggest that the majority of dolphins sampled (average ± one standard deviation: δ¹³C = ?17.5 ± 0.8, δ¹⁵N = 14.5 ± 0.9, and δ³⁴S = 10.6 ± 1.5) did not forage significantly on offshore species which are significantly ³⁴S-enriched, nor is it likely that they ranged either eastward or westward along the coast within the sampling region. Despite their capability for ranging, these dolphins occupied a restricted home range, during the spring before our sampling efforts. These results demonstrate significant fine-scale isotope variation among coastal habitats explained by differences in freshwater inputs, organic matter loading, and modes of primary production that may be used to constrain the foraging ranges of a highly mobile apex predator.     

Prey selection by resident common bottlenose dolphins (tursiops truncatus) in Sarasota Bay, Florida

Prey selection was investigated in wild, resident common bottlenose dolphins, Tursiops truncatus, during the summer months in Sarasota Bay, Florida, USA. Stomach content analyses of 15 dolphins with extensive sighting histories and well-documented distributions were used to determine prey use. Prey availability was assessed by purse seine surveys. We compared the relative abundances of prey available to estimates of prey use at closely matching spatial and temporal scales. G-tests determined that dolphins in this study significantly selected for prey at the species, family, and soniferous/non-soniferous prey levels (G _adj  = 753.98–1,775.93, df = 1–21, p ≤ 0.01). While comprising only 6.3% of the total available prey, soniferous fishes accounted for 51.9% of the total prey consumed. Manly’s standardized forage ratios and 95% Bonferroni confidence intervals determined significant positive selection for soniferous prey and against non-soniferous prey (β^S = 0.9461 vs. β^NS = 0.0539). Dolphins selected against Gerridae, Clupeidae, and Sparidae (β ≤ 0.0014), as well as against all the species within those families (β ≤ 0.0190). It is likely that passive listening for soniferous prey provides an ecological or energetic advantage to cetaceans utilizing this specific foraging technique.     

Mesocosm and in situ observations of the burrowing shrimp Calocaris templemani (Decapoda: Thalassinidea) and its bioturbation activities in soft sediments of the Laurentian Trough

In vivo observations in laboratory mesocosms and aquaria, accompanied with in situ photographic surveys, have shown that the burrowing shrimp Calocaris templemani has a significant impact on bottom sediment dynamics and geochemistry in the St. Lawrence Estuary. This burrowing shrimp establishes and maintains complex semi-permanent burrows made up of several interconnected, ‘U-shaped’ galleries with generally four or more openings to the sediment surface. In the Estuary, at 345 m depth, Calocaris average density was estimated at 3.4 individuals m^?2. Observed individual burrows reached a maximum volume of 0.54 L. C. templemani displaces this volume of mostly anoxic sediments from the subsurface layers (down to 15 cm) to the sediment surface, thereby obscuring some of the natural stratification patterns. With an estimated turnover rate of about 8 L m^?2 year^?1 of sediment, our calculations suggest that over a period of about 18.75 years, all the sediment to a depth of 15 cm will have been reworked by C. templemani alone.     

Molecular insight into the population structure of common and spotted dolphins inhabiting the pelagic waters of the Northeast Atlantic

Several cetacean species exhibit fine-scale population structure despite their high dispersal capacities and the apparent continuity of the marine environment. In dolphins, most studies have focused on coastal areas and continental margins, and they revealed differentiated populations within relatively small geographic areas, sometimes in conjunction with a specialisation for different habitats (ecotypes). We analysed the population genetic structure of short-beaked common dolphins (Delphinus delphis) and Atlantic spotted dolphins (Stenella frontalis) in the Azores and Madeira, the two most isolated archipelagos of the North Atlantic. The archipelago of the Azores is divided into three groups of islands and stands 900 km away from Madeira. It is not known whether individuals migrate between groups of islands and archipelagos, nor whether distinct ecotypes are present. These questions were investigated by genetic analyses of 343 biopsy samples collected on free-ranging dolphins. The analyses consisted in sequencing part of the mitochondrial hyper-variable region, screening up to 14 microsatellite loci, and molecular sexing. Results did not unravel any population structure at the scale of the study area. Lack of differentiation matches expectations for spotted dolphins, which are transient in both archipelagos, but not for common dolphins, which are present year-round in the Azores and potentially resident. Absence of genetic structure over hundreds and even thousands of kilometres implies the existence of gene flow over much larger distances than usually documented in small delphinids, which could be achieved through individual movements. This finding indicates that population structure in oceanic habitat differs from that observed in coastal habitat.     

