A flood risk decision making approach for Mediterranean tree crops using GIS; climate change effects and flood-tolerant species

The aim of this study is to estimate flood risk in the Mediterranean island of Crete in Greece, using Geographic Information Systems (GIS). The island of Crete, covering an area of 8265 km², is one of the most intensively Mediterranean agricultural areas dominated by fruit tree crops. In this study, the factors that are directly related to the creation of a flood are combined in a GIS environment in order to identify the most prone flooding areas. These factors are: (a) the Flow accumulation (F), (b) the Rainfall intensity (R), (c) the Elevation (E), (d) the Geology (G), (e) the Land use (L), and (f) the Slope (S). The initials of these factors gave the name to the proposed method: “FREGLS”. The above factors are presented in the form of grid maps and are used in order to determine the final flood risk map. Subsequently, the flood prone fruit tree areas of Crete can be estimated by applying a methodology based on weighting coefficients. The reliability of the final flood risk map is verified using historical flooded data. Additionally, the impact of global climate change scenarios A2 and B1, on flood risk in Crete is examined. Based on the above, this study highlights the flood prone fruit tree areas in the island of Crete under current and future climate conditions. Also, flood-tolerant fruit trees which appear to be economically important for Greece are recommended, especially for the high flood risk areas of the island. The proposed methodology can be applied as a decision making tool for flood risk mitigation to any river basin where tree crops are cultivated.     

Genetic structure and different color morphotypes suggest the occurrence and bathymetric segregation of two incipient species of Sebastes off Argentina

Rockfishes of the genus Sebastes are extensively distributed in the Pacific and Atlantic oceans. Although the occurrence of two morphologically similar species in the Southern Hemisphere, Sebastes oculatus and Sebastes capensis, is now clearly established, the taxonomic status and phylogeographic patterns for the genus in the region have not yet been completely resolved. In this study, we provide new insights into the taxonomy and evolutionary relationships of rockfishes inhabiting the Southwestern Atlantic Ocean, off the coast of mainland Argentina, by combining mitochondrial DNA (mtDNA) control region sequences, microsatellite data, and color pattern analyses. Differences in coloration (“dark” and “light” fish) together with bathymetric segregation between color morphotypes were evident from fish collection and literature review. In addition, the mtDNA phylogenetic analysis and Bayesian clustering analysis using microsatellite data separated the fish into two distinct groups (F _ST?=?0.041), most likely representing incipient species. Our results suggest that speciation-by-depth in the absence of physical barriers could be a widespread mechanism of speciation in Sebastes from both the Northern and Southern Hemispheres. Nevertheless, the degree of genetic differentiation found, added to the large number of individuals displaying high levels of admixture, points to the occurrence of incomplete reproductive barriers between color morphotypes. Beyond the taxonomic and phylogeographic implications of our findings, the occurrence of distinct groups of Sebastes off the coast of Argentina being targeted by different fisheries (angling and trawling) has consequences for the design and implementation of appropriate fishery regulations to avoid overharvest of either group.     

Mitochondrial DNA depletion presenting prenatally with skin edema and multisystem disease immediately after birth

We describe two newborn sisters who presented in the third trimester with diminished fetal movements and skin edema, but with no other signs of hydrops fetalis. Within hours of birth, both developed profound lactic acidemia, followed by multi-organ failure. In muscle mitochondria, the activity of all enzymatic complexes that contain mitochondrial DNA (mtDNA)-encoded subunits was markedly decreased. Southern blot analysis revealed a profound reduction in the mtDNA/nuclear DNA ratio, implying mtDNA depletion. The prenatal identification of skin edema in two patients with mtDNA depletion, and its absence in a healthy sibling, suggest that skin edema should be regarded as a novel manifestation of mtDNA depletion. This finding shows that mtDNA depletion can present prenatally and, consequently, may aid the clinician in making a diagnosis, prenatally, of this genetic defect. Copyright © 2002 John Wiley & Sons, Ltd.     

