Rapid Assessment of Risks to a Mobile Marine Mammal in an Ecosystem-Scale Marine Protected Area

Abstract:  Ecosystem-scale networks of marine protected areas (MPAs) are important conservation tools, but their effectiveness is difficult to quantify in a time frame appropriate to species conservation because of uncertainties in the data available. The dugong ( Dugong dugon ) is a mobile marine species that occurs in shallow inshore waters of an ecosystem-scale network of MPAs (the Great Barrier Reef World Heritage Area [GBRWHA]). We developed a rapid approach to assess risk to dugongs in the region and evaluate options to ameliorate that risk. We used expert opinion and a Delphi technique to identify and rank 5 human factors with the potential to adversely affect dugongs and their sea grass habitats: netting, indigenous hunting, trawling, vessel traffic, and poor-quality terrestrial runoff. We then quantified and compared the distribution of these factors with a spatially explicit model of dugong distribution. We estimated that approximately 96% of habitat of high conservation value for dugongs in the GBRWHA is at low risk from human activities. Using a sensitivity analysis, we found that to decrease risk, commercial netting or indigenous hunting had to be reduced in remote areas and the effects of vessel traffic, terrestrial runoff, and commercial netting had to be reduced in urban areas. This approach enabled us to compare and rank risks so as to identify the most severe risks and locate specific sites that require further management attention.     

The unusual metal status of the dugong Dugon dugon

Using atomic absorption spectroscopy, exceptionally high concentrations of iron (778 to 82,363 g g⁺¹ dry weight) and zinc (219 to 4,183 g g⁺¹ dry weight) were detected in the livers of Dugong dugon (Müller) from north Queensland compared with reported values for other marine mammals from other areas of the world. Levels of copper (9.1 to 608 g g⁺¹ dry weight), cadmium (<0.1 to 59 g g⁺¹ dry weight), cobalt (0.5 to 72 g g⁺¹ dry weight) and silver (0.2 to 39 g g⁺¹ dry weight) in the liver, and cadmium (0.2 to 209 g g⁺¹ dry weight) in the kidney were also relatively high in several samples, whilst concentrations of nickel, lead and chromium were consistently below the limits of detection in all tissues. Manganese concentrations, in all tissues examined, were generally comparable with those reported from other marine mammals. Tissue concentrations of a number of metals varied with the age of the dugong. Levels of iron, zinc, cadmium and cobalt in the liver zinc and cadmium in the kidney, and iron in the muscle were significantly positively correlated with age. Copper and manganese in both liver and kidney were negatively correlated with age. Large deposits of the iron-rich pigment, haemosiderin, the quantity of which also tended to increase with age, was a conspicuous feature of the livers of all the post-natal dugongs examined histologically. It seems unlikely that the unusual metal status of the dugong reflects anthropogenic activities, since many individuals were collected in remote areas far from major sites of urbanization and industrialization. Seagrasses, the major food of dugongs, were collected from various north Queensland dugong habitat-areas and analysed. Very high concentrations of iron but low levels of copper were detected. The significance of such dietary imbalances and their possible influence on the metal status of the dugong were therefore considered.     

Insulative capacity of the integument of the dugong (Dugong dugon): thermal conductivity,conductance and resistance measured by in vitro heat flux

