两种龟类Sox基因的PCR扩增及SSCP分析的研究

采用ＰＣＲ技术,扩增了平胸龟、黄缘盒龟的Ｓｏｘ基因,扩增产物与人ｐＹ５３．３ＳＲＹ基因探针进行Ｓｏｕｔｈｅｒｎ杂交,证实了扩增产物是人ＳＲＹ基因的同源片段;采用ＳＣＰ分析技术,显示龟类该基因片段的序列与人有较大差异,而龟类种间差异则较小,种内雌雄个体间则无差异．本文结果支持Ｓｏｘ基因在系统演化上十分保守的结论．     

中国葡萄科植物新分类群

报导了中国葡萄科植物的新分类群和若干新组合．文中提出了地锦属（ＰａｒｔｈｅｎｏｃｉｓｓｕｓＰｌａｎｃｈ．）新分类系统，并在乌蔹莓属（ＣａｙｒａｔｉａＪｕｓｓ．）中确立了两个新亚属．上属研究建立在多年野外观察和研究中国以及英国皇家植物园邱国（Ｋ）、爱丁堡植物园（Ｅ）和巴黎自然历史博物馆（Ｐ）等欧洲主要标本馆藏标本基础之上，所研究标本包括了《中国植物志》中大多数种类的模式标本．     

溴氰菊酯对鱼虾的毒性与安全评价研究

通过室内试验和野外试验研究了溴氰菊酯农药对龟类和虾类的毒性、回避性和实际危害性。结果表明，溴氰菊酯对鲤鱼的ＬＣ５０（２４ｈ）为１．０μｇ／Ｌ，对日本沼虾的ＬＣ５０（３ｈ）为０．４１μｇ／Ｌ。在稻田中按规定的剂量使用溴氰菊酯农药治虫，对稻田养鱼和邻近鱼塘无危害影响；对虾类有较大的危害性。但虾类对溴氰菊酯有十分明显的回避性，在自然水域中溴氰菊酯对虾类的实际危害程度比在实验条件下要轻些。     

城市化对绿地植物组成特征的影响——以深圳为例

随着对保护生物多样性与消除城市化过程不利影响的日益重视,城市森林结构功能和发展变化已经引起广泛关注。本文基于对深圳特区城市森林详细大量的样方调查,对城市森林植物科属种的成分和地理分布进行了研究。结果表明特区共有植物106科289属445种;其中大戟科、棕榈科、桑科、樟科、桃金娘科、蝶形花科、茜草科、山茶科、禾本科、含羞草科和木兰科11科的属种数占多数,共占101属182种,占总属数的34．95％和总种数的40．9％;在289属中,种数最多的是榕属（18种）,其次是冬青属（9种）,木槿属（6种）,蒲桃属（6种）和润楠属（6种）,共占总属数的1．73％,总种数的10．11％。特区种子植物可戈Ⅱ分为13个分布区类型和14个变型。深圳特区城市森林中的热带成分共有220属,357种,分别占特区植物区系地理成分的80％和83．2％,可以看出,特区较发达的经济水平和快速城市化过程并没有改变其强烈的热带性质。城市森林作为城市生态系统中具有自净功能的重要组分受到了城市化的强烈干扰,不仅表现在景观水平上的生境破碎化,更重要的是在小尺度的物种组成结构中有明显反映,为生物多样性保护和城市森林后期更新与维护带来问题。     

南海球形棕囊藻质体16SrDNA序列分析

测定了采自香港2株球形棕囊藻和湛江1株等鞭金藻质体16SrDNA基因序列,结合GenBank中下载的32条同源序列,分析序列特征并构建分子系统树。发现600bp序列中有可变位点42个,简约信息位点33个,可变位点和简约信息位点分别为全序列的7．0％和5．5％。A＋T的含量（52．5％）略大于C＋G含量（47．5％）,与已报道的棕囊藻属叶绿体和线粒体基因相似;在分子系统树上,同属藻种聚类在一起,属间遗传距离分别为0．0255-0．0503。棕囊藻属属内遗传距离0-0．0050,不同藻种相混杂,并未独立成支;质体16srDNA部分序列虽不能区分棕囊藻属内不同藻种,但能鉴定出GenBank中27个环境样品为棕囊藻属藻株,从而能确定其地理分布和相对丰度,对棕囊藻赤潮的预测预报具有重要意义。质体16srDNA在其他赤潮藻类物种鉴定方面的应用需要进一步研究。     

