Importance of macroalgal fields as coral reef fish nursery habitat in north-west Australia

Macroalgal fields are a feature of the shallow tropical benthos, yet their importance for coral reef fish population dynamics remains poorly understood. The abundance of fish recruits was recorded using underwater visual census at six macroalgal and 11 coral reef sites in the Montebello and Barrow Islands. Surveys identified 6,935 individual recruit fish from 105 species, 54 genera and 20 families. Of these, 1,401 recruits from 48 species, 31 genera and 14 families were observed in macroalgal sites. Sixteen of the 105 recruit species (15.2 %) were observed exclusively at macroalgal sites. Forty-two (87.5 %) of these species have been observed as adults on adjacent coral reefs. Species composition of fish recruits differed significantly between the two habitats. Corallivore, small omnivore and zooplanktivore recruits had significantly higher numbers in the coral sites, while the results clearly demonstrate that juveniles, within the genera Lethrinus and Choerodon, as well as large algal croppers, are predominantly found at macroalgal (74–100 %) rather than coral-dominated sites. High-canopy macroalgae cover was positively correlated with abundance of these taxa, particularly Lethrinids (r ² = 0.40). This study is the first to highlight the important attributes of tropical macroalgal fields and suggests that they have a similar role to seagrass meadows as essential juvenile habitat, thus warranting greater attention in conservation planning and ecological studies.     

Steps in the construction of underwater coral nursery, an essential component in reef restoration acts

Many coral reefs worldwide are rapidly declining, but efficient restoration techniques are not yet available. Here, we evaluate methodologies for reef restoration based on the “gardening concept”. A floating mid-water prototype nursery was placed at 6 m depth (14 m above sea-bottom) within the nutrient-enriched environment of a fish farm (Eilat, Red Sea). Ten colonies from five branching coral species provided 6,813 fragments (0.5–3 cm height). The fragments, each attached to a plastic pin, were inserted into plastic nets that were tied to a rope-net floating nursery. After 144 nursery days, only 13.1% of the fragments died and 21.2% were detached by mechanical forces. Small colonies ready for transplantation developed within 144–200 days. Ramets’ ecological volumes increased 13–46 folds and their heights by a factor of 3.5. After 306 days, the ecological volumes of the colonies increased 147–163 fold as compared to original volumes (revealing a daily growth rate constant of 1.67% during the first 5–10 months) and height values by a factor of six. Building and maintenance costs of the nursery were low. This nursery prototype demonstrates the feasibility of the coral “gardening concept” by fulfilling several important needs, namely, mass production of coral colonies at low costs, high survivorship, fast growth, short nursery phase and improved methodologies for handling farmed colonies.     

Fine-scale distribution of larval fishes: patterns and processes adjacent to coral reefs in Kaneohe Bay,Hawaii

Plankton samples were taken from January to June 1987 in Kaneohe Bay, Oahu, Hawaiian Islands, with a free-fall plankton net, to investigate the fine-scale distribution of larval fishes around coral reefs. Daytime samples indicated that the postflexion larvae of two gobiids (Psilogobius mainlandi and an unidentified species) were significantly more abundant at stations immediately adjacent to reefs (near-reef) than at stations in open water off the reef (off-reef). These postflexion gobiid larvae appeared to be capable of resisting advection and dispersal while remaining in the water column near suitable adult habitats. The larvae of Foa brachygramma (Apogonidae) and Encrasicholina purpurea (Engraulidae) were significantly more abundant at off-reef stations than at near-reef stations. Nighttime samples indicated that the gobiid larvae depend on visual cues to remain near the reef. The horizontal distributions of F. brachygramma and E. purpurea larvae appeared to be related to their vertical positioning. These data suggest that typical ichthyoplankton surveys which do not sample close to adult fish habitats would greatly underestimate the abundances of larvae such as the gobiids.     