Extant sirenians are restricted to warm waters, presumably due to their low metabolism and poor thermoregulatory capacity, including thin blubber. When subjected to winter waters, Florida manatees (Trichechus manatus latirostris) migrate to warm areas, but dugongs (Dugong dugon) do not and instead live year-round in winter waters as cool as 15–18 °C. Dugongs appear to be more active than manatees and may have higher metabolic rates, but little is known about thermal energetics or the insulative properties of their integument. This study investigated the physical and thermal properties of whole samples of dugong integument, i.e. epidermis, dermis and hypodermis (blubber) sampled from fresh dugong carcasses collected from 2004 to 2012 in Moreton Bay (27.21°S, 153.25°E). Physico-chemical properties (thickness, density and lipid content) of each component tissue layer were measured. Thermal conductance (C) and conductivity (k) were measured for each tissue layer through in vitro temperature flux experiments within an insulated chamber. C and k were higher for dermis (25.7 ± 1.2 W m^?2 K^?1, 0.43 ± 0.02 W m^?1 K^?1, respectively, n = 21) than blubber (24.3 ± 2.4 W m^?2 K^?1, 0.31 ± 0.01 W m^?1 K^?1, n = 21), suggesting that blubber, with higher density and lipid content, affords better insulation. However, because the dermis contributes 65 % of integumentary thickness, both layers contribute significantly to insulation. The integument of dugongs is a poorer insulator compared to many cold-water marine mammals, but the greater thickness of its dermal layer means that despite its relatively thin blubber, its integumentary insulation is similar to warm-water dolphins of similar body size.     

Elemental composition of a tusk of a dugong, Dugong dugon, from Exmouth, Western Australia

Element analysis of the annual increments in a longitudinal section from the tusk of a female dugong Dugong dugon (Müller) from Exmouth, Western Australia, was carried out by X-ray fluorescence-imaging, inductively coupled plasma-atomic emission spectrometry (ICP-AES) and inductively coupled plasma-mass spectrometry (ICP-MS). Nine elements (Ba, Ca, Fe, Li, Mg, Na, P, Sr and Zn) were present in concentrations amenable to determination by these techniques. Most elements revealed both long-term trends and shorter, year-to-year, variations. For example, sodium concentrations increased from 0.55 to 0.72% with the age of the dugong. Strontium concentrations (mean 0.17%) were closely correlated (r = 0.86) with those of barium (mean 4.5 mg kg⁻¹). Zinc concentrations increased from ∼70 to 170 mg kg⁻¹ with dugong age, but also showed shorter-term fluctuations of ∼30 mg kg⁻¹ that were correlated (r = 0.41) with mean annual Fremantle sea level (a measure of the Southern Oscillation Index and strength of the Leeuwin Current). The concentrations of the elements and correlations with year and between pairs of elements are discussed. Received: 10 January 1997 / Accepted: 21 April 1997     

Observations of dugong reproductive behavior in Trang Province,Thailand: further evidence of intraspecific variation in dugong behavior

The seagrass beds at Muk Island and Talibong Island in Thailand are important areas for dugong (Dugong dugon) feeding and reproduction. We used opportunistic observations during aerial surveys to investigate dugong mating behavior in shallow water areas near Talibong Island on three different days. The mating pattern was categorized by five stages: (1) following: the male followed the female, (2) approaching and stimulating: the male approached and muzzled the female, (3) pairing: both male and female swam in parallel, ventral to ventral or dorsal to dorsal side, (4) mounting: the male copulated with the female, and (5) separating: the male and female swam in different directions. Parental care of calves included one observation of a cow embracing her neonatal calf by the flippers.     

Defining length-at-metamorphosis in fishes: a multi-character approach

The present study attempts to highlight the value of multi-character approaches for defining thresholds in fish ontogeny, like the onset of the juvenile period. We developed techniques to objectively define the transition from larval to juvenile development using morphometric as well as morphological characters and exemplify the multi-character approach on newly settled white sea-breams (Diplodus sargus sargus) collected from the eastern Mediterranean. The morphometric analysis was based on principles of multivariate allometry whereas the analysis of morphology, on assigning a suite of selected characters (here related to external morphology and osteological development) into larval, transforming and juvenile states. The size-at-change in multivariate allometric growth (L _m) is considered here to denote mean length-at-metamorphosis. An almost perfect match is demonstrated between L _m (‘multivariate morphometry’) and mean size-at-morphological change (‘multivariate morphology’) in white sea-bream.     