Techno-economic assessment of recycling practices of municipal solid wastes in Cyprus

In this study, the application of modern recycling technologies in accordance with the European and Cyprus legislation, aiming at the recovery of paper, glass, plastics, aluminium and non-ferrous metals from municipal solid waste (MSW) is presented. The international situation was reviewed, the general trends are marked and the main recycling practices treatments are reported. The paper presents also an overview of the current practices and their environmental implications in Cyprus, and discusses the design and feasibility of a recycling plant located in Pafos area. Three recycling practices for recyclables that were separated at source, varied by their level of automation (0%, 50%, 100%), have been studied from the technical and economic aspect. It was considered that source segregation of organic part from the MSW takes place and no organic matter reaches the recycling plant. A sensitivity analysis was carried out in order to define the most significant parameters affecting the viability of a recycling scheme. It is proved that a fully automated recycling plant with a capacity of 6 tn/h of recyclables located in the industrial area of Pafos, seems to be conditionally feasible and economically profitable solution.     

A multidisciplinary study of archaeological grape seeds

We report here the first integrated investigation of both ancient DNA and proteins in archaeobotanical samples: medieval grape (Vitis vinifera L.) seeds, preserved by anoxic waterlogging, from an early medieval (seventh–eighth century A.D.) Byzantine rural settlement in the Salento area (Lecce, Italy) and a late (fourteenth–fifteenth century A.D.) medieval site in York (England). Pyrolysis gas chromatography mass spectrometry documented good carbohydrate preservation, whilst amino acid analysis revealed approximately 90% loss of the original protein content. In the York sample, mass spectrometry-based sequencing identified several degraded ancient peptides. Nuclear microsatellite locus (VVS2, VVMD5, VVMD7, ZAG62 and ZAG79) analysis permitted a tentative comparison of the genetic profiles of both the ancient samples with the modern varieties. The ability to recover microsatellite DNA has potential to improve biomolecular analysis on ancient grape seeds from archaeological contexts. Although the investigation of five microsatellite loci cannot assign the ancient samples to any geographic region or modern cultivar, the results allow speculation that the material from York was not grown locally, whilst the remains from Supersano could represent a trace of contacts with the eastern Mediterranean.     

Millennium-old farm breeding of Chinese softshell turtles (<Emphasis Type="Italic">Pelodiscus</Emphasis> spp.) results in massive erosion of biodiversity

Chinese softshell turtles (Pelodiscus spp.) are widely distributed, ranging from the Amur and Ussuri Rivers in the Russian Far East through the Korean Peninsula, Japan, and eastern, central, and southern China to southern Vietnam. In East and Southeast Asia, Chinese softshell turtles are traditionally exploited for food and have been farm-bred in China since the Spring and Autumn Period, more than 2400 years ago. Currently, the annual production of Pelodiscus amounts to 340,000 t in China alone. Using mitochondrial DNA (2428 bp) and five nuclear loci (3704 bp), we examined broad sampling of wild and farm-bred Pelodiscus to infer genetic and taxonomic differentiation. We discovered four previously unknown mitochondrial lineages, all from China. One lineage from Jiangxi is deeply divergent and sister to the mitochondrial lineage of Pelodiscus axenaria. The nuclear loci supported species status for P. axenaria and the new lineage from Jiangxi. Pelodiscus maackii and P. parviformis, both harboring distinct mitochondrial lineages, were not differentiated from P. sinensis in the studied nuclear markers. The same is true for two new mitochondrial lineages from Zhejiang, China, represented by only one individual each, and another new lineage from Anhui, Guangdong, Jiangxi and Zhejiang, China. However, Vietnamese turtles yielding a mitochondrial lineage clustering within P. sinensis were distinct in nuclear markers, suggesting that these populations could represent another unknown species with introgressed mitochondria. Its species status is also supported by the syntopic occurrence with P. sinensis in northern Vietnam and by morphology. In addition, we confirmed sympatry of P. axenaria and P. parviformis in Guangxi, China, and found evidence for sympatry of P. sinensis and the new putative species from Jiangxi, China. We also discovered evidence for hybridization in turtle farms and for the occurrence of alien lineages in the wild (Zhejiang, China), highlighting the risk of genetic pollution of native stock. In the face of the large-scale breeding of Pelodiscus, we claim that the long-term survival of distinct genetic lineages and species can only be assured when an upscale market segment for pure-bred softshell turtles is established, making the breeding of pure lineages lucrative for turtle farms. Our findings underline that the diversity of Pelodiscus is currently underestimated and threatened by anthropogenic admixture. We recommend mass screening of genetic and morphological variation of Chinese softshell turtles as a first step to understand and preserve their diversity.     

