On the evidence for species coexistence: a critique of the coexistence program

A major challenge in ecology is to understand how the millions of species on Earth are organized into biological communities. Mechanisms promoting coexistence are one such class of organizing processes, which allow multiple species to persist in the same trophic level of a given web of species interactions. If some mechanism promotes the coexistence of two or more species, each species must be able to increase when it is rare and the others are at their typical abundances; this invasibility criterion is fundamental evidence for species coexistence regardless of the mechanism. In an attempt to evaluate the level of empirical support for coexistence mechanisms in nature, we surveyed the literature for empirical studies of coexistence at a local scale (i.e., species found living together in one place) to determine whether these studies satisfied the invasibility criterion. In our survey, only seven of 323 studies that drew conclusions about species coexistence evaluated invasibility in some way in either observational or experimental studies. In addition, only three other studies evaluated necessary but not sufficient conditions for invasibility (i.e., negative density dependence and a trade-off in performance that influences population regulation). These results indicate that, while species coexistence is a prevalent assumption for why species are able to live together in one place, critical empirical tests of this fundamental assumption of community structure are rarely performed. These tests are central to developing a more robust understanding of the relative contributions of both deterministic and stochastic processes structuring biological communities.     

Parasite facilitates plant species coexistence in a coastal wetland

Outbreaks of infectious agents in natural ecosystems are on the rise. Understanding host-pathogen interactions and their impact on community composition may be central to the conservation of biological diversity. Infectious agents can convey both exploitive and facilitative effects that regulate host populations and community structure. Parasitic angiosperms are highly conspicuous in many plant communities, and they provide a tractable model for understanding parasite effects in multispecies communities. I examined host identity and variation in host infectivity of a holoparasitic vine (Cuscuta salina) within a California salt marsh. In a two-year parasite removal experiment, I measured the effect of C. salina on its most frequent host, a rare hemiparasite, and the plant community. C. salina clearly suppressed the dominant host, but rare plant fitness and plant species diversity were enhanced through indirect effects. Priority effects played a role in the strength of the outcome due to the timing of life history characteristics. The differential influence of parasites on the fecundity of multiple hosts can change population dynamics, benefit rare species, and alter community structure. The continuum of negative to positive consequences of parasitic interactions deserves more attention if we are to understand community dynamics and successfully restore tidal wetlands.     

Hemiparasites generate environmental heterogeneity and enhance species coexistence in salt marshes.

Tidal inundation and salinity are considered to be controlling factors in salt marsh species distributions. Parasitic plants may also influence community organization as parasite-host interactions may play a functional role in stress amelioration due to physiological mechanisms for salinity tolerance and resource acquisition. Endangered root hemiparasites (Cordylanthus maritimus ssp. palustris and Cordylanthus mollis ssp. mollis) occupy unique habitat within fragmented northern California tidal wetlands. My objective was to examine the effects of these root hemiparasites on soil salinity, aeration, and community composition. I compared experimentally established bare patches, shaded and unshaded, and parasite removal patches to controls with hemiparasites across intertidal elevation gradients. Plant community composition, soil salinity, and redox potential were measured as response variables. In this field removal experiment, I demonstrated that parasite-host associations can enhance the amelioration of physical stress conditions in the salt marsh exceeding the passive role of shading by vegetation. Consumer-driven reduction of physical stress resulted in increased plant species richness, and the effect was most pronounced with elevated salinity and hypoxia stress. Although previous studies have demonstrated that removal of dominant plant biomass by herbivores can increase physical stress in salt marshes, this is one of the first examples of a positive indirect effect of a consumer on community diversity through physical stress relief. Greater understanding of biological interactions coupled with abiotic factors may improve rare plant conservation and salt marsh restoration success.     