Leveraging social media and deep learning to detect rare megafauna in video surveys

Deep learning has become a key tool for the automated monitoring of animal populations with video surveys. However, obtaining large numbers of images to train such models is a major challenge for rare and elusive species because field video surveys provide few sightings. We designed a method that takes advantage of videos accumulated on social media for training deep-learning models to detect rare megafauna species in the field. We trained convolutional neural networks (CNNs) with social media images and tested them on images collected from field surveys. We applied our method to aerial video surveys of dugongs (Dugong dugon) in New Caledonia (southwestern Pacific). CNNs trained with 1303 social media images yielded 25% false positives and 38% false negatives when tested on independent field video surveys. Incorporating a small number of images from New Caledonia (equivalent to 12% of social media images) in the training data set resulted in a nearly 50% decrease in false negatives. Our results highlight how and the extent to which images collected on social media can offer a solid basis for training deep-learning models for rare megafauna detection and that the incorporation of a few images from the study site further boosts detection accuracy. Our method provides a new generation of deep-learning models that can be used to rapidly and accurately process field video surveys for the monitoring of rare megafauna.     

Fluoride distribution in groundwater and survey of dental fluorosis among school children in the villages of the Jhajjar District of Haryana,India

Fluoride concentration of groundwater reserves occurs in many places in the world. A critical area for such contamination in India is alluvial soil of the plain region, consisting of five blocks (Jhajjar, Bahadurgarh, Beri, Matanhail, and Sahalawas) of the Jhajjar District adjacent to the National Capital Territory of India, New Delhi. The purpose of this study was to assess the association between water fluoride levels and prevalence of dental fluorosis among school children of the Jhajjar District of Haryana, India. The fluoride content in underground drinking water sources was found to vary in villages. Hence, the villages were categorized as high-fluoride villages (1.52–4.0 mg F/l) and low/normal-fluoride villages (0.30–1.0 mg F/l). The source of dental fluorosis data was school-going children (7–15 years) showing different stages and types of fluorosis who were permanent resident of these villages. The fraction of dental fluorosis-affected children varied from 30% to 94.85% in the high-fluoride villages and from 8.80% to 28.20% in the low/normal-fluoride villages. The results of the present study revealed that there existed a significant positive correlation between fluoride concentration in drinking water and dental fluorosis in high-fluoride villages (r = 0.508; p < 0.001) and insignificant correlation in low-fluoride villages.     

Marine Gammaridea (Crustacea: Amphipoda) from the Indian region. Family Ampithoidae

This paper deals with 6 species of marine gammaridean amphipods belonging to the family Ampithoidae. The specimens described were collected from Mandapam (Gulf of Mannar), India and Thankasserry (Quilon, Kerala), India. The collection includes 3 new species, namely Ampithoe (Ampithoe) serraticauda, Ampithoe (Pleonexes) auriculata and Cymadusa imbroglio. Ampithoe (Ampithoe) kergueleni Stebbing (1888) is a new record for this region, while Ampithoe (Ampithoe) ramondi Audouin (1826) and Cymadusa filosa Savigny (1816), the two well-known tropicopolitan members, are briefly redescribed. The study supports Barnard's (1970, p. 23) contention that the genus Pleonexes Bate (1857) (since reduced to subgeneric status under the genus Ampithoe Leach, 1814) represents only a grade of evolution, but suggests that the structure of the 1st maxillary and mandibular palps and the outer lobes of the lower lip should also be taken into consideration, in combination with the telsonic processes, for distinguishing Pleonexes from Ampithoe. Based on this concept, a reappraisal of some of the species of the genera is suggested. The subgenus Ampithoe is created to hold those species of Ampithoe showing typical characteristics of the genus.     