Sustainable land management practices as providers of several ecosystem services under rainfed Mediterranean agroecosystems

Little is known about the multiple impacts of sustainable land management practices on soil and water conservation, carbon sequestration, mitigation of global change and crop yield productivity in semiarid Mediterranean agroecosystems. We hypothesized that a shift from intensive tillage to more conservative tillage management practices (reduced tillage optionally combined with green manure) leads to an improvement in soil structure and quality and will reduce soil erosion and enhance carbon sequestration in semiarid Mediterranean rainfed agroecosystems. To test the hypothesis, we assessed the effects of different tillage treatments (conventional (CT), reduced (RT), reduced tillage combined with green manure (RTG), and no tillage (NT)) on soil structure and soil water content, runoff and erosion control, soil carbon dioxide (CO₂) emissions, crop yield and carbon sequestration in two semiarid agroecosystems with organic rainfed almond (Prunus dulcis Mill) in the Murcia Region (southeast Spain). It was found that reduction and suppression of tillage under almonds led to an increase in soil water content in both agroecosystems. Crop yields ranged from 775 to 1,766 kg ha^?1 between tillage treatments, but we did not find a clear relation between soil water content and crop yield. RT and RTG treatments showed lower soil erosion rates and higher crop yields of almonds than under CT treatment. Overall, higher soil organic carbon contents and aggregate stability were observed under RTG treatment than under RT or CT treatment. It is concluded that conversion from CT to RTG is suitable to increase carbon inputs without enhancing soil CO₂ emissions in semiarid Mediterranean agroecosystems.     

被动式采样器在大区域大气VOC监测中的应用

应用VOC被动式采样器监测了地中海东部塞浦路斯岛大气中挥发性有机化合物(volatile organic compounds,VOC)的浓度。通过岛上设置的80个VOC采样点对苯,甲苯,对、邻、间二甲苯(Benzene、Toluene、o-xylene、m,p-xylene,BTX)数次采样及分析结果表明,其被动采样器中BTX回收率>95%,BTX平行实验的相对标准偏差<6.28%,采样和分析方法准确。得到的污染物分布图较准确地反映了塞浦路斯岛实际污染情况。     

Genetic diversity affects colony survivorship in commercial honey bee colonies

Honey bee (Apis mellifera) queens mate with unusually high numbers of males (average of approximately 12 drones), although there is much variation among queens. One main consequence of such extreme polyandry is an increased diversity of worker genotypes within a colony, which has been shown empirically to confer significant adaptive advantages that result in higher colony productivity and survival. Moreover, honey bees are the primary insect pollinators used in modern commercial production agriculture, and their populations have been in decline worldwide. Here, we compare the mating frequencies of queens, and therefore, intracolony genetic diversity, in three commercial beekeeping operations to determine how they correlate with various measures of colony health and productivity, particularly the likelihood of queen supersedure and colony survival in functional, intensively managed beehives. We found the average effective paternity frequency (m _e ) of this population of honey bee queens to be 13.6?±?6.76, which was not significantly different between colonies that superseded their queen and those that did not. However, colonies that were less genetically diverse (headed by queens with m _e ?≤?7.0) were 2.86 times more likely to die by the end of the study when compared to colonies that were more genetically diverse (headed by queens with m _e ?>?7.0). The stark contrast in colony survival based on increased genetic diversity suggests that there are important tangible benefits of increased queen mating number in managed honey bees, although the exact mechanism(s) that govern these benefits have not been fully elucidated.     