淮河水系淮南段椎实螺类(Lymnaeidae)生态学研究

于2004年春季（4月）和秋季（9月），分别对淮河水系淮南段不同环境条件下的10个站点椎实螺类的种类和分布特征进行了调查，共鉴定出椎实螺类5种，其中萝卜螺属4种，土蜗属1种，耳萝卜螺为优势种；全流域平均密度和生物量，春季为227．7Ind.／m^2。和175．50g／m^2，秋季为100．2Ind．／m^2和88．85g／m^2．工业污染较重的站点（D、F、I）椎实螺类的群落结构趋于简化，而流域底质生境异质性的站点（E、H）螺类种数呈现多样性．图1表2参16     

梅州城区植物群落的结构特征

2009年4—10月,采用群落调查法、主成分分析法对梅州城区5种绿地类型65个种植的植物群落进行研究,结果表明：1）各类植物共计43科105属147种（含变种）,其中乔木62种（42．17％）、灌木45种（30．61％）、草本植物31种（21．09％）、藤本植物9种（6．12％）;2）群落垂直结构为乔、灌、草3层复合结构者9个（13．85％）,为乔、草2层结构者34个（52．31％）,乔或草单层结构者12个（18．46％）;3）乔木树种平均胸径16．7cm,其中平均胸径〈10cm者23种（37．09％）,平均胸径10～20cm者29种（46．77％）,平均胸径20～30cm、〉30Cm者分别为5种（均为8．06％）;4）梅州城区植物群落结构的特征,可用乔木高度因子、胸径因子、密度因子及冠幅因子来表述,这4个主因子的方差累积贡献率达到81．55％,可以很好地反映出群落结构的大部分信息;5）梅州市城区乔木层的优势树种是垂榕、大叶榕、大王椰子,次优势种是阿珍榄仁、阴香、海南蒲桃、细叶榕、木棉、麻楝、香樟、洋紫荆,这11个树种分属桑科、棕榈科、使君子科·、樟科、桃金娘科、木棉科、楝科、豆科（云实科）,它们是梅州城市森林的骨干树种和基调树种,决定了梅州城市森林的南亚热带性质的外貌。     

用简并引物扩增与克隆D.radiodurans超氧化物歧化酶和过氧化氢酶基因片段

依据超氧化物歧化酶（ＳＯＤ） 和过氧化氢酶（Ｃａｔ） 的保守性氨基酸序列,设计简并引物,自Ｄ．ｒａｄｉｏｄｕｒａｎｓ 基因组ＤＮＡ扩增并克隆了ＳＯＤ和Ｃａｔ 基因片段．ＳＯＤ 和Ｃａｔ 基因片段分别长４５３ ｂｐ 和６７３ ｂｐ,各编码１５１和２２４ 个氨基酸,氨基酸序列与不同生物来源的ＳＯＤ或Ｃａｔ 具有高度同源性     

喀斯特石漠化区植被恢复不同阶段土壤真菌群落组成分析

为阐明西南喀斯特石漠化区植被恢复过程土壤真菌群落组成及优势关键类群,采集乔林、灌木林、灌草和草本群落4种不同植被恢复阶段不同小生境中(石面、石沟、石缝)的表层土壤,提取其DNA,利用IlluminaHiSeq平台对真菌ITS区扩增进行高通量测序后注释鉴定,开展植被恢复不同阶段真菌群落组成结构分析。结果表明,36个土壤样品中共获得2 437 541条有效序列,每个样品获得35 911条有效序列,OTU数目为5 437,包含5个门、626个属。乔林、灌木林阶段土壤真菌群落组成相近,由未分类真菌、Geminibasidium、被孢霉属Mortierella、蜡壳耳属Sebacina、青霉属Penicillium、子囊菌门Ascomycota未定属等组成,其中木霉属Trichoderma(LDA=4.11)、青霉属(LDA=4.35)、小蔓毛壳科Herpotrichiellaceae(LDA=4.00)、革菌科Thelephoraceae(LDA=4.10)、未分类真菌(LDA=4.86)为该类型的关键优势真菌类群。灌草过渡阶段与草本群落阶段各成一种类型,灌草过渡阶段包括蜡壳耳属、Geminibasidium、被孢霉属等,其中,蜡壳耳属(LDA=5.30)、Geminibasidium(LDA=4.77)、煤炱目Capnodiales(LDA=4.15)、格孢菌目Pleosporales未定属(LDA=4.28)为该类型的关键优势真菌类群。草本群落阶段由未分类真菌、镰刀菌属Fusarium、子囊菌门、被孢霉属、Archaeorhizomyces等组成,镰刀菌属(LDA=4.78)、Archeaorhizomyces(LDA=4.48)、支顶孢属(LDA=4.22)、肉座菌科(LDA=4.54)、子囊菌门未定属(LDA=4.63)为该类型的关键优势真菌类群。     