Sexual reproduction, larval development and benthic planulae of the solitary coral Monomyces rubrum (Scleractinia: Anthozoa)

The reproductive biology of the solitary ahermatypic coral Monomyces rubrum was studied in northeastern New Zealand between January 1996 and January 1998. The period of oogenesis lasted around 11 months, from late January to December, while spermatogenesis was more rapid, starting in late August and culminating in a spawning period in early December. Reproduction commenced at a polyp size of around 1,000 mm³ (5-6 years old) and the maximum estimated fecundity of the largest corals (7,000 mm³) was no more than 200 eggs. Oocytes were probably fertilized while within the mesentery and were shed into the coelenteron where they developed, via a solid blastula stage, for approximately 1 month. Planulae were relatively large, 3-4 mm in length and 1-2 mm diameter at the time of release, and crawled or swam immediately to the substratum. Peaks of planula shedding were semi-lunar in January 1997, but only one peak was observed in January 1998. The production of a few large rapidly settling larvae by this member of the family Flabellidae is consistent with the trend for solitary short-lived corals from other families to brood larvae rather than spawn gametes.     

Transmission distance of chemical cues from coral habitats: implications for marine larval settlement in context of reef degradation

The present study (Ishigaki Island, Japan) explored the distance of transmission of chemical cues emitted by live versus dead coral reefs (Exp. 1: High performance liquid chromatography (HPLC) analyses with water sampling station at 0, 1, and 2 km away from the reef) and the potential attraction of these chemical cues by larval fish, crustaceans, and cephalopods (Exp. 2: choice flume experiment conducted on 54 Chromis viridis larvae, 52 Palaemonidae sp larvae, and 16 Sepia latimanus larvae). In the experiment 1, HPLC analyses highlighted that the live coral reef (and not the dead coral reef) produced different and distinct molecules, and some of these molecules could be transported to a distance of at least 2 km from the reef with a reduction of concentration by 14–17-fold. In the experiment 2, C. viridis, Palaemonidae sp, and S. latimanus larvae were significantly attracted by chemical cues from a live coral reef (sampling station: 0 km), but not from a dead coral reef. However, only C. viridis larvae detected the chemical cues until 1 km away from the live coral reef. Overall, our study showed that chemical cues emitted by a live coral reef were transported farthest away in the ocean (at least 2 km) compared to those from a dead coral reef and that fish larvae could detect these cues until 1 km. These results support the assumption of a larval settlement ineffective in degraded coral reefs, which will assist conservationists and reef managers concerned with maintaining biodiversity on reefs that are becoming increasingly degraded.     

Coefficient of variation of sea surface temperature (SST) as an indicator of coral bleaching

Coral bleaching has become a major problem on reefs around the world in recent decades. It is believed that mean temperature alone is the primary force driving this ecological phenomenon. We propose that variance in temperature in the short term is just as important as the mean. Thirty years of daily sea surface temperature (SST) data have been collected by the University of Puerto Rico at Mayaguez Marine Laboratory in La Parguera, PR. These data were collated and analyzed initially (by Amos Winter) for their relationship to coral bleaching in this area. We found that the data fell into three categories: high mean temperatures associated with severe bleaching, cooler mean temperatures associated with no bleaching, and years of high SSTs but with no coral bleaching. Here, we examined the relationship between mean temperature during those months in which bleaching occurred, temperature variance (as measured by standard deviation), and coefficient of variation (CV; i.e., SD standardized by the mean). We also derived a critical threshold temperature and level of resolution in time for calculating these statistics to clearly describe the circumstances of bleaching versus non-bleaching events, particularly at marginal bleaching temperatures. These characteristics were compared for the four warmest months of the year (July–October) for four warm bleaching years (1969, 1987, 1990, and 1995), four cool non-bleaching years (1984, 1985, 1986, and 1988), and two warm non-bleaching years (1994 and 2000). No relationship was found between the mean SST and SD in terms of predicting bleaching. The two primary statistics which, in concert, did indicate bleaching, however, were the short-term, biweekly mean temperature and its the associated CV. Bleaching occurs in association with both high temperatures and a high CV. The CV becomes a critical determinant of bleaching only when temperatures are ∼29.1–29.8°C. The warm, non-bleaching years were generally characterized by a CV of < 1.9 and a temperature range between 28.5 and 29.9°C. We conclude that increased mean SSTs alone are not sufficient to induce coral bleaching; a high variance in SST at marginal, lower bleaching temperatures can induce bleaching, and likewise, a low variance of such will not induce bleaching. This variance is most clearly described by the CV.     