Host genotype and age have no effect on rejection of parasitic eggs

Egg rejection belongs to a widely used host tactic to prevent the costs incurred by avian brood parasitism. However, the genetic basis of this behaviour and the effect of host age on the probability of rejecting the parasitic egg remain largely unknown. Here, we used a set of 15 polymorphic microsatellite loci, including a previously detected candidate locus (Ase64), to link genotypes of female great reed warblers (Acrocephalus arundinaceus), a known rejecter, with their egg rejection responses in two host populations. We also tested whether host female age, as a measure of the experience with own eggs, plays a role in rejection of common cuckoo (Cuculus canorus) eggs. We failed to find any consistent association of egg rejection responses with host female genotypes or age. It seems that host decisions on egg rejection show high levels of phenotypic plasticity and are likely to depend on the spatiotemporal variation in the parasitism pressure. Future studies exploring the repeatability of host responses towards parasitic eggs and the role of host individual experience with parasitic eggs would greatly improve our understanding of the variations in host behaviours considering the persistence of brood parasitism in host populations with rejecter phenotypes.     

Indian-Asian Relationship: mtDNA Reveals More

 Recent studies on human mtDNA have identified continent-specific restriction enzyme sites and resultant haplogroups among populations from different regions of the world. Such studies have helped in elaborating the models for human migrations. We have studied Indian mtDNAs to identify the recognized world ethnic elements present in it. The results presented here are based on the study of DdeI 10394 site along with the associated Asian-specific AluI 10397 site in the mtDNA sequences of the Indian samples. On examining all the related haplogroups, this study suggests that the apparent affinities of Indians and East Asians (comprising Chinese, Japanese, Southeast Asians etc.) could be due to a proto-Asiatic element present in Indians. Received: 12 April 1999 / Accepted in revised form: 13 January 2000     

A revised stratigraphic framework for Later Cenozoic sequences in the northeastern Mediterranean region

This study describes the lithostratigraphic character of mid-Cenozoic (Oligocene–Pliocene) sequences in different parts of the northeastern Mediterranean area and offers a detailed stratigraphic correlation for this region. The sequences concerned are drawn from the Camardi area (south–central Anatolia), the Adana Basin, the Misis Mountains and the Kyrenia Range (northern Cyprus) and the submerged Florence Rise (west of Cyprus). The stratigraphic relationships identified here indicate the following: (a) Following the middle Eocene (Lutetian) regression there was uplift throughout the entire region; (b) Episodes of fluvial and lacustrine deposition in intramontane settings ensued in most of this region during the late Eocene/early Miocene interval; (c) Following a regionally extensive phase of tectonic compression, major marine transgression commenced in the late Oligocene in northern Cyprus and in the early Miocene in adjacent southern Turkey, with the exception of the Ecemis Fault Zone where continental deposition continued; (d) These Oligo-Miocene transgressive sequences comprise a broadly diachronous complex of both shallow and deeper marine facies, including reefal carbonates, littoral clastics, basinal shales and fan-turbidites; (e) Deeper marine Miocene facies persisted longer in the Misis area and in northern Cyprus; (f) A regional regression occurred throughout most of the area during the late Serravallian to Tortonian interval and is marked by the abrupt, locally discordant appearance of extensive shallow marine, deltaic and fluvial deposits; (g) Continued regression in the Messinian led to the formation of significant evaporite deposits in the western and southern parts of the region, but localized uplift of the Misis area is attested by the initial deformation of the Neogene rocks there and the absence of Messinian sediments from this area; (h) In the Pliocene there was extensive emergence of the northern parts of the region interrupted by brief marine incursions. The present-day drainage pattern was established at this time; (i) Marine conditions persisted longer in northern Cyprus, where emergence occurred only in the latest Pliocene.     

Molecular evidence of facultative intraguild predation by Monochamus titillator larvae (Coleoptera: Cerambycidae) on members of the southern pine beetle guild

The southern pine bark beetle guild (SPBG) is arguably the most destructive group of forest insects in the southeastern USA. This guild contains five species of bark beetles (Coleoptera: Curculionidae: Scolytinae): Dendroctonus frontalis, Dendroctonus terebrans, Ips avulsus, Ips calligraphus, and Ips grandicollis. A diverse community of illicit receivers is attracted to pheromones emitted by the SPBG, including the woodborers Monochamus carolinensis and Monochamus titillator (Coleoptera: Cerambycidae). These woodborers have been traditionally classified as resource competitors; however, laboratory assays suggest that larval M. carolinensis may be facultative intraguild predators of SPBG larvae. This study used polymerase chain reaction (PCR)-based molecular gut content analyses to characterize subcortical interactions between M. titillator and members of the SPBG. The half-lives of SPBG DNA were estimated in the laboratory prior to examining these interactions in the field. A total of 271 field-collected M. titillator larvae were analyzed and 26 (9.6?%) tested positive for DNA of members of the SPBG. Of these larvae, 25 (96.2?%) tested positive for I. grandicollis and one (3.8?%) for I. calligraphus. Failure to detect D. terebrans and D. frontalis was likely due to their absence in the field. I. avulsus was present, but primers developed using adult tissues failed to amplify larval tissue. Results from this study support the hypothesis that larval Monochamus spp. are facultative intraguild predators of bark beetle larvae. Additionally, this study demonstrates the capabilities of PCR in elucidating the interactions of cryptic forest insects and provides a tool to better understand mechanisms driving southern pine beetle guild population fluctuations.     

