A physically based statistical model of sand abrasion effects on periphyton biomass

The magnitude and frequency of discharge and fine sediment delivery to rivers can influence riverine food webs through the frequency of scour of algae from the streambed. Models that simulate changes in algal biomass are not very accurate for long periods with frequent low-magnitude flow events. During these periods, sand is mobilized over a stable gravel bed and periphyton losses are patchy at the reach scale. At the patch scale, we examine if an established threshold for rapid sand transport is also a periphyton perturbation threshold. We also develop and validate a statistical rock scale periphyton saltation abrasion model (PSAM) to simulate the abrasive effects of sand, transported by a hopping motion called saltation, on post-flow event biomass. Data were collected from 15 riffles of a Canadian Atlantic salmon river. The threshold clearly divided bed patches with high biomass and low transport rates, from those patches with low biomass and high transport rates. A dimensionally balanced PSAM regression model including explained 57% of the variance in post-flow event biomass. The validated model indicates that periphyton biomass decreases with increasing sand transport rates . Biomass was higher if the microscopic algae were protected from abrasion by growing either above the near-bed layer of saltating sand or within a mat containing more resistant macroalgae (e.g. Nostoc). The use of in our models facilitates testing of our findings in other hydro-sedimentary environments because W^* is a dimensionless scaling parameter that is well established in sediment transport literature. New insight is provided regarding modelling local heterogeneity in post-flow event biomass. These developments are essential to enable more accurate assessments of how periphyton biomass will change with the increase in the recurrence frequency of small flow events (and sand supply) associated with urbanization and climate change.     

Using multistate mark-recapture methods to model adult salmonid migration in an industrialized river

A multistate mark-recapture (MSMR) model of the adult salmonid migration through the lower Columbia River and into the Snake River was developed, designed for radiotelemetry detections at dams and tributary mouths. The model focuses on upstream-directed travel, with states determined from observed fish movement patterns indicating directed upstream travel, downstream travel (fallback), and use of non-natal tributaries. The model was used to analyze telemetry data from 846 migrating adult spring-summer Chinook salmon (Oncorhynchus tshawytscha) tagged in 1996 at Bonneville Dam on the Columbia River. We used the model to test competing hypotheses regarding delayed effects of fallback at dams and visits to tributaries, and to define and estimate migration summary measures. Tagged fish had an average probability of 0.755 () of ending migration at a tributary or upstream of Lower Granite Dam on the Snake River, and a probability of 0.245 () of unaccountable loss (i.e., mortality or mainstem spawning) between the release site downstream of Bonneville Dam and Lower Granite Dam. The highest probability of unaccountable loss (0.092; ) was in the reach between Bonneville Dam and The Dalles Dam. Study fish used the tributaries primarily as exits from the hydrosystem, and visits to non-natal tributaries had no significant effect on subsequent movement upriver (P = 0.4245). However, fallback behavior had a small effect on subsequent tributary entry and exit (P = 0.0530), with fish using tributaries as resting areas after reascending Bonneville Dam after fallback. The spatial MSMR model developed here can be adapted to address additional questions about the interaction of migrating organisms with their environment, or for the study of migrations in other river systems.     

Throughflow analysis: A stochastic approach

Ecological network analysis (ENA), predicated on systems theory and Leontiev input–output analysis, is a method widely used in ecology to reveal ecosystem properties. An important ecosystem property computed in ENA is throughflows, the amount of matter/energy leaving each compartment of the ecosystem. Throughflows are analyzed via a matrix representing their relationships to the driving input at the boundary. Network particle tracking (NPT) builds on ENA to offer a Lagrangian particle method that describes the activity of the ecosystem at the microscopic level. This paper introduces a Lagrangian throughflow analysis methodology using NPT and shows that the NPT throughflow matrix, , agrees with the conventional ENA throughflow matrix, , for ecosystems at steady-state with donor-controlled flows. The matrix is computed solely from the pathways (particles’ histories) generated by NPT simulations and its average over multiple runs of the algorithm with longer simulation time agrees with the Eulerian matrix (Law of Large Numbers). While the traditional NEA throughflow analysis is mostly used with steady-state ecosystem models, the Lagrangian throughflow analysis that we propose can be used with non-steady-state models and paves the way for the development of dynamic throughflow analysis.     