Beyond eddy diffusivity: an alternative model for turbulent dispersion

Turbulent dispersion proceeds not only much faster but also in a qualitatively different manner than molecular diffusion. Yet, the majority of hydraulic, oceanic and atmospheric models rely on the concept of an eddy diffusivity. It is shown here that an alternative model can be developed to exhibit observed behavior. The new term in the diffusion equation, which is non-local, may be interpreted in terms of the probability density function (pdf) of the turbulent velocity. Different assumptions about this distribution lead to a family of models, one of which is the model proposed here and another, the classical Fickian model of diffusion. A connection is also made with models using fractional calculus.     

RNA-DNA ratio: an index of larval fish growth in the sea

Data on water temperature, RNA-DNA ratio, and growth of eight species of temperate marine fish larvae reared in the laboratory were fit to the equation: $$G_{pi} = 0.93{\text{ }}\operatorname{T} + 4.75{\text{ RNA - DNA}} - 18.18$$ where G_pi is the protein growth rate in % d^-1 and T is the water temperature. Water temperature and larval RNA-DNA ratio explained 92% of the variability in growth rate of laboratory-reared larvae. The model is useful over the entire range of feeding levels (starvation to excess), temperatures (2° to 20°C) and fish species studied. Estimates of recent growth of larval cod, haddock, and sand lance caught at sea based on water temperature and RNA-DNA ratio ranged from negative to 26% d^-1. These data demonstrate the importance of food availability in larval fish mortality and suggest that short-term growth under favorable conditions may be considerably higher than expected from long-term indicators. RNA-DNA ratio analysis offers new possibilities for understanding larval growth and mortality, and their relation to environmental variability.     

Depth regulation of larval marine decapod crustaceans: test of an hypothesis

This study tested the hypothesis that the dimensions and symmetry of the depth regulatory window of crustacean larvae are controlled by the level of light adaptation. Responses of first and last zoeal stages of the crab Rhithropanopeus harrisii (Gould) to different rates of pressure change were analyzed with a video system. Crabs were collected from the Neuse River estuary (North Carolina, USA) from May to September 1988. Responses were measured when larvae were adapted to light having an angular light distribution similar to that underwater at intensities ranging from one log unit above the lower phototaxis threshold to four log units higher. For both zoeal stages in darkness and at 10^-6 W m^-2, the distance larvae descend before responding to a pressure increase was much shorter than the distance they would ascend before responding to a pressure decrease. When adapted to a light level of 10^-4 W m^-2 both zoeal stages descended and ascended approximately equal distances before responding to an increase or decrease in pressure, respectively. Finally at the highest test light intensity (10^-2 W m^-2), the ascent distance was much shorter than the descent distance. These results support the hypothesis. The depth regulatory window dimensions predict an ascent in the water column upon adaptation to low light intensities and descent at high light levels. Thus Sulkin's negative feedback model provides the general mechanism of depth regulation. The effects of light adaptation on the limits of the depth regulatory window provide an additional component that negates the requirement for depth regulation at an absolute depth. The composite model can be termed the light-dependent negative feedback model of depth regulation.     