用简并引物扩增与克隆D.radiodurans超氧化物歧化酶和过氧化 …

依据超氧化物歧化酶（ＳＯＤ）和过氧化氢酶（Ｃａｌ）的保守性氨基酸序列,设计简并引物,自Ｄ．ｒａｄｉｏｄｕｒａｎｓ基因组ＤＮＡ扩增并克隆了ＳＯＤ和Ｃａｔ基因片 Ｃａｔ基因片段分别长４５３ｂｐ和６７３ｂｐ,各编码１５１和２２４个氨基酸,氨基酸序列与不同生物来源的ＳＯＤ或Ｃａｔ具有高度同源性。     

A model of area fidelity,nomadism, and distribution patterns of loggerhead sea turtles (<Emphasis Type="Italic">Caretta caretta</Emphasis>) in the Mediterranean Sea

Sea turtle tagging carried out in Italy in the period 1981–2006 resulted in 125 re-encounters of loggerhead turtles (Caretta caretta) after a mean of 2.5 years, from different marine areas in the Mediterranean. At first finding, turtles ranged 25–83 cm of curved carapace length. Data were analyzed according to size, area, habitat type, season, in order to provide indication of movement patterns. When integrated with other information, results indicate that: (1) a part of turtles in the oceanic stage show a nomad behavior with movements among different oceanic areas; (2) another part show fidelity to an oceanic area; (3) turtles in the neritic stage show fidelity to neritic areas, and once settled to one area, change to other neritic areas is unlikely; (4) nomad oceanic turtles are significantly larger than sedentary ones, and also larger than turtles found in neritic areas; it is hypothesized that these could be Atlantic turtles that eventually leave the Mediterranean; (5) ecological transition from oceanic to neritic habitats occurs at a wide range of sizes, and some turtles may have a very brief oceanic stage; (6) turtles in the oceanic stage are more likely to recruit to neritic areas close to their oceanic areas than to distant ones; (7) part of turtles from some Mediterranean nesting beaches might frequent a relatively limited area range, including both oceanic and neritic areas; (8) in most of the Mediterranean, latitudinal seasonal migrations are unlikely. A general model of movement patterns of loggerhead turtles in the Mediterranean is proposed.     

Origins of green turtle (<Emphasis Type="Italic">Chelonia mydas</Emphasis>) feeding aggregations around Barbados,West Indies

Although green turtles (Chelonia mydas Linnaeus) do not nest in Barbados, the easternmost island in the Caribbean archipelago, juveniles are regularly seen foraging in nearshore waters. To examine the stock composition of this foraging population, mitochondrial (mt) DNA control region sequences were analysed from 60 juvenile (31–70 cm curved carapace length) green turtles and compared with data published for key nesting populations in the Atlantic, as well as other feeding grounds (FGs) in the Caribbean. Eight distinct haplotypes were recognised among the 60 individual green turtles sampled around Barbados. Three of the haplotypes found have only previously been reported from western Caribbean nesting beaches, and two only from South Atlantic beaches. The nesting beach origin of one of the Barbados FG haplotypes is as yet unidentified. Stock mixture analysis based on Bayesian methods showed that the Barbados FG population is a genetically mixed stock consisting of approximately equal contributions from nesting beaches in Ascension Island (25.0%), Aves Island/Surinam (23.0%), Costa Rica (19.0%), and Florida (18.5%), with a lesser but significant contribution from Mexico (10.3%). Linear regression analysis indicated no significant effects of rookery population size or distance of the rookery from the FG on estimated contributions from the source rookeries to the Barbados FG. Our data suggest that the similar-sized green turtles sampled on the Barbados FG are a mixed stock of more diverse origins than any previously sampled feeding aggregations in the Caribbean region. The relatively large contribution from the Ascension Island rookery to the Barbados FG indicates that hatchlings from distant rookeries outside the Caribbean basin enter the North Atlantic gyre and become a significant part of the pool from which eastern Caribbean foraging populations are derived. These data support a life cycle model that incorporates a tendency of immatures to migrate from their initial foraging grounds at settlement towards suitable foraging grounds closer to their natal rookeries as they mature.Communicated by P.W. Sammarco, Chauvin     