Trade-offs, temporal variation, and species coexistence in communities with intraguild predation

Intraguild predation/parasitism (IGP: competing species preying on or parasitizing each other) is widespread in nature, but the mechanisms by which intraguild prey and predators coexist remain elusive. Theory predicts that a trade-off between resource competition and IGP should allow local niche partitioning, but such trade-offs are expressed only at intermediate resource productivity and cannot explain observations of stable coexistence at high productivity. Coexistence must therefore involve additional mechanisms beside the trade-off, but very little is known about the operation of such mechanisms in nature. Here I present the first experimental test of multiple coexistence mechanisms in a natural community exhibiting IGP. The results suggest that, when resource productivity constrains the competition-IGP trade-off, a temporal refuge for the intraguild prey can not only promote coexistence, but also change species abundances to a pattern qualitatively different from that expected based on the trade-off or a refuge alone. This is the first empirical study to demonstrate a mechanism for why communities with IGP do not lose species diversity in highly productive environments. These results have implications for diversity maintenance in multi-trophic communities, and the use of multiple natural enemies in biological control.     

Soil vs. canopy seed storage and plant species coexistence in species-rich Australian shrublands

The fire-prone shrublands of southwestern Australia are renowned for their high plant species diversity and prominence of canopy seed storage (serotiny). We compared species richness, abundance, and life history attributes for soil and canopy seed banks in relation to extant vegetation among four sites with different substrate conditions and high species turnover (50-80%) to identify whether this unusual community-level organization of seed storage might contribute to maintenance of high species richness. Soil seed bank (SSB) densities were low to moderate (233-1435 seeds/m2) compared with densities for other Mediterranean-type vegetation and were lowest for sites with highest canopy seed bank (CSB) species richness and lowest nutrient availability, but not richness or abundance of resprouters. Annuals were infrequent in the lowest nutrient sites, but there was no evidence that small SSB size was due to low seed inputs or a trade-off between seed production/storage and seed size in response to low nutrient availability. Sorensen's similarity between SSB and extant vegetation was 26-43% but increased to 54-57% when the CSB was included, representing levels higher than reported for most other ecosystems. Resprouting species were well represented in both the SSB and CSB, and there was no evidence for lower seed production in resprouters than in non-sprouters overall. The SSB and CSB held no species in common and were characterized by markedly different seed dispersal attributes, with winged or small seeds in the CSB and seeds dispersed by ants, birds, and wind (though none with wings) in the SSB. There was no evidence of spatial differentiation in the distribution of seeds of SSB species between vegetated and open microsites that might facilitate species coexistence, but most woody non-sprouters showed aggregation at scales of 1-2 m, implying limited seed dispersal. High similarity between overall seed bank (SSB + CSB) and extant species composition, high number of resprouting species, and seed dispersal processes before (SSB) and after fire (CSB) leading to differential spatial aggregation of post-fire recruits from the two seed bank types may buffer species composition against rapid change and provide a mechanism for maintaining species coexistence at the local scale.     

Regional coexistence and local dominance in Chaoborus: species sorting along a predation gradient

Variation in the intensity of predation across the well-known environmental gradient of freshwater habitats from small, ephemeral ponds to large, permanent lakes is a key factor in the development and maintenance of aquatic community structure. Here, we present data on the distribution and abundance of four species of Chaoborus (Diptera: Chaoboridae) across this environmental gradient. Chaoborus show a distinct pattern of species sorting when aquatic systems are divided into fish and fishless environments, and this pattern is consistent with species traits known to influence their vulnerability to fish predation (i.e., pigmentation, diel vertical migration [DVM] behavior, and body size). To test whether fish are the drivers of this pattern, we created a gradient in fish density by stocking bluegill sunfish (Lepomis macrochirus) into 15 experimental ponds in southwestern Michigan, USA, and then allowed Chaoborus species to colonize. There was clear evidence of species sorting along the predation gradient; Chaoborus americanus was most abundant in the fishless ponds, C. flavicans was neutral in response to fish, and C. punctipennis and C. albatus were most abundant at high fish biomass, a response consistent with their field pattern. Furthermore, prey preference experiments confirm that size selective predation and differences in Chaoborus species traits contribute to the pattern of Chaoborus abundance and distribution.     