Mediterranean shrublands carbon sequestration: environmental and economic benefits

To date, only a few attempts have been done to estimate the contribution of Mediterranean ecosystems to the global carbon cycle. Within this context, shrub species, composition and structure of the Mediterranean shrublands developing along the Latium coast (Italy) were analyzed in order to evaluate their contribution to carbon (C) sequestration, also taking into consideration the economic benefits at a national level. The considered shrublands had a shrub density of 1,200?±?500 shrubs ha^?1. Shrubs were classified into small (S), medium (M) and large (L), according to their volume (V) and leaf area index (LAI). The total yearly carbon dioxide (CO₂) sequestration per species (SC_y) was calculated multiplying the total photosynthetic leaf surface area (spt) of each species by the mean yearly photosynthetic rate and the total yearly photosynthetic activity time (in hours). Q. ilex and A. unedo had the highest SC_y (46.2?±?15.8 kg CO₂ year^?1, mean value), followed by P. latifolia (17.5?±?6.2 kg CO₂ year^?1), E. arborea, E. multiflora, C. incanus, P. lentiscus, R. officinalis, and S. aspera (6.8?±?4.2 kg CO₂ year^?1, mean value). The total yearly CO₂ sequestration per shrub (SC_shy) was 149?±?5 kg CO₂ year^?1 in L, decreasing 30 % in M and 80 % in S shrubs. Taking into account the frequency of S, M and L and their SC_shy, the total CO₂ sequestration of the Mediterranean maquis was quantified in 80 Mg CO₂ ha^?1?year^?1, corresponding to 22 Mg C ha^?1?year^?1. From a monetary viewpoint, this quantity could be valued to more than 500 US$ ha^?1?year^?1. Extending this benefit to the Mediterranean shrublands throughout the whole country, we obtained a nationwide estimated annual benefit in the order of $500 million.     

Evidence of at least two evolutionary lineages in Melipona subnitida (Apidae, Meliponini) suggested by mtDNA variability and geometric morphometrics of forewings

Melipona subnitida, a tropical stingless bee, is an endemic species of the Brazilian northeast and exhibits great potential for honey and pollen production in addition to its role as one of the main pollinators of the Caatinga biome. To understand the genetic structure and better assist in the conservation of this species, we characterized the population variability of M. subnitida using geometric morphometrics of the forewing and cytochrome c oxidase I gene fragment sequencing. We collected workers from six localities in the northernmost distribution. Both methodologies indicated that the variability among the sampled populations is related both to the environment in which samples were collected and the geographical distance between the sampling sites, indicating that differentiation among the populations is due to the existence of at least evolutionary lineages. Molecular clock data suggest that this differentiation may have begun in the middle Pleistocene, approximately 396 kya. The conservation of all evolutionary lineages is important since they can present differential resistance to environmental changes, as resistance to drought and diseases.     

Climate and air quality-driven scenarios of ozone and aerosol precursor abatement

In addition to causing domestic and regional environmental effects, many air pollutants contribute to radiative forcing (RF) of the climate system. However, climate effects are not considered when cost-effective abatement targets for these pollutants are established, nor are they included in current international climate agreements. We construct air pollution abatement scenarios in 2030 which target cost-effective reductions in RF in the EU, USA, and China and compare these to abatement scenarios which instead target regional ozone effects and particulate matter concentrations. Our analysis covers emissions of PM (fine, black carbon and organic carbon), SO₂, NO_x, CH₄, VOCs, and CO. We find that the effect synergies are strong for PM/BC, VOC, CO and CH₄. While an air quality strategy targeted at reducing ozone will also reduce RF, this will not be the case for a strategy targeting particulate matter. Abatement in China dominates RF reduction, but there are cheap abatement options also available in the EU and USA. The justification for international cooperation on air quality issues is underlined when the co-benefits of reduced RF are considered. Some species, most importantly SO₂, contribute a negative forcing on climate. We suggest that given current knowledge, NO_x and SO₂ should be ignored in RF-targeted abatement policies.     