A CFD-based wind solver for an urban fast response transport and dispersion model

In many cities, ambient air quality is deteriorating leading to concerns about the health of city inhabitants. In urban areas with narrow streets surrounded by clusters of tall buildings, called street canyons, air pollution from traffic emissions and other sources may accumulate resulting in high pollutant concentrations. For various situations, including the evacuation of populated areas in the event of an accidental or deliberate release of chemical, biological and radiological agents, it is important that models should be developed that produce urban flow fields quickly. Various computational techniques have been used to calculate these flow fields, but these techniques are often computationally intensive. Most fast response models currently in use are at a disadvantage in these cases as they are unable to correlate highly heterogeneous urban structures with the diagnostic parameterizations on which they are based. In this paper, a novel variant of the popular projection method for solving the Navier–Stokes equations has been developed and applied to produce fast and reasonably accurate parallel computational fluid dynamics (CFD) solutions for flow in complex urban areas. This model, called QUIC-CFD represents an intermediate balance between fast (on the order of minutes for a several block problem) and reasonably accurate solutions. This paper details the solution procedure and validates this model for various simple and complex urban geometries.     

Reproduction of Dendronephthya hemprichi (Cnidaria: Octocorallia): year-round spawning in an azooxanthellate soft coral

Sexual reproduction in the azooxanthellate octocoral Dendronephthya hemprichi Klunzinger, 1877 was studied in Eilat (Red Sea) for 2 years beginning March 1989. D. hemprichi is a gonochoric broadcasting species. Gonads at all developmental stages were found throughout the year. Small-sized oocytes and sperm sacs, 51 to 100 μm in diameter, are highly abundant, accompanied by numerous smaller primordial gonads. These features result from continuous gametogenesis, and lead to year-round oocyte and sperm maturation and release. Gamete release was observed in the laboratory on all monitoring dates, and most of the female colonies spawned repeatedly for several successive nights. The reproductive features of D. hemprichi constitute an exception to the generalization that free-spawning reef-corals have brief and synchronized broadcast-spawning episodes. This species demonstrates early onset of first reproduction, which further increases its reproductive output. Received: 7 May 1997 / Accepted: 15 May 1997     

Feeding in a larval fish assemblage: the nutritional significance of an estuarine plume front

Gut fullness of larval fishes was used to determine the nutritional significance of an estuarine plume front off Botany Bay, SE Australia, on three days in March/April 1990. Fishes were captured in three different water masses (estuarine plume, front and shelf water), each separated by 200 m, using a 260 m mesh purse-seine net. Overall, the gut-fullness index (GFI) of 260 fish larvae combined from eight families (Gerreidae, Mugilidae, Mullidae, Sparidae, Blenniidae, Kyphosidae, Monodactylidae, Pomacentridae), was significantly greater in the plume and front water on two of the sampling occasions, but no difference was detected on the third occasion. Trends in GFI among families were inconsistent with respect to the front. The mugilid (Liza argentea) fed equally and abundantly in all water masses (gut fullness>90%), while the kyphosid (Kyphosus spp.) had a significantly greater GFI in the plume compared to the shelf water. In general, the response of GFI to the front varied between dates and amongst taxa. Diet analysis showed that mugilids selected for copepod nauplii within the plume and shelf water [alpha selectivity index (ASI) of (0.22 to 0.98)] and for harpacticoid copepods within the front (ASI=0.92), representing characteristic diets identified by canonical discriminant analysis. Kyphosids selected positively for copepod nauplii in all three water masses on both occasions (ASI>0.96). In general, diets of larval fish were taxon-specific, and responded variably to the three habitats. Comparison of diets across water masses was complicated by the large number of families, which rarely occurred in all water masses. The nutritional significance of an estuarine plume front varies between species of larval fish, and there are no obvious trends that can be applied to the larval fish community in general.     

The digestive protease,chymotrypsin, as an indicator of nutritional condition in larval red drum (Sciaenops ocellatus)

