Genetic variability and relationships among geographically widely separated populations of Petitia amphophthalma (Polychaeta: Syllidae). Results from RAPD-PCR investigations

An analysis of the population genetics of the meiofaunal polychaete Petitia amphophthalma Siewing, 1956, in which the RAPD-PCR method was applied to 103 individuals from eight populations, some of them very far apart (Atlantic: Florida, Tenerife, France; Mediterranean: two Greek islands, Tunisia; Red Sea: Egypt), gave closely reproducible results. In the band patterns produced with 13 decamer primers, a total of 195 genetic characters was detected. The data were evaluated by a number of methods, including the cluster programs UPGMA, WPGMA and neighbour-joining. The detected genetic distances between the populations vary between 58.9 and 66.6, but 97% of the genetic characters, although polymorphic, are found in at least two populations and usually in all the others as well. Phenograms of the analyses find four population clusters [Florida, France (Atlantic), the Mediterranean and Tenerife]. They are, however, not completely congruent and show low bootstrap values at the junction points of the clusters (with the exception of the Tenerife cluster). Mediterranean P. amphophthalma form a cohesive population, although within it the genetic distances are graded in parallel with the geographic distances between the sites. The colonization of Tenerife, an island of relatively recent volcanic origin, can be taken as evidence that this meiofaunal species can become dispersed not only along coastlines but also across expanses of open water. However, the severely restricted variability of these populations implies that in this case a founder effect has operated, and that transport over open water is not a routine event but extremely rare. The absence of the species on the Australian coast and, for instance, on the Galapagos Islands indicates that there has been no continuous gene flow across the oceans. The idea that all the populations investigated belong to one cosmopolitan species is discussed. Received: 17 October 1997 / Accepted: 15 April 1998     

Spatial synchrony in coral reef fish populations and the influence of climate

We investigated spatial patterns of synchrony among coral reef fish populations and environmental variables over an eight-year period on the Great Barrier Reef, Australia. Our aims were to determine the spatial scale of intra- and interspecific synchrony of fluctuations in abundance of nine damselfish species (genus Pomacentrus) and assess whether environmental factors could have influenced population synchrony. All species showed intraspecific synchrony among populations on reefs separated by < or =100 km, and interspecific synchrony was also common at this scale. At greater spatial scales, only four species showed intraspecific synchrony, over distances ranging from 100-300 km to 500-800 km, and no cases of interspecific synchrony were recorded. The two mechanisms most likely to cause population synchrony are dispersal and environmental forcing through regionally correlated climate (the Moran effect). Dispersal may have influenced population synchrony over distances up to 100 km as this is the expected spatial range for ecologically significant reef fish dispersal. Environmental factors are also likely to have synchronized population fluctuations via the Moran effect for three reasons: (1) dispersal could not have caused interspecific synchrony that was common over distances < or =100 km because dispersal cannot link populations of different species, (2) variations in both sea surface temperature and wind speed were synchronized over greater spatial scales (>800 km) than fluctuations in damselfish abundance (< or =800 km) and were correlated with an index of global climate variability, the El Ni?o-Southern Oscillation (ENSO), and (3) synchronous population fluctuations of most damselfish species were correlated with ENSO; large population increases often followed ENSO events. We recorded regional variations in the strength of population synchrony that we suspect are due to spatial differences in geophysical, oceanographic, and population characteristics, which act to dilute or enhance the effects of synchronizing mechanisms. We conclude that synchrony is common among Pomacentrus populations separated by tens of kilometers but less prevalent at greater spatial scales, and that environmental variation linked to global climate is likely to be a driving force behind damselfish population synchrony at all spatial scales on the Great Barrier Reef.     