Sexual dimorphism in the buccal cavity of paternal mouthbrooding cardinalfishes (Pisces: Apogonidae)

The mechanical basis of mouthbrooding in the coral reef cardinalfish (family Apogonidae) has yet to be established. Sexual dimorphism in the anatomy of the oral jaws and buccal cavity of seven species of paternal mouthbrooding apogonids was therefore investigated. A novel silicon injecting technique was used to quantify between sexes differences in size and shape of the buccal cavity. Osteological and morphological measurements were also examined to identify the structural features associated with variation in buccal volumes. Males buccal volumes were proportionally larger by 20–42% in five of the seven species (P<0.01), a change that was largely a result of an increase in the depth of buccal cavity. Absence of distinct osteological differences between sexes suggests that changes in the soft anatomy are primarily responsible for the increased buccal volume in males. The average increase of 31% in buccal volume of males appears to reflect their role in mouthbrooding. This is the first study to demonstrate sexual dimorphism of the buccal cavity of multiple mouthbrooding species.     

Butyltin compounds and organochlorine residues in green mussel (Perna viridis L.) from India

Butyltin compounds (BTs) and organochlorine residues (OCs) were determined in green mussel (Perna viridis L.) collected along the coastal waters of India in 1994 and 1995 to elucidate their contamination levels and distribution. BTs were detected in all of the mussel samples, ranging from 2 to 378 ng/g wet wt, which indicated that BTs are widely distributed, with elevated concentrations in intense boating areas. BTs concentrations in green mussels were lower than those reported for developed nations as well as developing countries such as Thailand. Concentrations of OCs were much lower than those of BTs. Among OCs examined, DDTs were found to be greatest, followed by HCHs, PCBs, CHLs and HCB. Considering the fact that the usage of tributyltin (TBT), DDTs and HCHs are not controlled in India, their contamination in the aquatic environment may increase unless regulatory measures are imposed. To our knowledge, this is a first report on the detection of BTs in Indian mussels.     

Assessment of persistent organic pollutants in soil and sediments from an urbanized flood plain area

Polycyclic aromatic hydrocarbons (PAHs), organochlorine pesticides (OCPs) and phenolic compounds (PCs) are persistent organic compounds. Contamination of these potentially toxic organic pollutants in soils and sediments is most studied environmental compartments. In recent past, studies were carried out on PAHs, OCPs and PCs in various soils and sediments in India. But, this is the first study on these pollutants in soils and sediments from an urbanized river flood plain area in Delhi, India. During 2018, a total of fifty-four samples including twenty-seven each of soil and sediment were collected and analyzed for thirteen priority PAHs, four OCPs and six PCs. The detected concentration of ∑PAHs, ∑OCPs and ∑PCs in soils ranged between 473 and 1132, 13 and 41, and 639 and 2112 µg/kg, respectively, while their concentrations in sediments ranged between 1685 and 4010, 4.2 and 47, and 553 and 20,983 µg/kg, respectively. PAHs with 4-aromatic rings were the dominant compounds, accounting for 51 and 76% of total PAHs in soils and sediments, respectively. The contribution of seven carcinogen PAHs (7CPAHs) in soils and sediments accounted for 43% and 61%, respectively, to ∑PAHs. Among OCPs, p, p’-DDT was the dominant compound in soils, while α-HCH was found to be dominated in sediments. The concentrations of ∑CPs (chlorophenols) were dominated over ∑NPs (nitrophenols) in both the matrices. Various diagnostic tools were applied for the identification of their possible sources in soil and sediments. The observed concentrations of PAHs, OCPs and PCs were more or less comparable with the recently reports from various locations around the world including India. Soil quality guidelines and consensus-based sediment quality guidelines were applied for the assessment of ecotoxicological health effect.

     

Purple photosynthetic bacteria from a tropical mangrove environment

Purple photosynthetic bacterial strains were isolated from mud samples collected from the mudflats of Pichavaram mangroves (Tamil Nadu, India) in 1989 and 1990. The presence of two major groups of photosynthetic purple bacteria was recorded, viz., Group 1: purple sulphur bacteria (family Chromatiaceae, strains belonging toChromatium sp.); and Group 2: purple nonsulphur bacteria (family Rhodospirillaceae, strains apparently belonging toRhodopseudomonas sp.).     