Genetic diversity and relatedness of the mangrove Rhizophora mangle L. (Rhizophoraceae) using amplified fragment polymorphism (AFLP) among locations in Florida, USA and the Caribbean

Rhizophora mangle L. is a widespread mangrove species in the Western Hemisphere. Mangrove habitat loss and their importance to coastal and reef ecosystems make greater understanding of their genetic structure useful for conservation and management. An amplified fragment polymorphism (AFLP) analysis was performed on samples from Florida and the Caribbean to discover the genetic structure present. R. mangle had variable genetic diversity not related to latitude; P ranged 7 %–92 %. Some other factor, perhaps human impact, has caused low genetic diversity in some populations. Across Florida R. mangle populations varied in genetic diversity with less diversity (G_st?=?0.195) and greater gene flow on the Atlantic coast (Nm =2.07) than on the Gulf coast (G_st?=?0.717, Nm?=?0.197). Gene flow between Caribbean islands was low (Nm?=?0.386) compared to continental populations (Nm?=?1.40), indicating that long distance dispersal is not common between islands. Analysis of molecular variance (AMOVA) analysis showed significant deviations from Hardy-Weinberg expectations at the level of region among subpopulations and overall genetic difference among subpopulations for R. mangle. One implication for management is that small continental populations and island populations may be genetically isolated and distinct from each other.     

Winter diet shift of long-beaked common dolphins (Delphinus capensis) feeding in the sardine run off KwaZulu-Natal, South Africa

Unpredictable inter-annual variations in the timing, spatial extent and intensity of the sardine run (Sardinops sagax) have been documented in recent years along the coastline of KwaZulu-Natal, South Africa. This study aimed to determine whether variations in the availability of sardine were reflected in the diet and condition of common dolphins (Delphinus capensis) over the past three decades. Stomach contents from 95 common dolphins incidentally caught between 2000 and 2009 were analysed and compared to historical data collected between 1972 and 1992. A shift in the principal prey species consumed by the dolphins was observed over the past 30 years. Prior to 1992, sardine comprised up to 49 % of the total stomach contents by mass, whilst chub mackerel (Scomber japonicus) was the dominant prey recorded in the stomach contents between 2000 and 2009 (66 %). As common dolphins prey on locally abundant fish species, this dietary shift may indicate changes in the availability of the most abundant fish prey. Stable isotope analyses of tooth tissue revealed no significant changes in the δ¹⁵N and δ¹³C isotopic ratios over the past three decades (P = 0.283 for N and P = 0.922 for C). Blubber thickness as a percentage of body length and blubber weight as a percentage of total body weight were assessed as indicators of animal condition. No significant changes in proportional blubber weight or blubber thickness were seen over the last 40 years (1970–2009) for all age cohorts. This species appears to be well adapted to cope with changes in prey species availability, without impacting on body condition.     