Speciation of nitrogen in the coral reef sedimentary environment of Lakshadweep archipelago,Indian ocean

This paper focuses on the spatial distributional profiles of different species of the important micronutrient element, nitrogen (nitrite, nitrate and total nitrogen) in various coral-reef sedimentary environment of Lakshadweep Archipelago. The relative abundance of the three forms of nitrogen was in the order, total-N???nitrate-N???nitrite-N. Relatively very low levels of nitrite in the different microenvironments of the islands are an indication of a higher rate of nitrification, so as to produce thermodynamically most stable form of nitrogen, namely nitrate under the condition of well-oxygenated shallow coastal/lagoon waters. A lagoon-ward enrichment pattern of total nitrogen in the lagoon transects of Agathy, Minicoy, Kadamath and Kiltan Islands also reflected the fact that the rate and space available for nitrogen fixation in shallow zones of the lagoon are high. Further, the nitrogenous waste materials produced from the reefs and surrounding environments have limited exchange with the sea, and all these factors, together with the organic nitrogen retention capacity of sediment types, contribute to total nitrogen.     

High frequency of extra-pair paternity in Swedish pied flycatchers revealed by allozyme electrophoresis and DNA fingerprinting

Summary We used two genetic techniques to study multiple parentage in the pied flycatcher (Ficedula hypoleuca). Allozyme electrophoresis of 131 nestlings from 22 clutches sampled in 1982 and 1987 showed that one nestling had a mismatched allele compared with its putative parents. In one additional nest the devitation from Mendelian inheritance of parental genotypes suggested extra-pair paternity. The calculated probability of detecting multiple paternity from the genetic variation at four loci was 0.115. The estimated population frequency of extra-pair fertilization (EPF) was 13%, based on two mismatches and the probability of detecting multiple paternity. The seven families (n = 38 nestlings) in the 1987 sample were also analyzed by DNA fingerprinting using the M13 and Jeffrey's 33.15 probes. Overall, 24% (n = 9) of the nestlings analyzed were genetically inconsistent with their putative father, with EPF occurring in three (43%) of the seven clutches. One nestling originated by intraspecific brood parasitism. Comparison of the two techniques using the same samples showed that allozyme electrophoresis has a resolution only 11% of that of DNA fingerprinting, close to the calculated probability of detecting multiple paternity (0.115). Both techniques suggest that extra-pair fertilization is relatively common in the Swedish populations investigated compared to the low frequency reported from a Norwegian population. Correspondence to: H.P. Gelter at the present address     

Coexistence: Symbiotic sharing of feeding territories and algal food by some coral reef fishes from the Western Indian Ocean

A symbiotic relationship between a damselfish (Stegastes fasciolatus) and 2 surgeonfishes (Acanthurus lineatus and A. leucosternon) is described. The damselfish, which is about 1/10 the size of the surgeonfishes, is concentrated in, and appears to prefer to be in, the feeding areas of the surgeonfishes. There is an average of one adult damselfish per adult surgeonfish feeding area. All 3 species defend their feeding areas against conspecifics and various other fishes that have similar diets, but there are few aggressive interactions between the cohabitants. Most of the interspecific defense of cohabited areas is provided by the surgeonfishes. The cohabitant species eat the same types of benthic microalgae, but only the damselfish eats microcrustaceans. It appears that the net cost to a surgeonfish of having a damselfish in its feeding area is very low because (1) biomass density of the damselfish is low, (2) it uses some food that the surgeonfishes do not use, and (3) it makes a small contribution to the defense of shared feeding areas. Even if there is a cost to the surgeonfish, the small size of the damselfish would allow it to take shelter from the surgeonfish, thus making it too costly for the surgeonfish to exclude it. Such cohabitation relationships, which may be quite common among reef fishes, represent a means by which the coexistence of species that use the same limiting resources is achieved.     