Growth and form in the reef-building coral Montastrea annularis

The in-situ growth rate of the reef coral Montastrea annularis on a reef at Jamaica, W. Indies was determined for a 1-year period using Alizarin Red-S staining techniques. Growth rate is correlated with water depth and growth form. The flattened growth form of M. annularis allows for continued rapid increase in colony surface area at low light intensities. The geomorphology of Jamaican reefs may in part be controlled by the population ecology of M. annularis.     

Variation in benthic communities of eastern Caribbean coral reefs in relation to surface sediment composition

The effects of sedimentation on coral reefs are commonly studied at local scales, but larger-scale patterns have been elusive, making it difficult to determine the role of sedimentation in region-wide changes in these ecosystems. We examined the relationships between characteristics of reef-associated surface sediment and benthic composition of 22 reefs around 11 islands of the eastern Caribbean. The terrigenous fraction in surface sediment increased with proximity to a clear source of sediment input. The percent cover of live coral, macroalgae, and turf algae decreased with higher terrigenous sediment fraction, while sponge cover increased. Sites with sediment containing high and low terrigenous fraction differed in coral species assemblages. In particular, the cover of Montastraea annularis complex decreased with increasing terrigenous sediment fraction. The proportion of fine-grained sediment had no effect on benthic composition. These results suggest that sedimentation may play a role in shaping coral reef communities at a regional scale.     

Modelling assessment of PM10 exposure control policies in Northern Italy

To assess the impact of three different emission reduction scenarios on PM10 concentrations in Northern Italy, the TCAM multiphase model has been applied in the framework of the CityDelta III-CAFE EU project. The considered domain, that is characterized by high urban and industrial emissions and a dense road traffic, due to frequently stagnating meteorological conditions is often affected by severe PM10 levels, far from the European standard regulations. The impact evaluation has been performed in terms of both yearly mean values and 50 g/m³ exceedance days for the 2004 Base Case simulation. The results show that the three selected emission reduction scenarios up to 2020 improve air quality all over the domain, in particular, in the area with higher emission density.     

Coral recruitment: a spatio-temporal analysis along the coastline of Eilat,northern Red Sea

Recruitment rates of stony corals to artificial substrates were monitored for 2 years at 20 sites along the coast of Eilat, northern Red Sea, to compare with those recorded at other coral reef locations and to assess variation in recruitment at several spatial scales. Coral recruitment was low compared to that observed on the Great Barrier Reef in Australia, but was similar to levels reported from other high-latitude reef locations. Pocilloporids were the most abundant coral recruits in all seasons. Recruitment was twofold higher during the first year than during the second year of study. There was considerable spatial variability, with the largest proportion of variance, apart from the error term, attributable to differences between sites, at a scale of 10² m. Spearmans ranked correlation showed consistency in spatial patterns of recruitment of pocilloporid corals between years, but not of acroporid corals. During spring, when only the brooding pocilloporid coral Stylophora pistillata reproduces at this locality, most coral recruitment occurred at central and southern sites adjacent to well-developed coral reefs. During summer, recruitment patterns varied significantly between years, with wide variation in the recruitment of broadcasting acroporid corals at northern sites located distant from coral reefs. Settlement was low at all sites during autumn and winter. This work is the first detailed analysis of coral recruitment patterns in the Red Sea, and contributes to the understanding of the spatial and temporal scales of variation in this important reef process.Communicated by O. Kinne, Oldendorf/Luhe     

Plankton inhabiting the surface layer of the southern and southwestern lagoon of New Caledonia

In the southern and southwestern coral reef lagoon of New Caledonia and the adjacent oceanic waters, 42 neuston samples were collected from the upper surface layer (0 to 10 cm) along nine transects from the coast to the coral barrier reef and the open ocean immediately beyond the reef, in March and April 1979. There was a progressive numerical decrease in zooplankton densities from the coast to the reef and from the reef to the open sea. Generally, 80 to 95% of the surface plankton consisted of holoplankton and 5 to 20% of meroplankton. Zooplankton was very abundant in littoral bays with a marked eutrophication. In a few samples collected in very shallow waters close to coral patches, cladocerans were numerous and constituted up to 75% of the total plankton, whilst in other samples collected above greater depths, copepods made up 60 to 85% of the total plankton. In the coral reef lagoon of south and southwest New Caledonia, typically hyponeustonic copepods (pontellids) often comprised 5% of the total copepod populations.     