The foraging ecology of coastal bottlenose dolphins based on stable isotope mixing models and behavioural sampling

Understanding trophic interactions is critical for elucidating ecological roles of marine predators. We used behavioural observations and stable isotope mixing models to investigate the feeding ecology of Indo-Pacific bottlenose dolphins (Tursiops aduncus) in the lagoon of Mayotte (East Africa). We identified prey during 77 % of 54 observed feeding events, observed in both rainy (61 % of events) and dry (39 %) seasons. Caranx melampygus and Gnathanodon speciosus were involved in 67 % of these events, with Tylosurus crocodilus (20 %) and Mugil cephalus (13 %) also consumed. Mixing models, based on δ¹³C and δ¹⁵N values of skin and blubber (n = 30 samples for both tissues), suggest that behavioural observations are representative of general feeding patterns. Indeed, C. melampygus and T. crocodilus (G. speciosus could not be included in models) were estimated to contribute most to dolphin diets, with mean estimated contributions of 44.6 % (±18.9) and 48.1 % (±19.1) for skin and 73.7 % (±14.9) and 16.9 % (±12.4) for blubber, respectively. Our results highlight the value of two independent methods (stable isotopes and behavioural observations) to assess prey preferences of free-ranging dolphins.     

Insulative capacity of the integument of the dugong (Dugong dugon): thermal conductivity,conductance and resistance measured by in vitro heat flux

Extant sirenians are restricted to warm waters, presumably due to their low metabolism and poor thermoregulatory capacity, including thin blubber. When subjected to winter waters, Florida manatees (Trichechus manatus latirostris) migrate to warm areas, but dugongs (Dugong dugon) do not and instead live year-round in winter waters as cool as 15–18 °C. Dugongs appear to be more active than manatees and may have higher metabolic rates, but little is known about thermal energetics or the insulative properties of their integument. This study investigated the physical and thermal properties of whole samples of dugong integument, i.e. epidermis, dermis and hypodermis (blubber) sampled from fresh dugong carcasses collected from 2004 to 2012 in Moreton Bay (27.21°S, 153.25°E). Physico-chemical properties (thickness, density and lipid content) of each component tissue layer were measured. Thermal conductance (C) and conductivity (k) were measured for each tissue layer through in vitro temperature flux experiments within an insulated chamber. C and k were higher for dermis (25.7 ± 1.2 W m^?2 K^?1, 0.43 ± 0.02 W m^?1 K^?1, respectively, n = 21) than blubber (24.3 ± 2.4 W m^?2 K^?1, 0.31 ± 0.01 W m^?1 K^?1, n = 21), suggesting that blubber, with higher density and lipid content, affords better insulation. However, because the dermis contributes 65 % of integumentary thickness, both layers contribute significantly to insulation. The integument of dugongs is a poorer insulator compared to many cold-water marine mammals, but the greater thickness of its dermal layer means that despite its relatively thin blubber, its integumentary insulation is similar to warm-water dolphins of similar body size.     

Investigating stock structure and trophic relationships among island-associated dolphins in the oceanic waters of the North Atlantic using fatty acid and stable isotope analyses

Short-beaked common dolphins (Delphinus delphis) and Atlantic spotted dolphins (Stenella frontalis) are the two most abundant cetacean species in the oceanic waters of Madeira and the Azores. They are of similar size, occur in similar habitats and are regularly observed in mixed-species groups to forage together. Genetic analyses suggested that, within each species, dolphins ranging around both archipelagos belong to the same panmictic population. We tested the hypotheses that (1) within each species, individuals from the two archipelagos belong to a single ecological stock; (2) between species, common and spotted dolphins have distinct trophic niches; using fatty acid (FA) and stable isotope (SI) analyses. Fatty acids and stable isotopes were analysed from 86 blubber and 150 skin samples of free-ranging dolphins, respectively. Sex-related differences were not significant, except for common dolphin FA profiles. In S. frontalis, FA and SI differences between archipelagos suggested that individuals belonged to different ecological stocks, despite the existence of gene flow between the two archipelagos. In D. delphis, differences were more pronounced, but it was not possible to distinguish between stock structure and a seasonal effect, due to differential sampling periods in the Azores and Madeira. Inter-specific comparisons were restricted to the Azores where all samples were collected during summer. Differences in FA proportions, noticeably for FA of dietary origin, as well as in nitrogen SI profiles, confirmed that both species feed on distinct resources. This study emphasizes the need for an integrated approach including both genetic and biochemical analyses for stock assessment, especially in wide-ranging marine top predators.     