Offspring sex ratio response to host size in the parasitoid wasp Spalangia endius

The host size model, an adaptive model for maternal manipulation of offspring sex ratio, was examined for the parasitoid wasp Spalangia endius. In a Florida strain, as the model predicts, daughters emerged from larger hosts than sons, but only when mothers received both small and large hosts simultaneously. The pattern appeared to result from the mother's ovipositional choice and not from differential mortality of the sexes during development. If sex ratio manipulation is adaptive in the Florida strain, it appears to be through a benefit to daughters of developing on large hosts rather than through a benefit to sons of developing on small hosts. Both female and male parasitoids were larger when they developed on larger hosts. For females, developing on a larger host (1) increased offspring production, except for the largest hosts, (2) increased longevity, (3) lengthened development, and (4) had no effect on wing loading. For males, development on a larger host had no effect on any measure of male fitness – mating success, longevity, development duration, or wing loading. In contrast, a strain from India showed no difference in the size of hosts from which daughters versus sons emerged, although both female and male parasitoids were larger when they developed on larger hosts. These results together with previous studies of Spalangia reveal no consistent connection between host-size-dependent sex ratio and host-size-dependent parasitoid size among strains of S. endius or among species of Spalangia. Received: 28 October 1998 / Received in revised form: 20 May 1999 / Accepted: 30 May 1999     

A study of osteological and molecular differences in populations of Aphanius fasciatus Nardo 1827, from the central Mediterranean (Teleostei, Cyprinodontidae)

Nine populations of Aphanius fasciatus Nardo, 1827 from the central Mediterranean were analysed by examining the mitochondrial control region and the morphology of the bony elements of the skull and vertebral column, to study the degree of intraspecific differentiation of A. fasciatus considering the level of isolation of the different populations and the palaeogeographic history of the central Mediterranean area. Both the molecular and morphological analyses differentiate between the populations, even if the topologies of the two trees are different. Molecular and osteological investigations have consistently demonstrated a well-supported differentiation of the south-eastern Sicilian populations both within the same group (Tigano et al. in Ital J Zool 71:1124–1133, 2004a; Tigano et al. in Abstract volume XI European Congress of Ichthyology, Tallin, Estonia, 2004b), and from the populations from western Sicily, Tunisia and the island of Malta. The molecular results show that the nine populations are characterised by haplotypes that are well defined in relation to a probably limited gene flow; while, as regards the morphological data the differentiation found could be explained in terms of the geographic isolation of the various populations, although the influence of environmental factors, which differ greatly between the various sites where the populations live, cannot be ruled out.     

A Simple Model to Determine In Situ Mixing Height Growth from Surface Measurements

A generic In Situ Mixing Height Growth (IMG) model, capable of predicting the real-time growth of the mixed layer and its diurnal evolution from routinely observed simple surface meteorological is developed. The algorithm for the determination of temporally growing daytime mixing height includes both convective and mechanical turbulence contributions. It accounts for neutral as well as height varying potential temperature gradients above the mixed layer. For thermally stable and mechanically dominated unstable night time Atmospheric Boundary Layer (ABL) the module uses similarity formulae based on the wind velocity [1]), the Monin—Obukhov length [2], and the Coriolis parameter. In the convective case simple slab model is integrated, based on initial lapse rate and the surface heat flux. The lapse rate is evaluated on the basis of vertical atmospheric stability, surface type and surface temperature. This differentiates the IMG model from other existing mixing height models that need initial measured lapse rate for calculation. IMG model is site specific as it calculates the radiative incoming heat flux depending on the solar declination estimates based on-site latitude and longitude. The IMG model is applied to calculate mixing height for India by using surface data (viz. wind speed, surface temperature, surface type) from 152 surface meteorological stations. Results have been evaluated with radiosonde mixing height data procured from 18 upper air stations. Sensitivity analysis of the model with respect to various parameters is performed. The model is formulated after reviewing presently available radiosonde mixing height data in India and can satisfactorily provide an alternative means of estimating mixing height for air pollution dispersion models.     