Transmission distance of chemical cues from coral habitats: implications for marine larval settlement in context of reef degradation

The present study (Ishigaki Island, Japan) explored the distance of transmission of chemical cues emitted by live versus dead coral reefs (Exp. 1: High performance liquid chromatography (HPLC) analyses with water sampling station at 0, 1, and 2 km away from the reef) and the potential attraction of these chemical cues by larval fish, crustaceans, and cephalopods (Exp. 2: choice flume experiment conducted on 54 Chromis viridis larvae, 52 Palaemonidae sp larvae, and 16 Sepia latimanus larvae). In the experiment 1, HPLC analyses highlighted that the live coral reef (and not the dead coral reef) produced different and distinct molecules, and some of these molecules could be transported to a distance of at least 2 km from the reef with a reduction of concentration by 14–17-fold. In the experiment 2, C. viridis, Palaemonidae sp, and S. latimanus larvae were significantly attracted by chemical cues from a live coral reef (sampling station: 0 km), but not from a dead coral reef. However, only C. viridis larvae detected the chemical cues until 1 km away from the live coral reef. Overall, our study showed that chemical cues emitted by a live coral reef were transported farthest away in the ocean (at least 2 km) compared to those from a dead coral reef and that fish larvae could detect these cues until 1 km. These results support the assumption of a larval settlement ineffective in degraded coral reefs, which will assist conservationists and reef managers concerned with maintaining biodiversity on reefs that are becoming increasingly degraded.     

Studies on survival and growth rate of transplanted Acroporidae in Gulf of Kachchh Marine National Park,India

Fragments of live colonies of scleractinian coral Acropora sp. and Montipora sp. under the family Acroporiidae were collected from Gulf of Mannar and transplanted in Pirotan, Narara and Mithapur reefs of Gulf of Kachchh Marine National Park. All the transplanted corals survived one complete season and it was observed that 87 nubbins out of the total 110 samples survived in Narara reef and 70 nubbins out of 102 samples stayed alive in Pirotan Island. Growth rate was measured for four months period, and it was found maximum in Narara reef, while minimum in Pirotan Island. The rate of sedimentation was higher during monsoon and low in winter season. Present study showed that species of Acropora and Montipora are suitable for transplantation in Gulf of Kachchh Marine National Park, Gujarat, India.     

Stability and structure of a fish community on a coral patch reef in Hawaii

Two complete collections of the fishes residing on an isolated coral patch reef ( 1500 m²) at Oahu, Hawaii, were made 11 years apart. Of the 112 species of fishes in both collections combined, only 40% were in common, but these made up more than 85% of the wet biomass in each collection. The two assemblages of fishes were similar in trophic structure and standing crop. Many coral reef fish communities are dominated by carnivorous forms. In the present study, planktivorous fishes were the most important trophic group in the community; this was related to abundant zooplankton resources. Following the second collection in 1977, recolonization by fishes was followed for 1 year. Recolonization proceeded rapidly and was primarily by juvenile fishes well beyond larval metamorphosis. Within 6 months of the second collection, the trophic structure had been re-established. The MacArthur-Wilson model of insular colonization described the recolonization process and predicted an equilibrium situation in less than 2 years. The recolonization data suggested that chance factors may explain the colonization process on a small scale, but a relatively deterministic pattern emerged when considering the entire reef. Thus, at the community level the fishes are a persistent and predictable entity.     