Prenatal exclusion of Leigh syndrome due to T8993C mutation in the mitochondrial DNA

Leigh syndrome (LS) is a mitochondrial encephalopathy that is caused by a mutation either in the mitochondrial DNA (mtDNA) or in the nuclear encoded genes of the mitochondrial proteins. Prenatal diagnosis of defects in the mtDNA is usually problematic because of mtDNA heteroplasmy and tissue specificity. However, the mutations T8993 G/C in the ATP synthase subunit 6 gene of the mtDNA show a more even tissue distribution and do not appear to change significantly over time. There are only few reports of prenatal diagnosis of the T8993G mutation in Leigh disease. Here we describe the first prenatal genetic testing of T8993C in a fetus of a mother whose previous child had died of Leigh syndrome due to the T8993C mutation. Mutant load in the chorionic villus sample (CVS) as well as in amniocytes was undetectable, thus predicting a very high likelihood of an unaffected outcome, indicative of a healthy baby. The diagnosis was confirmed after birth. Gathering data on the prenatal diagnosis of mtDNA mutations is of great importance so that prenatal diagnosis of both T8993G and T8993C mutations can be offered routinely. Copyright © 2002 John Wiley & Sons, Ltd.     

Morphological change and phenotypic plasticity in native and non-native pumpkinseed sunfish in response to competition

Non-indigenous species are oftentimes exposed to ecosystems with unfamiliar species, and organisms that exhibit a high degree of phenotypic plasticity may be better able to contend with the novel competitors that they may encounter during range expansion. In this study, differences in morphological plasticity were investigated using young-of-year pumpkinseed sunfish (Lepomis gibbosus) from native North American and non-native European populations. Two Canadian populations, isolated from bluegill sunfish (L. macrochirus) since the last glaciation, and two Spanish populations, isolated from bluegill since their introduction in Europe, were reared in a common environment using artificial enclosures. Fish were subjected to allopatric (without bluegill) or sympatric (with bluegill) conditions, and differences in plasticity were tested through a MANOVA of discriminant function scores. All pumpkinseed populations exhibited dietary shifts towards more benthivorous prey when held with bluegill. Differences between North American and European populations were observed in body dimensions, gill raker length and pelvic fin position. Sympatric treatments induced an increase in body width and a decrease in caudal peduncle length in native fish; non-native fish exhibited longer caudal peduncle lengths when held in sympatry with bluegill. Overall, phenotypic plasticity influenced morphological divergence less than genetic factors, regardless of population. Contrary to predictions, pumpkinseeds from Europe exhibited lower levels of phenotypic plasticity than Canadian populations, suggesting that European pumpkinseeds are more canalized than their North American counterparts.     

Identification of a novel β0 - thalassaemia mutation in a greek family and subsequent prenatal diagnosis

We present a case in which a Greek couple was considered not to be at risk of having children with homozygous β-thalassaemia, an assessment based largely on the father's belief that he carried α-thalassaemia. After their first child was diagnosed with homozygous β-thalassaemia, the case was re-assessed and both parents were shown to have the haematological profile of β-thalassaemia trait. Screening for the common Mediterranean mutations demonstrated that the mother carries the IVS-1 nt 110 G→A β⁺ -thalassaemia mutation. Direct nucleotide sequencing of PCR-amplified DNA revealed that the father carries a novel β⁰-thalassaemia mutation, frameshift codons 9/10 (+T). The couple's second pregnancy was terminated after prenatal testing revealed that the fetus had inherited both parental mutations. This case illustrates the need to confirm the carrier status of individuals prior to assessing their genetic risks, and highlights the importance of being able to identify rare or novel β-thalassaemia mutations.