Habitat use by loggerhead sea turtles <Emphasis Type="Italic">Caretta caretta</Emphasis> off the coast of eastern Spain results in a high vulnerability to neritic fishing gear

Previous studies of loggerhead sea turtles have concluded that drifting longlines were the main threat for immature specimens in the western Mediterranean, because immature loggerhead sea turtles mainly inhabit oceanic waters. However, recent aerial surveys have revealed large numbers of immature loggerhead sea turtles over the continental shelf of eastern mainland Spain, where turtles are exposed to neritic fishing gears but not to drifting longlines. We satellite-tracked seven loggerhead sea turtles (minimum straight carapace length (SCLmin) range: 36.5–55.0 cm) to assess whether the turtles in this region are vagrants from the adjoining oceanic regions or whether these loggerheads mostly inhabit the continental shelf. Satellite-tracking revealed that six of the tagged turtles avoided the oceanic realm and made extended use of the continental shelf, whereas only one individual could be considered a true vagrant as it avoided the continental shelf and primarily used the oceanic habitat. These results are in sharp contrast with those previously reported for immature loggerhead sea turtles of similar size from the south-western Mediterranean and fit well a relaxed ontogenic model that was recently proposed for loggerhead sea turtles in the central Mediterranean. Furthermore, these results demonstrate the vulnerability of loggerhead sea turtles of eastern mainland Spain to neritic fishing gears, as three of the seven turtles died and one was bycaught incidentally while being tracked over the continental shelf.     

Shark-inflicted injury frequencies, escape ability, and habitat use of green and loggerhead turtles

Interactions between large marine predators and their prey are difficult to observe and little is known about the risk of predation faced by sea turtles. The frequency of predator-inflicted injuries, however, has afforded insights into the predation risk faced by many taxa. We measured the frequency of shark-inflicted injuries on green (Chelonia mydas) and loggerhead (Caretta caretta) sea turtles in Shark Bay, Western Australia with a view to determining differences between species and sex-classes in the risk of predation from tiger sharks (Galeocerdo cuvier). Furthermore, we investigated how escape ability and habitat use might influence the probability of turtles being injured by sharks. Shark-inflicted injuries were more frequent on loggerhead than on green turtles, and most frequent on adult male loggerhead turtles. Species effects could not be attributed to differences in habitat use, since green turtles were found in habitats favored by tiger sharks more often than were loggerhead turtles. Green turtles, however, were faster and maneuvered better than loggerhead turtles, suggesting that escape ability is a factor in interspecific differences in injury frequency. The sex-class difference in injury frequency of loggerhead turtles suggests that males face greater predation risk than females and may take more risks. For green turtles, the lack of a sex difference in injury frequency might be due to greater escape ability lowering overall predation risk or to no differences between sexes in the benefits of risk-taking.     