Laboratory-reared red drum (Sciaenops ocellatus) larvae were used to evaluate the potential of chymotrypsin as an indicator of nutritional condition in marine fish larvae. The response of chymotrypsin activity to food deprivation and reductions in nutrient intake was determined. Enzyme activity declined rapidly to undetectable levels in food-deprived larvae 6–18 days old. Larvae fed poor-quality live prey (starved rotifers, Brachionus plicatilis) exhibited reductions in growth (18%) and enzyme activity (84%) relative to larvae fed high-quality prey (enriched rotifers). Potential sources of variation in chymotrypsin activity unrelated to nutritional status, including diel periodicity, and exogenous enzymes sources were examined. A diel pattern in chymotrypsin activity was detected with an 8.7-fold increase in activity occurring from low to high points during a 24-h period. Highest activity levels occurred late in the day (1600 hours) and lowest activity in the morning prior to feeding (0800 hours). The estimated contribution of exogenous enzymes from prey in the digestive tract to measurements of larval enzyme activity was small, reaching a maximum of 4.1% on day 18 in well-fed larvae. Results indicate that exogenous enzymes will not lead to the misclassification of larvae in poor condition. A relationship between chymotrypsin activity and standard length was established for well-fed and food-deprived larvae that could potentially be used to determine the nutritional condition of wild-caught larvae.     

Highly repeated DNA sequences in the scleractinian coral genusAcropora: Evaluation of cloned repeats as taxonomic probes

A plasmid clone containing highly repeated DNA sequence fromAcropora formosa was used to probe slot blots of genomic DNA and Southern blots of Taq I digests from other Acroporidae. Homologous repeated DNA sequences were detected in 12 otherAcropora species, but not in three other species of Acroporidae (Astreopora sp.,Montipora digitata andM. aequituberculata). Slot-blot experiments indicated that the repeated sequences inAcropora latistella, A. tenuis, A. longicyathus andA. nobilis were distantly homologous with the clonedA. formosa repeat, whereas those inA. pulchra, A. millepora, A. valida, A. hyacinthus andA. microphthalma were highly homologous with this probe and those inA. digitifera were intermediate. Relatedness of the highhomology group toA. formosa was assessed by comparison of Taq I-digestion patterns. The predominant repeats inA. pulchra andA. hyacinthus had two Taq I sites per repeat unit (as didA. formosa), whereas repeats inA. digitifera, A. valida andA. microphthalma had one Taq I site per repeat; the pattern given byA. millepora implied that its highly homologous repeat units contained either one or two Taq I sites. Within the high-homology group, decreasing number of Taq I sites implies increasing taxonomic distance fromA. formosa. The relatedness series implied by these data differs from that based on morphological criteria.     

Mucous sheet formation on poritid corals: An evaluation of coral mucus as a nutrient source on reefs

The production, release, and subsequent consumption of coral mucus on reefs has been portrayed as a potential pathway for the transfer of coral and zooxanthellae production to other reef organisms. However, reported mucus production rates and analyses of nutritional value vary widely. Poritid corals provide a test system to measure mucus production because they produce mucous sheets which can be collected quantitatively. Fluid mucus and mucous sheets were collected fromPorites astreoides, P. furcata, P. divaricata during 1986 and 1987 on reefs in the San Blas Islands, Panama, La Parguera, Puerto Rico and the Florida Keys, USA. Mucus samples were collected from Indo-pacific poritids (P. australiensis, P. lutea, P. lobata, andP. murrayensis) on the Great Barrier Reef during 1985. Biochemical analyses of the fluid mucous secretions, and the derivative mucous sheet, indicate that the mucus is primarily a carbohydrateprotein complex.Porites fluid mucus had a mean caloric content of 4.7 cal mg^–1 ash-free dry weight (AFDW), while mucous sheets contained 3.5 cal mg^–1 AFDW. Sixty-eight percent of the mucous sheet was ash, while fluid mucus was 22% ash. The high ash and low organic contents suggest that mucous sheets have a low nutritional value. C:N ratios varied (range 6.9 to 13.7 for fluid mucus, and 4.8 to 5.9 for mucous sheets), but were similar to typical C:N ratios for marine organisms. Bacterial numbers and chlorophyll a concentrations were higher on mucous sheets than in the surrounding water. Although bacteria aggregate on mucous sheets, bacteria accounted for less than 0.1% of the carbon and nitrogen content of the mucous sheet. Lower C:N ratios in aged mucus, i.e. mucous sheets versus fluid mucus, were attributed to a loss of carbon rather than an increase in nitrogen. Mucous sheet production accounts for a small proportion (< 2% gross photosynthesis) of published values for coral production. In the San Blas Islands, Panama,P. astreoides produced mucous sheets at a rate of 1.5 g C m^–2 y^–1 and 0.3 g N m^–2 y^–1.P. astreoides andP. furcata produced mucous sheets with a lunar periodicity and may provide approximately monthly pulses of carbon and nitrogen to the reef food-web. However, the low annual production rates suggest that mucous sheets make a small contribution to overall energy flow on coral reefs.     