Reef size and isolation determine the temporal stability of coral reef fish populations

Temporal variance in species abundance, a potential driver of extinction, is linked to mean abundance through Taylor's power law, the empirical observation of a linear log-log relationship with a slope between 1 and 2 for most species. Here we test the idea that the slope of Taylor's power law can vary both among species and spatially as a function of habitat area and isolation. We used the world's most extensive database of coral reef fish communities comprising a 15-year series of fish abundances on 43 reefs of Australia's Great Barrier Reef. Greater temporal variances were observed at small and isolated reefs, and lower variances at large and connected ones. The combination of reef area and isolation was associated with an even greater effect on temporal variances, indicating strong empirical support for the idea that populations on small and isolated reefs will succumb more frequently to local extinction via higher temporal variability, resulting in lower resilience at the community level. Based on these relationships, we constructed a regional predictive map of the dynamic fragility of coral reef fish assemblages on the Great Barrier Reef.     

Extension rate: A primary control on the isotopic composition of West Indian (Jamaican) scleractinian reef coral skeletons

Large variations in skeletal microarchitecture, and in the carbon and oxygen isotopic composition of the skeleton, exist within single calices and over the surfaces of single colonies of various species of West Indian (Jamaican) scleractinian reef corals. Rapidly extending parts of individual colonies are depleted in both C¹³ and O¹⁸ regardless of the abundance of zooxanthellae in the overlying tissues. We suggest that this relationship is due to active translocation of organic compounds to sites of rapid calcification. Considerable variation in isotopic composition is found in skeletons of different specimens of the same species even when the skeletons are sampled in a consistent manner, come from the same locality and depth, and have a comparable growth history. The isotopic composition of the scleractinian skeleton is vastly more complex than has heretofore been realized.     

Spatial variation of phosphorus fractionation in the coral reef sediments of Lakshadweep Archipelago,Indian Ocean

Surface sediments were collected from the shore and lagoons of Kavaratti, Kadamat and Agatti islands of Lakshadweep Archipelago during May 2015 and analysed for the spatial distribution of the micronutrient element, phosphorus. Phosphorus was separated by sequential extraction procedure into five fractions – exchangeable (Ex-P), iron bound, (Fe-P), calcium bound (Ca-P), organic and residual fractions (OP) and total phosphorus (TP). The average relative contribution of each P species to TP was: OP?>?Ca –P?>?Ex – P?>?Fe – P. The high concentration of organic and residual phosphorus (87–96%) compared to inorganic phosphorus is particularly evident at stations characterised by higher total phosphorus concentrations. Among the three forms of IP in the sediments, Ca-P was dominant at all stations. The OC/OP ratio ranged from 3 to 163 in the sediments, suggesting that the organic matter in sediments had been subjected to degradation. Hence, the major contribution towards organic and residual phosphorus form is from the residual fraction comprising biologically resistant or non-available phosphorus form composed of refractory materials. The concentration of phosphorus reported in the present study is higher than that of the earlier studies in Lakshadweep, indicating a terrestrial and anthropogenic in?uence on the sediment.     

Variation in the genetic composition of coral (Pocillopora damicornis and Acropora palifera) populations from different reef habitats

The genetic structure of populations of the corals Pocillopora damicornis and Acropora palifera was examined in three habitats at One Tree Island during March and April 1993, using electrophoretically detectable variation at six allozyme loci. There were significant genetic differences among populations of P. damicornis within each of the reef crest, lagoon and microatoll habitats. The level of differentiation among populations was similar in each of the habitats. Differences between populations of P. damicornis from lagoon and microatolls were no greater than that within habitats, but genetic differentiation of these from crest populations was much higher. There was no difference in the genetic composition of A. palifera populations within or between the lagoon and microatolls, the only habitats where this species was found. Both coral species had observed:expected (G _O:G_E) genotypic diversity rations >0.80, indicating predominantly sexual reproduction. These data, the high genotype diversity and general conformance of genotype frequencies to those expected under conditions of Hardy-Weinberg, suggested panmixis at each site. The high degree of sexual reproduction in the P. damicornis populations is unusual for a species where asexual reproduction has been the dominant mode of reproduction reported to date. Gene flow in both species was considerable between the lagoon and the closed microatolls. The genetic differences between populations of P. damicornis in these habitats and the reef crest may reflect the relative isolation of all populations within the closed One Tree Lagoon from those outside. However, local currents appear to offer effective means of dispersal between the habitats, suggesting that the genetic differences result from natural selection in the different environments within One Tree Lagoon and the reef crest.     