Sea Turtles in North Carolina Waters

Until the turn of the century the inshore waters of North Carolina harbored populations of sea turtles large enough to support a commercial fishery. Based on a 4- to-5-year record of sighting reports by the public, interviews of recreational fishermen, and records kept by commercial fishermen the waters continue to provide important developmental habitats for loggerhead, green, and Kemp's ridley sea turtles. Leathertback and hawksbill sea turtles infrequently entered the inshore waters. Reports from the public and commercial fishermen indicated that sea turtles were present offshore North Carolina all year and were present in inshore waters April through December. Sea turtles were encountered most frequently in the Atlantic Ocean, but seasonal encounters in some inshore waters, such as Core and Pamlico Sounds, often were greater. In early May large numbers of leatherbacks were sighted in the ocean and moved northward along the beach. Reported sightings of leatherbacks declined markedly by late June. Based on incidental captures by commercial fishermen loggerhead turtles were the most numerous species in Pamlico and Core Sounds (80%), followed by green (15%) and Kemp's ridley sea turtles (5%). Most captured turtles were immature, and all were released alive. The abundance of immature sea turtles in North Carolina inshore waters serves to emphasize that southeast U.S. estuaries are important habitats for these threatened and endangered species. This recognition supported the decision of the U.S. National Marine Fisheries Service to extend the requirement for turtle excluder devices in shrimp trawls to inshore areas during the entire year, full implementation of these requirements was achieved by December 1994.     

Global Analysis of Anthropogenic Debris Ingestion by Sea Turtles

Ingestion of marine debris can have lethal and sublethal effects on sea turtles and other wildlife. Although researchers have reported on ingestion of anthropogenic debris by marine turtles and implied incidences of debris ingestion have increased over time, there has not been a global synthesis of the phenomenon since 1985. Thus, we analyzed 37 studies published from 1985 to 2012 that report on data collected from before 1900 through 2011. Specifically, we investigated whether ingestion prevalence has changed over time, what types of debris are most commonly ingested, the geographic distribution of debris ingestion by marine turtles relative to global debris distribution, and which species and life‐history stages are most likely to ingest debris. The probability of green (Chelonia mydas) and leatherback turtles (Dermochelys coriacea) ingesting debris increased significantly over time, and plastic was the most commonly ingested debris. Turtles in nearly all regions studied ingest debris, but the probability of ingestion was not related to modeled debris densities. Furthermore, smaller, oceanic‐stage turtles were more likely to ingest debris than coastal foragers, whereas carnivorous species were less likely to ingest debris than herbivores or gelatinovores. Our results indicate oceanic leatherback turtles and green turtles are at the greatest risk of both lethal and sublethal effects from ingested marine debris. To reduce this risk, anthropogenic debris must be managed at a global level. Análisis Global de la Ingesta de Residuos Antropogénicos por Tortugas Marinas     

Modelling the effect of fibropapilloma disease on the somatic growth dynamics of Hawaiian green sea turtles

The effect of the tumour-forming disease, fibropapillomatosis, on the somatic growth dynamics of green turtles resident in the Pala’au foraging grounds (Moloka’i, Hawai’i) was evaluated using a Bayesian generalised additive mixed modelling approach. This regression model enabled us to account for fixed effects (fibropapilloma tumour severity), nonlinear covariate functional form (carapace size, sampling year) as well as random effects due to individual heterogeneity and correlation between repeated growth measurements on some turtles. Somatic growth rates were found to be nonlinear functions of carapace size and sampling year but were not a function of low-to-moderate tumour severity. On the other hand, growth rates were significantly lower for turtles with advanced fibropapillomatosis, which suggests a limited or threshold-specific disease effect. However, tumour severity was an increasing function of carapace size—larger turtles tended to have higher tumour severity scores, presumably due to longer exposure of larger (older) turtles to the factors that cause the disease. Hence turtles with advanced fibropapillomatosis tended to be the larger turtles, which confounds size and tumour severity in this study. But somatic growth rates for the Pala’au population have also declined since the mid-1980s (sampling year effect) while disease prevalence and severity increased from the mid-1980s before levelling off by the mid-1990s. It is unlikely that this decline was related to the increasing tumour severity because growth rates have also declined over the last 10–20 years for other green turtle populations resident in Hawaiian waters that have low or no disease prevalence. The declining somatic growth rate trends evident in the Hawaiian stock are more likely a density-dependent effect caused by a dramatic increase in abundance by this once-seriously-depleted stock since the mid-1980s. So despite increasing fibropapillomatosis risk over the last 20 years, only a limited effect on somatic growth dynamics was apparent and the Hawaiian green turtle stock continues to increase in abundance.     