Bacterial diversity in mining and non-mining regions with emphasis on plant growth-promoting traits

A total of 20 soil samples were collected from mining and non-mining areas of coal field regions of Dhanbad, India. These samples were grown on different types of selective media and a total of 141 isolates, each having plant growth-promoting (PGP) characteristics were obtained. The isolates were further tested for PGP traits (phosphate solubilisation, production of indole acetic acid, hydrogen cyanide, ammonia and siderophores) and a biochemical analysis was done to determine the prevalent species of the region. All the strains selected showed at least two PGP characteristics, which indicated that they can be used as plant growth promoters. Bacillus and Pseudomonas species were prevalent in both mining and non-mining areas, whereas Rhizobium, Azospirillum and Azotobacter were found mostly in the non-mining area. A total of 48 Bacillus, 29 Pseudomonas, 4 Rhizobium, 11 Azospirillum and 10 Azotobacter species were obtained from the two selected regions. The soil samples from the mining region were poor in nutrient content and thus relatively lower numbers of PGP isolates were attained.     

Osteological development of Dentex dentex (Osteichthyes: Sparidae): dorsal, anal, paired fins and squamation

The osteological development of dorsal, anal and paired fins and the squamation in common dentex, Dentexdentex (Linnaeus, 1758), was studied under extensive larval rearing conditions. The ontogeny of the fins was determined in three stages: (1) the yolk-sac and the early larval stage (up to 6.7 mm in vivo total length, TL), in which the majority of the elements of the pectoral fins and the predorsals, dorsal and anal proximal pterygiophores formed; (2) the late larval stage (up to 11.6 mm TL), in which the majority of the pectoral lepidotrichia, the lower extrascapulae, all the elements of the pelvic fins, as well as the lepidotrichia, spines and the distal radials of the rest fins developed; and (3) the metamorphosis stage (up to 24.0 mm TL), when the upper extrascapulae formed and the pectoral lepidotrichia attained their full count. The ontogeny of squamation was carried out during the metamorphosis stage; it started at 13.4 mm TL with laterally symmetric points on the middle of each side of the body, followed by one ventral centre (15.6 mm TL) which was located anterior to the pelvic fins, and two bilateral pairs of centres which appeared on the head (17.8 and 21.2 mm TL). The results are discussed from a functional viewpoint and in comparison with the fin and scale ontogeny of other teleosts. Received: 1 March 2000 / Accepted: 20 September 2000     

The ecology of two sandy beaches in south west India. II. Notes on Emerita holthuisi

The mole crab Emerita holthuisi Sankolli occurred on two beaches, at Shertallai and at Cochin, in southwest India. Observations on the size-frequency of samples for Shertallai suggest that there were two main periods of recruitment, one in the pre-monsoon,months of February and March, and one during the monsoon, although there may have been some recruitment throught the year. At Cochin, E. holthuisi was present in the pre-monsoon period, but disappeared from the beach during the monsoon.     

Aliphatic and polycyclic aromatic hydrocarbon contamination in surface sediment of the Chitrapuzha River,South West India

Distribution (seasonal and spatial) of aliphatic and polycyclic aromatic hydrocarbons (PAHs) in surface sediments of the Chitrapuzha River, Cochin, India, was investigated using gas chromatography. Significantly high concentrations prevailed during the pre-monsoon season with the industrial zones of the river appearing to be hot spots with particularly elevated levels of the hydrocarbons. AHCs ranged between 7754 and 41,173?ng/g with an average of 25,256?ng/g, while total PAHs varied from 5046 to 33,087?ng/g. n-Alkane indices and PAH diagnostic ratios point to petroleum contamination in the sediments. The significance of PAHs in the sediments was explored using universally accepted interpretation tools. Observed levels of PAHs in sediments of Chitrapuzha are likely to cause adverse effects on biota.