Microbial associations in sponges. I. Ecology,physiology and microbial populations of coral reef sponges

Illumination, current strength and physical turbulence influence the distribution of 4 tropical sponges. Three sponges with cyanobacteria in exposed tissues grow only in poen shallow habitats: Pericharax heteroraphis in moderate-current, lowturbulence regions on the reef slope; Jaspis stellifera in low-current, moderate-turbulence regions of the outer reef flat; and Neofibularia irata in moderate-current, high-turbulence areas below the reef crest. Ircinia wistarii contains no cyanobacteria and occurs in deeper, strong-current, high-turbulence regions. N. irata agressively overgrows neighbouring corals and its growth form is influenced by the current strength. The sponges efficiently filter bacteria from the water. The efficiency is related to the aquiferous structure, particularly the size of choanocyte chambers, and is unrelated to the existing bacterial populations in sponge tissue. The numbers of bacteria associated with the sponges are proportional to the sponge mesohyl density, with the dense sponges J. stellifera and I. wistarii containing many bacteria whereas P. heteroraphis is not dense and has few bacteria.     

Comparative lipid dynamics of euphausiids from the Antarctic and Northeast Pacific Oceans

To better understand the feeding and reproductive ecology of euphausiids (krill) in different ocean environments, lipid classes and individual lipid components of four different species of euphausiids from Northeast Pacific (temperate species) and Southern Ocean (Antarctic species) were analyzed in animals from multiple life stages and seasons. The dominant krill species in the Northeast Pacific Euphausia pacifica and Thysanoessa spinifera, were compared to the two major Antarctic species, Euphausia superba and E. crystallorophias. Analysis comprised total lipid and lipid classes together with individual fatty acid and sterol composition in adults, juveniles, and larvae. Antarctic krill had much higher lipid content than their temperate relatives (10–50 and 5–20% of dry mass for Antarctic and temperate species, respectively) with significant seasonal variations observed. Phospholipids were the dominant lipid class in both temperate krill species, while neutral storage lipids (wax esters and triacylglycerols for E. crystallorophias and E. superba, respectively) were the major lipid class in Antarctic krill and accounted for up to 40% of the total lipid content. Important fatty acids, specifically 16:0, 18:1ω9, 20:5ω3, and 22:6ω3, were detected in all four krill species, with minor differences between species and seasons. Detailed lipid profiles suggest that krill alter their lipid composition with life stage and season. In particular, larval Antarctic krill appear to utilize alternate food resources (i.e., sea-ice associated organisms) during austral winter in contrast to juveniles and adults (i.e., seston and copepods). Lipid dynamics in krill among krill in both systems appear closely linked to their life cycle and environmental conditions including food availability, and can provide a more complete comparative ecology of euphausiids in these environmentally distinct systems.     

Genetic structure of two species of Montipora on a patch reef: conflicting results from electrophoresis and histocompatibility

Spatial patterns of graft acceptance and rejection were different for two species of the coral Montipora from Kaneohe Bay, Hawaii. Electrophoretically distinct tissues were capable of fusing, indicating that clonal identity is not necessarily inferred by acceptance of grafts. For M. dilatata, 18 of 40 cases of fusion were between dissimilar genotypes and for M. verrucosa, 3 of 7 cases. In one case, fusion occurred between genotypes which shared no alleles. A greater understanding of the genetics of invertebrate immunology is required before histocompatibility criteria can be used independently to assess population genetic structure with confidence.     