Survival and remigration probabilities for loggerhead turtles (Caretta caretta) nesting in the eastern Gulf of Mexico

Few long-term mark-recapture tagging datasets exist to estimate population parameters for loggerhead sea turtle (Caretta caretta) recovery units. Using a two-state open robust design model, we analyzed a 20-year (1990–2009) mark-recapture dataset from the Keewaydin Island loggerhead nesting assemblage off the southwest coast of Florida (USA) in the eastern Gulf of Mexico. For this analysis, 2,292 turtle encounters were evaluated, representing 841 individual nesting turtles. Survival was estimated at 0.73 (95 % CI 0.69–0.76). This estimate is comparable with survival estimates elsewhere in the Peninsular Florida subpopulation and is among the lowest estimates for the Northwest Atlantic loggerhead population. We documented no changes in remigration rates or clutch frequency over time. These are the first survival and remigration probabilities estimated for a loggerhead nesting assemblage in the eastern Gulf of Mexico.     

Pregnancy patterns of pantropical spotted dolphins (Stenella attenuata) in the eastern tropical Pacific determined from hormonal analysis of blubber biopsies and correlations with the purse-seine tuna fishery

The northeastern offshore population of the pantropical spotted dolphin (Stenella attenuata) in the eastern tropical Pacific remains listed as depleted under the Marine Mammal Protection Act, and recent estimates of abundance show that recovery has been slow. One hypothesis for the slow recovery is that continued chase and encirclement by the tuna fishery negatively affects reproduction. Insufficient life-history sampling in this region over the last two decades makes traditional estimates of reproductive rates impossible. Here, we examine the current reproductive patterns of these dolphins by measuring blubber progesterone (BP) concentrations in biopsy samples to assess pregnancy state. BP was quantified in 212 biopsies from female offshore spotted dolphins sampled between 1998 and 2003 in the northeastern tropical Pacific, and we found that 11.5 % of the biopsied females (mature and immature) were pregnant. The relationship between pregnancy and fishery exposure was analyzed, and we found that pregnant females were exposed to significantly less fishery activity than non-pregnant ones (p = 0.022), suggesting that the fishery may have an inhibitive effect on pregnancy. Spatial analysis indicated that pregnancy was more aggregated than random (p < 0.05) at a scale up to 180-nmi, with the highest proportion pregnant in the mouth of the Gulf of California, an area with relatively low reported fishery activity.     

Tidal influences on the habitat use of Indo-Pacific humpback dolphins in an estuary

This paper offers the first study of diurnal variations in the use of an estuarine habitat by Indo-Pacific humpback dolphins. Passive acoustic data loggers were deployed in the Xin Huwei River Estuary, Western Taiwan, from July 2009 to December 2010, to collect biosonar clicks. Acoustic encounter rates of humpback dolphins on the riverside of the estuary changed significantly over the four tidal phases, instead of the two diurnal phases based on the recordings from 268 days. Among the tidal phases, the encounter rates were lowest during ebb tides. Additionally, circling movements associated with the hunt for epipelagic fish significantly changed in temporal and spatial presence over the four tidal phases, matching the overall pattern of encounter rate changes in the focal estuary. Our findings suggest that the occurrence pattern and habitat utilization of humpback dolphins are likely to be influenced by the tidal-driven activity of their epipelagic prey.     