Ecology of a corallivorous gastropod,<Emphasis Type="Italic"> Coralliophila abbreviata</Emphasis>, on two scleractinian hosts. I: Population structure of snails and corals

Despite their potential importance in structuring reef communities, invertebrate corallivores and their population structures are poorly understood. We found distinct differences in the population structures (length-frequency distribution and sex ratio) of the corallivorous gastropod Coralliophila abbreviata residing on two coral-host taxa, Montastraea spp. and Acropora palmata, in the Florida Keys. In each of two survey years, around 50% of the Montastraea spp. colonies were infested, with a mean snail density of eight snails per infested colony (range 1–45), while around 20% of A. palmata colonies harbored three snails per infested colony (range 1–23). Variation in patterns of snail occurrence was also observed within a host taxon. A. palmata occurred in low- and high-density stands (0.4 and 1 colony m^–2, respectively, at the initial survey) at different sites. Hurricane Georges struck the area in September 1998. When resurveyed in 1999, density of colonies in low-density stands had decreased by 75% to 0.1 colonies m^–2. This decrease was accompanied by a doubling in the proportion of colonies infested with snails (from 19% to 46%) and an increase in snail density per infested colony (from 3.7±3.3 SD to 5.4±4.6 SD) as snails apparently concentrated on surviving A. palmata. In contrast, sites with high density A. palmata stands (thickets) retained colony densities of about ~1 colony m^–2 among years, while snail infestation increased only from 9% to 14% of colonies surveyed and snail density essentially remained unchanged (from 2.7±1.8 to 2.9±1.9 snails per infested colony). Snails collected from Montastraea spp. were shorter than those from A. palmata in low-density stands and were longest on A. palmata in thickets. On both host taxa, female snails were longer than males. The sex ratio of snails on Montastraea spp. hosts was even (1:1), while that of snails on A. palmata was skewed (70% males). Factors that could explain observed differences in size structure and sex ratio between Coralliophila populations on the two coral host taxa include: differential susceptibility to predators, influence of host tissue nutritional quality and/or secondary metabolite content, and genetic differences (cryptic species). The host-specific characteristics of C. abbreviata populations imply that the impact of gastropods on reef communities will vary with the coral species composition.     

Ecological studies of the coral predator Acanthaster planci in the south pacific

Ecological surveys involving over 500 man-days between 1966 and 1969 indicate that the coral-eating sea star, Acanthaster planci, is a normal component of the coral reef community throughout the tropical Pacific, and that its abundance in the past has probably been underestimated. The sea star is not uncommon in certain environments, particularly back-reef and lagoon slopes. Sheltered, inner reefs are generally preferred over less protected reefs. Recently reported population explosions of A. planci at Guam and on the Great Barrier Reef of Australia appear to be isolated, widely-separated, local infestations of unknown cause. The infestation on the Great Barrier Reef has not spread beyond the area off Cairns and Innisfail. Approximately 40 of the more than 1000 reefs comprising the Great Barrier Reef complex have been infested heavily.     

Cleaner-client interactions on a Caribbean reef: influence of correlates of parasitism

We investigated the influence of known correlates of parasitism, namely fish density, body size and social behaviour, on three highly variable aspects of the interactions between cleaning gobies (Elacatinus spp.) and their clients, on a Barbadian coral reef. We specifically considered (1) variability in client visit rate to cleaning stations, (2) cleaning goby preference for specific clients and (3) variation in the time spent cleaning by cleaners. Using phylogenetically independent contrasts, we found that client species that were abundant on the reef visited cleaning stations more often than rarer client species. This could be due to the positive relationship between ectoparasite load and client density, or alternatively may simply reflect the frequency of contact between cleaners and clients. Cleaning gobies spent more time cleaning large-bodied clients, which usually have higher ectoparasite loads, although cleaning goby preference for clients was influenced by none of the correlates of client parasitism. Overall, factors assumed to correlate with ectoparasite load had a limited influence on the variability observed in the interactions between cleaning gobies and their clients. Received: 27 October 1999 / Received in revised form: 11 January 2000 / Accepted: 24 January 2000     

Distribution,abundance, and substrate preferences of demersal reef zooplankton at Lizard Island Lagoon,Great Barrier Reef