Population structure of the black tiger prawn, Penaeus monodon, among western Indian Ocean and western Pacific populations

We examined the population structure of the black tiger prawn, Penaeus monodon Fabricius, 1798, in the Indo-West Pacific by analyzing the geographic distribution of elongation factor 1-alpha intron sequences from specimens collected during the winter and spring of 1997. Both the molecular phylogeny of alleles and F-statistics indicated very strong differentiation between populations from the western Indian Ocean and western Pacific. This pattern is concordant with other recent studies of marine species in this region, implying that the Indo-Australian Archipelago represents a biogeographic break between populations in the Indo-West Pacific. F _ST-values among populations in the western Indian Ocean also indicate structure within this region, whereas no structure was found among western Pacific populations. Nucleotide diversity was significantly lower in the western Indian Ocean populations than in the western Pacific, implying that the populations have regional differences in demographic history. Received: 16 November 1998 / Accepted: 26 May 1999     

Nitrate uptake by the reef coral Diploria strigosa: effects of concentration, water flow, and irradiance

The effects of several environmental variables on net nitrate uptake by the scleractinian coral Diploria strigosa were investigated under controlled flow conditions. D. strigosa exhibited nitrate uptake rates ranging from 1 to 5 nmol cm⁻² h⁻¹ at ambient concentrations of 0.1–0.3 μM that are typical of oligotrophic reefs such as Bermuda. Net uptake ceased at approximately 0.045 μM. The uptake was positively correlated with concentration up to a saturation concentration of approximately 3 μM. The uptake was also positively correlated with water velocity at 1 μM, but not at 6 μM, suggesting diffusional limitation at low concentrations and kinetic limitation at higher concentrations. Nitrate uptake by D. strigosa was not affected by light intensity or time of day, but was almost completely inhibited by 48 h exposure to ammonium levels found on many reefs.     

Sexual reproduction and settlement of the coral reef spongeChalinula sp. from the Red Sea

Characteristics of the sexual reproduction and larval settlement of the haplosclerid spongeChalinula sp., which inhabits the shallow waters (1 to 6 m) of Eilat, Red Sea, were investigated from September 1985 through to November 1987. This species was found to be a simultaneous hermaphroditic brooder, hence gonochorism is not the rule in the order Haplosclerida. Brooding always takes place in special brooding chambers. While the oocytes in the brooding chambers are among the largest known in sponges (355±37µm), the spermatic cysts distributed in the choanosome are among the smallest known for this phylum (average 26±7µm).Chalinula sp. breeds throughout the year and in experiments most larvae (74%) settled within 1 to 8 h post-release, generally within 4.5 h. Metamorphosis from larval shape to a sessile sponge lasts 1 to 6 h. Thus, larvae had a short swimming period, settled fast, and metamorphosed rapidly (within 1 to 6 h). The large size of the larvae may contribute to their ability to rapidly reorganize their body shape into that of a sessile sponge. In addition, the existence of already differentiated choanocyte chambers in the larvae, facilitates fast construction of the water filtration system in the newly settled sponges. The reproductive and larval characteristics ofChalinula sp. enable the larvae to settle on any vacant space in the reef, which may explain its abundance in the Red Sea.     

Genetic diversity,clonality and connectivity in the scleractinian coral Pocillopora damicornis: a multi-scale analysis in an insular,fragmented reef system

Clonality and genetic structure of the coral Pocillopora damicornis sensu lato were assessed using five microsatellites in 12 populations from four islands of the Society Archipelago (French Polynesia) sampled in June 2008. The 427 analysed specimens fell into 132 multilocus genotypes (MLGs), suggesting that asexual reproduction plays an important role in the maintenance of these populations. A haploweb analysis of ITS2 sequences of each MLG was consistent with all of them being conspecific. Genetic differentiation was detected both between and within islands, but when a single sample per MLG was included in the analyses, the populations turned out to be nearly panmictic. These observations provide further evidence of the marked variability in reproductive strategies and genetic structure of P. damicornis throughout its geographic range; comparison with results previously obtained for the congeneric species Pocillopora meandrina underlines the importance of life history traits in shaping the genetic structure of coral populations.     