Movements between coral colonies in Trapezia ferruginea (Crustacea: Brachyura), an obligate symbiont of scleractinian corals

Trapezia ferruginea appears to depend entirely on its coral host (Pocillopora spp.) for shelter and food. Field and laboratory experiments have shown that the brightly colored crabs move between colonies at night. Analysis of movements in crabs randomly distributed among randomized Pocillopora damicornis colonies under laboratory conditions showed that after 6 days there was a significant increase in the number of heterosexual pairs (P<0.001) and a significant correlation between the number of crabs and the size of colonies (P=0.003), as well as between the size of crabs and the size of colonies (P=0.020) — conditions which are also observed in the field. No such correlations were obtained (P>0.05) in a similar experiment where very intense predation by carnivorous fishes was present. This host selection by adults appears to be elicited by the lack of a suitable partner and the inadequate size of their established territory in the colony.     

A chromatophore system in the hermatypic,deep-water coral Leptoseris fragilis (Anthozoa: Hexacorallia)

Ultrastructural evidence is presented of a chromatophoresystem in the zooxanthellae containing hermatypic, deep-water coral Leptoseris fragilis (Milne Edwards and Haime). It consists of multilobed cells which mainly occupy the intercellular space of the oral gastrodermis. The cellular processes are filled with electron-dense granules up to 1-m-long and 0.5-m-wide. Within the cytoplasm an elaborate system of microtubules is established. The ramifications of the pigment cells, containing the pigment granules, form a dense and nearly continuous layer close to the overlying zooxanthellae. It is speculated that host pigments may transform the violet portion of the incident light into longer wavelengths, thus increasing the photosynthetic efficiency of the zooxanthellae.     

Population structure of an exploited benthic cnidarian: the case study of red coral (Corallium rubrum L.)

Octocorals are an important part of many ecosystems as they add three-dimensional complexity to the benthos and thereby increase biodiversity. The Mediterranean red coral (Corallium rubrum, L. 1758) is a longevous octocoral that is harvested commercially, yet natural and anthropogenic influences on its population size structure are little understood. This study found that some harvested red coral populations had a significantly different size structure when compared to populations at the nearby Marine Protected Area (MPA) of Medas Islands at the Spanish Costa Brava (NW Mediterranean). Eighty-nine percent of the red corals in the harvested Costa Brava area are less than 10 years old and 96% of all colonies have not yet grown more than second-order branches. The size/age distribution of the harvested population is notably skewed towards younger and smaller colonies. Thus, although red coral is still abundant, its population structure is strongly distorted by harvesting. The results confirm that MPAs are useful to distinguish between anthropogenic and natural influences on population structure. However, 14 years of protection appears to be an insufficient recovery time for a longevous octocoral population such as red coral.     

Using an individual-based model to quantify scale transition in demographic rate functions: Deaths in a coral reef fish

Scientifically informed population management requires quantitatively accurate demographic rate functions that apply at the spatial scale at which populations are actually managed, but practical constraints confine most field measurements of such functions to small study plots. This paper employs an individual-based population growth model to extrapolate the death rate function in a well-studied coral reef fish, the bridled goby Coryphopterus glaucofraenum, from the scale of coral reef “cells” at which it was measured to the larger scale of an entire coral reef. Density dependence in the whole-reef function actually proves stronger than in the local function because high goby density occasionally arises in local patches with few refuges from predators, producing very high mortality there. This IBM-based approach extends the reach of scale transition theory by examining considerably more realistic models than standard analytical methods can presently handle.