Migratory activity by hatchling loggerhead sea turtles (Caretta caretta L.): evidence for divergence between nesting groups

The South Florida subpopulation of loggerhead sea turtles (Caretta caretta L.) nests with great fidelity on either the southeast or the southwest coast of Florida, USA. The hatchlings that emerge from those nests must swim in opposite directions and search for different surface currents to migrate away from continental shelf waters. In this laboratory study, we compared the pattern of swimming activity shown by the hatchlings from each coast over the first 6 days of migration. Turtles from both coasts were equally active during their “frenzy” period (the first 24 h of swimming) and during the daylight hours of the 5 days that followed (the “postfrenzy” period). However, the west coast turtles were significantly more active than the east coast turtles during the nocturnal portion of the postfrenzy period. This difference may be related to the greater distance southwest coast turtles must negotiate to locate surface currents for transport out of the Gulf of Mexico and into the Atlantic Ocean basin. These differing behavioral strategies may be genetically determined, as similar correspondence between activity and distance is well known among migratory populations of birds and fish and is often based upon inherited programs of endogenously driven activity. Alternatively, behavioral differences between the two nesting groups could be a manifestation of phenotypic plasticity that arises as the hatchlings respond to unique environmental cues on each coast.     

Habitat selection in a coastal dolphin species (<Emphasis Type="Italic">Cephalorhynchus hectori</Emphasis>)

Hector's dolphin ( Cephalorhynchus hectori) is a small New Zealand delphinid with a coastal distribution. Within a strip of 1 km from shore, the present study quantified the habitat used by the dolphins ( n=461 groups) over a 19-month period (216 field days with 966 survey hours) by recording the abiotic factors sea surface temperature (SST), water depth and water clarity. Resource selection functions were used to distinguish the properties of 461 "used" sites (dolphins present) from 425 "unused" sites (no dolphins present) in six different study areas. Most dolphins were encountered in waters <39 m depth, with <4 m Secchi disk visibility and >14°C temperature. The preference of Hector's dolphins for warm and turbid waters was tested using eight models. Water depth, water clarity, SST and the study area explained dolphin presence to a very significant degree ( p<0.001), and the model allowed the creation of probability plots for a variety of combinations of the variables. Habitat selection by dolphins differed between study areas, particularly between east and west coasts, in summer (December–February) and winter (June–August). Dolphin abundance appeared to change seasonally in some study areas, possibly due to a more offshore distribution of their prey in the winter, with its lower SSTs. This was so especially in summer (the main reproductive season), when dolphins (frequently with calves) occupied shallow and turbid waters, whereas in winter less use was made of this habitat.     

Signature whistles of free-ranging bottlenose dolphins Tursiops truncatus: stability and mother-offspring comparisons

Summary Mother-calf whistle exchanges were recorded from temporarily captured free-ranging bottlenose dolphins from 1975 to 1989. This is part of a long-term research project studying social structure and behavior of a community of approximately 100 dolphins in waters near Sarasota, Florida. Analysis of whistle exchanges from 12 mothercalf pairs shows that signature whistles can remain stable for periods up to at least 12 years. We looked for effects of vocal learning on the development of the signature whistle by comparing whistles of calves to those of their mothers. Eight female calves produced whistles distinct from those of their mothers, while four male calves produced whistles similar to those of their mothers. Male calves appeared to produce a greater proportion of whistles other than the signature whistle (termed variants). We hypothesize that these sex differences in whistle vocalizations may reflect differences in the roles males and females play in the social structure of the community.     

Assimilation of Fenthion in Coastal Water

Fenthion [O.O-dimethyl 0-3-methy1-4(methylthio) phenyl phosphorothioate] is one of the most used mosquito insecticides in Florida, USA. Aerially applied insecticides may accidentally drift into estuarine coastal water and affect non-target organisms (Johnson and Finley, 1980; Kenaga, 1979; Patterson and Von Windeguth, 1964; Ray and Stevens, 1970). A field spray and a laboratory study were conducted to determine the persistence and disappearance rates of fenthion in the water and its toxicity on non-target organisms. This paper summarizes the results of the study and determines the assimilation capacity of fenthion in coastal waters. The fenthion is often applied as a thermal fog by a DC-3 aircraft. The thermal fog mixture contains 1.5% fenthion, 33.5% fog oil and 65% No. 2 diesel fuel. The spray duration was one to two minutes as the plane made its swath directly over the target site. The field spray was in St. Lucie County Impoundment on the east coast of Florida, USA. Before and after the spray, water samples were collected at different time intervals up to 48 hours to determine the fenthion concentration and their disappearance rates in the coastal water (Wang et al., 1987).     