Genetic differentiation among populations of a broadcast spawning soft coral, Sinularia flexibilis, on the Great Barrier Reef

The genetic structure of 12 reef populations of the soft coral Sinularia flexibilis (Octocorallia, Alcyoniidae) was studied along the Great Barrier Reef (GBR) at a maximum separation of 1,300 km to investigate the relative importance of sexual and asexual reproduction, genetic differentiation and gene flow among these populations. S. flexibilis is a widely distributed Indo-Pacific species and a gamete broadcaster that can form large aggregations of colonies on near-shore reefs of the GBR. Up to 60 individuals per reef were collected at a minimum sampling scale of 5 m at two sites per reef, from December 1998 to February 2000. Electrophoretic analyses of nine polymorphic allozymes indicated that genotypic frequencies in most populations and loci did not differ significantly from those expected from Hardy–Weinberg predictions. Analysis of multi-locus genotypes indicated a high number of unique genotypes (N _go) relative to the number of individuals sampled (N) in each reef population (range of 0.69–0.95). The maximum number of individuals likely to have been produced sexually (N*) was similar to the number of individuals sampled (i.e. N*:N ˜ 1), suggesting that even repeated genotypes may have been produced sexually. These results demonstrated a dominant role of sexual reproduction in these populations at the scale sampled. Significant genetic differentiation between some populations indicated that gene flow is restricted between some reefs (F _ST=0.026, 95% CI= 0.011 − 0.045) and even between sites within reefs (F _ST=0.041, 95% CI=0.027 − 0.055). Nevertheless, there was no relationship between geographic separation and genetic differentiation. Analyses comparing groups of populations showed no significant differentiation on a north-south gradient in the GBR. The pattern in the number of significant differences in gene frequencies in pairwise population comparisons, however, suggested that gene flow may be more restricted among inner-shelf reef populations near to the coast than among mid/outer-shelf populations further from the coast. Received: 10 July 2000 / Accepted: 5 October 2000     

Genetic and taxonomic relationships among Northeastern Atlantic and Mediterranean populations of the soft coral Alcyonium coralloides

Species boundaries among taxa of colonial marine organisms are often obscured by intraspecific morphological and ecological variation; genetic comparisons of recognized “ecotypes” frequently reveal them to be reproductively isolated species. Based on morphological similarities, it has been proposed that the Mediterranean soft coral Alcyonium (=Parerythropodium) coralloides Pallas, 1766 and its Atlantic congener A. hibernicum belong to one highly variable and geographically widespread species, A. coralloides. I collected A. coralloides from ten Atlantic and three Mediterranean locations in 1990 and 1994, and used differences in colony form, substrate use and color to separate them into five distinct morphotypes. Two occur sympatrically in the Mediterranean (M1, M2) and three have overlapping distributions in the Atlantic (A1, A2, A3). I used allozyme electrophoresis to compare morphotypes genetically at 14 enzyme loci. Where two morphotypes occurred sympatrically, fixed allelic differences at 4 to 6 loci indicated reproductive isolation. In all but one pairwise comparison (M1 and A2), morphotypes whose ranges did not overlap were also separated by large genetic distances. From these results I suggest that the five morphotypes represent four distinct species. A. coralloides comprises two morphotypes (M1, A2) with relatively high genetic identity. A. hibernicum (=A1) is reproductively isolated from A. coralloides and should be retained as a valid species; levels of genetic diversity and heterozygosity within populations support the absence of outcrossing in this reportedly asexual species. Morphotypes M2 and A3 are also reproductively isolated from A. coralloides; they are taxonomically distinct from but belong to the same phylogenetic clade as A. hibernicum. Although preliminary observations suggest that differences in reproductive timing maintain species boundaries in sympatry, wider geographic sampling will be required to elucidate the events leading to speciation within this species complex. Received: 8 May 1998 / Accepted: 8 October 1998