Effects of Organized Turtle Watches on Loggerhead (Caretta caretta) Nesting Behavior and Hatchling Production in Florida

To evaluate the effects of organized turtle watches on female sea turtles and their eggs, we quantified nesting behavior and hatchling production of loggerhead turtles ( Caretta caretta ) in south Brevard Country, Florida, U.S.A. We compared the duration of five phases of nesting behavior, the directness of the turtle's return path, rate of travel during return crawl, hatching success, and hatchling emergence success between experimental and control turtles. Experimental turtles nested while observed by an organized turtle watch group consisting of at least 15 people; control turtles were not observed by a turtle watch group. Experimental turtles spent significantly less time camouflaging nest sites than did control turtles. The duration of the other four phases of nesting behavior were not significantly different between the two groups. Experimental turtles also traveled less-direct paths during return crawls, although their rates of travel were not significantly different from those of control turtles. Hatching success and hatchling emergence success were not significantly different between experimental and control turtle nests in either year. Although turtle watch groups influenced nesting behavior, they were not found to be detrimental to hatchling production. Florida's turtle watch program is a means for garnering public support for sea turtle conservation through education, and it should continue.     

Western Mediterranean immature loggerhead turtles: habitat use in spring and summer assessed through satellite tracking and aerial surveys

An aerial survey was conducted in early spring 2002 over the continental shelf of the Balearic Archipelago to study the distribution of neritic loggerhead turtles. Furthermore, five juvenile loggerhead turtles [straight carapace length (SCL) range 37.1–48.7 cm], were instrumented with transmitters and monitored during 2003 by satellite tracking to study habitat use over a broader geographical range. The distribution of the turtles over the continental shelf matched habitat availability, as defined by depth. However, those tracked by satellite spent most of the time in the oceanic waters of the Algerian basin and generally avoided continental shelf areas. In these turtles, average speed of travel and mean cosine of turning angle did not significantly differ between habitats, indicating that avoidance of shelf areas is not due to active habitat selection. On average, tracked turtles spent 35.1±19.7% of the time at the surface, although surface time was much greater in the turtle with the shortest carapace length, suggesting that this individual had limited swimming capacity. We conclude that the transition between passive drifting and active habitat selection occurs at an SCL of about 40 cm. The turtles followed tracks that matched prevailing currents, but on some occasions they also swam upstream. Hence, the distribution of late juvenile loggerhead turtles in the southern and central western Mediterranean may reflect a combination of passive drifting and active habitat selection.Communicated by O. Kinne, Oldendorf/Luhe     

Phylogenetic relationship among several genera of Dictyotaceae (Dictyotales, Phaeophyceae) based on 18S rRNA and partial rbcL gene sequences

The partial sequences of the 18S rRNA gene and the rbcL gene, RuBisCo spacer region of representatives of the Dictyotaceae were determined and compared to resolve their phylogenetic relationships. A total of 1,861 base pairs of 18S rDNA sequences were aligned and examined. There was a high similarity of nucleotide sequences within the tribe Dictyoteae (99.4-99.6%) and the tribe Zonarieae (92.8-99.8%). The largest intergeneric divergence within the Dictyotaceae was 7.31%, between Dilophus and Zonaria. The aligned 422 bases of partial rbcL gene sequences gave a similar phylogenetic relationship among taxa to those of the 18S rDNA sequences, although our alignment covered less than 30% of the whole gene. All genera of Dictyotales consisted of several clades forming a polychotomy in MP trees based on partial rbcL gene sequences and on 18S rDNA sequences. The genera within the tribe Dictyoteae formed a clade, a Dictyota-Phacydictyon-Dilophus clade, while genera of the tribe Zonarieae formed four clades: Padina; Distromium-Lobophora-Zonaria; Spatoglossum-Lobospira; and Dictyopteris-Spatoglossum. All genera of the Dictyotaceae included in these sequence analyses are classified into five groups, which have little phylogenetic resolution among them. The genera classified in the tribe Zonarieae according to Womersley's criteria do not appear to be monophyletic, based on our analyses. Although not all genera of Dictyotaceae were analysed, our data suggest that the status of the meristem cells should not be a criterion for separating tribes within the family Dictyotaceae and that other hierarchical systems should be adopted to properly reflect phylogenetic relationships.