Multi-year, seasonal genotypic surveys of coral-algal symbioses reveal prevalent stability or post-bleaching reversion

This report documents the extent to which coral colonies show fluctuations in their associations with different endosymbiotic dinoflagellates. The genetic identity of Symbiodinium from six coral species [Acropora palmata (Lamarck), A. cervicornis (Lamarck), Siderastrea siderea (Ellis and Solander), Montastrea faveolata (Ellis and Solander), M. annularis (Ellis and Solander), and M. franksi (Gregory)] was examined seasonally over five years (1998 and 2000–2004) in the Bahamas and Florida Keys at shallow (1 to 4 m) fore-reef/patch reef sites and at deeper fore-reef (12–15 m) locations. Symbionts were identified genetically using denaturing gradient gel electrophoresis (DGGE) fingerprinting of the internal transcribed spacer region 2 (ITS2) of ribosomal RNA gene loci. Repetitive sampling from most labeled colonies from the Bahamas and the Florida Keys showed little to no change in their dominant symbiont. In contrast, certain colonies of M. annularis and M. franksi from the Florida Keys exhibited shifts in their associations attributed to recovery from the stresses of the 1997–1998 El Niño southern oscillation (ENSO) event. Over several years, a putatively stress-tolerant clade D type of Symbiodinium was progressively replaced in these colonies by symbionts typically found in M. annularis and M. franksi in Florida and at other Caribbean locations. Greater environmental fluctuations in Florida may explain the observed changes among some of the symbioses. Furthermore, symbiotic associations were more heterogeneous at shallow sites, relative to deep sites. The exposure to greater environmental variability near the surface may explain the higher symbiont diversity found within and between host colonies.     

Assimilation of Fenthion in Coastal Water

Fenthion [O.O-dimethyl 0-3-methy1-4(methylthio) phenyl phosphorothioate] is one of the most used mosquito insecticides in Florida, USA. Aerially applied insecticides may accidentally drift into estuarine coastal water and affect non-target organisms (Johnson and Finley, 1980; Kenaga, 1979; Patterson and Von Windeguth, 1964; Ray and Stevens, 1970). A field spray and a laboratory study were conducted to determine the persistence and disappearance rates of fenthion in the water and its toxicity on non-target organisms. This paper summarizes the results of the study and determines the assimilation capacity of fenthion in coastal waters. The fenthion is often applied as a thermal fog by a DC-3 aircraft. The thermal fog mixture contains 1.5% fenthion, 33.5% fog oil and 65% No. 2 diesel fuel. The spray duration was one to two minutes as the plane made its swath directly over the target site. The field spray was in St. Lucie County Impoundment on the east coast of Florida, USA. Before and after the spray, water samples were collected at different time intervals up to 48 hours to determine the fenthion concentration and their disappearance rates in the coastal water (Wang et al., 1987).     

Lionfish alter benthic invertebrate assemblages in patch habitats of a subtropical estuary

Invasive lionfish (primarily Pterois volitans) have spread throughout the Caribbean region, Gulf of Mexico, and the Southeast US coast, and resulting impacts on reef fish populations have been well documented. We examined whether lionfish can likewise affect benthic invertebrate communities, using an in situ caging experiment, in the Loxahatchee Estuary, Florida, USA. We found that lionfish caused significant declines in the three most abundant benthic invertebrate species, driving an overall shift in assemblage composition. For example, grass shrimp (Palaemonidae) abundance was reduced by nearly 90 % in the presence of lionfish. Species richness of benthic organisms was significantly higher when lionfish were present, suggesting potentially complex emergent effects of lionfish predation on benthic assemblages. Despite the fact that this experiment was conducted in just a single location using relatively small experimental units, we show altered benthic invertebrate communities could well be an additional outcome of the lionfish invasion.