Demersal zooplankton, those plankton which hide within reef sediments during the day but emerge to swim freely over the reef at night, were sampled quantitatively using emergence traps planced over the substrate at Lizard Island Lagoon, Great Barrier Reef. Densities of zooplankton emerging at night from 6 substrate types (fine, medium, and coarse sand, rubble, living coral and reef rock) and from 5 reef zones (seaward face, reef flat, lagoon, back reef, and sand flat) were determined. A large population of nocturnal plankton including cumaceans, mysids, ostracods, shrimp, isopods, amphipods, crustacean larvae, polychaetes, foraminiferans and copepods are resident members of the reef community at Lizard Island. The mean density of plankton emerging throughout the reef was 2510±388 (standard error) zooplankton/m² of substrate. Biomass averaged 66.2±5.4 mg ash-free dry weight/m² of substrate. Demersal zooplankton exhibited significant preferences for substrate types and reef zones. The highest mean density of zooplankton emerged from coral (11,264±1952 zooplankton/m²) while the lowest emerged from reef rock (840±106 zooplankton/m²). The density of demersal plankton was six times greater on the face than in any other zone, averaging 7900±1501 zooplankton/m². Copepods dominated samples collected over living coral and rubble while foraminiferans, ostracods and decapod larvae were most abundant from sand. Plankton collected with nets at night correlated only qualitatively with plankton collected in emergence traps from the same location. Although abundant, demersal plankton were not numerous enough to meet the metabolic needs of all corals at Lizard Island Lagoon. Demersal plankton appear especially adapted to avoid fish predation. The predator-avoidance strategies of demersal plankton and maintenance of position on the reef are discussed. Our results indicate that much of the zooplankton over coral reefs actually lives on the reef itself and that previous studies using standard net sampling techniques have greatly underestimated plankton abundance over coral reefs.     

Ecology of a Caribbean coral reef. The Porites reef-flat biotope: Part II. Plankton community with evidence for depletion

A quantitative assessment of drifting net plankton crossing a reef-flat biotope was obtained on a Caribbean coral reef. The spatial distribution and abundance of plankton were sampled to provide estimates of the removal of this potential food resource by suspension-feeding populations. Sampling was largely confined to the reef flat and adjacent waters of Laurel Cay, a flourishing coral reef present on the insular shelf off southwestern Puerto Rico. A prior study provides information on the meteorological and hydrographic characteristics of this area. Evidence for plankton accrual was found in the quantitative depletion of qualitatively similar populations sampled downstream of densely populated reef communities. Numerically, the diatom crop was reduced by 91% and zooplankton by 60% in water streaming off the reef. Significant diel and seasonal variations in plankton abundance were obcerved, as well as notable differences in volume flow, the latter closely related to the local wind regime. A time course of net plankton accrual was calculated, taking into account these various factors. During the summer season (July–August), when zooplankton was relatively abundant and water movement over the reef vigorous, the total gain from plankton reached 0.25 gC/m²/day; 75% of this occurred during a 4 h period at sunrise and sunset. Plankton retained on the reef flat in January of February and in September was around 0.1 g C/m²/day. Zooplankton biomass contributed the greatest share, exceeding that of diatoms by a factor of 10 during the day and 42 in the early evening. A mean annual accrual of 0.18 g C/m²/day is equivalent to 4 to 13% of net community metabolism.     

Reef recovery 20 years after the 1982–1983 El Niño massive mortality

For over 20 years the El Niño-Southern Oscillation (ENSO) has caused damage to the coral reefs of the eastern Pacific and other regions. In the mid-1980s scientists estimated that coral cover was reduced by 50–100% in several countries across the region. Almost 20 years (2002) after the 1982–1983 event, we assessed the recovery of the virtually destroyed reefs at Cocos Island (Costa Rica), previously evaluated in 1987 and reported to have less than 4% live coral cover. We observed up to fivefold increase in live coral cover which varied among reefs surveyed in 1987 and 2002. Most new recruits and adults belonged to the main reef building species from pre-1982 ENSO, Porites lobata, suggesting that a disturbance as outstanding as El Niño was not sufficient to change the role or composition of the dominant species, contrary to phase shifts reported for the Caribbean. During the 1990s, new species were observed growing on the reefs. Notably, Leptoseris scabra, considered to be rare in the entire Pacific, was commonly found in the area. Recovery may have begun with the sexual and asexual recruits of the few surviving colonies of P. lobata and Pavona spp. and with long distance transport of larvae from remote reefs. We found an overall 23% live coral cover by 2002 and with one reef above 58% indicating that Cocos Island coral reefs are recovering.