Plasticity in circadian activity patterns of mesocarnivores in Southwestern Europe: implications for species coexistence

Limiting similarity theory predicts that competing species must segregate along one or more dimensions of their ecological niche in order to coexist. In predator communities, interspecific interactions are influenced by a diversity of factors; therefore, the behavioural patterns of composing species will differ due to locally adapted interactions. We deployed 32–41 camera-traps in five study areas across the Iberian Peninsula to investigate the temporal relations between mesocarnivores in SW Europe. The selection for a period of the diel cycle and plasticity in activity patterns was evaluated using the Jacobs Selection Index (JSI) and the coefficient of activity overlap (?₁). Furthermore, we investigated whether temporal shifts can facilitate coexistence by reducing activity overlap. Seven species of mesocarnivores were detected and were assigned into one of three behaviourally distinct groups: diurnal (JSI_day?≥?0.8), strictly nocturnal (JSI_night?≥?0.8) or facultative nocturnal species (0.4?≥?JSI_night?>?0.8). Most species exhibited substantial flexibility, which allowed them to locally adapt their foraging strategies (intraspecific ?₁?=?0.70–0.77). Mean Δ₁ from all interspecific pairwise comparisons was negatively correlated with the number of carnivore species with ≥10 detections (r ?0.76, p?=?0.02). Our results suggest that temporal segregation is likely to play an important role in facilitating mesocarnivore coexistence, especially with increasing community complexity, where most species’ activity peaks were asynchronous. These results contribute to understanding the dynamics and behavioural strategies of coexisting mesocarnivores, crucial for forecasting the possible outcomes of conservation or management actions.     

Widespread density-dependent seedling mortality promotes species coexistence in a highly diverse Amazonian rain forest

Negative density-dependent mortality can promote species coexistence through a spacing mechanism that prevents species from becoming too locally abundant. Negative density-dependent seedling mortality can be caused by interactions among seedlings or between seedlings and neighboring adults if the density of neighbors affects the strength of competition or facilitates the attack of natural enemies. We investigated the effects of seedling and adult neighborhoods on the survival of newly recruited seedlings for multiple cohorts of known age from 163 species in Yasuni National Park, Ecuador, an ever-wet, hyper-diverse lowland Amazonian rain forest. At local scales, we found a strong negative impact on first-year survival of conspecific seedling densities and adult abundance in multiple neighborhood sizes and a beneficial effect of a local tree neighborhood that is distantly related to the focal seedling. Once seedlings have survived their first year, they also benefit from a more phylogenetically dispersed seedling neighborhood. Across species, we did not find evidence that rare species have an advantage relative to more common species, or a community compensatory trend. These results suggest that the local biotic neighborhood is a strong influence on early seedling survival for species that range widely in their abundance and life history. These patterns in seedling survival demonstrate the role of density-dependent seedling dynamics in promoting and maintaining diversity in understory seedling assemblages. The assemblage-wide impacts of species abundance distributions may multiply with repeated cycles of recruitment and density-dependent seedling mortality and impact forest diversity or the abundance of individual species over longer time scales.     

Ecological opportunity and phenotypic plasticity interact to promote character displacement and species coexistence

We investigated the roles of resource availability and phenotypic plasticity in promoting ecological character displacement (i.e., trait evolution stemming from resource competition between species). Because ecological character displacement generates new populations that differ in resource use, this process should only occur when exploitable resources are available. We tested this hypothesis in two species of spadefoot toads (Spea bombifrons and S. multiplicata) whose tadpoles use phenotypic plasticity to develop into either an omnivore morph, which specializes on detritus, or a physically distinctive carnivore morph, which specializes on shrimp. Both species grow best on shrimp, but when reared together, S. bombifrons outcompetes S. multiplicata for shrimp and S. multiplicata outcompetes S. bombifrons for detritus. We found that when each species occurred alone in the field, they produced similar proportions of omnivores and carnivores. When the two species occurred together, however, they underwent ecological character displacement in larval development, with S. multiplicata producing mostly omnivores, and S. bombifrons producing mostly carnivores. We combined observations of natural populations with experiments to evaluate whether such character displacement was only possible when both shrimp and detritus were relatively abundant. Mixed-species ponds contained abundant detritus and shrimp, in contrast with nearby pure-species ponds, which were deficient in one resource. Experiments revealed that S. multiplicata competed poorly when detritus was rare and that S. bombifrons competed poorly when shrimp was rare. In nature, when one of these two resources was scarce, one species was missing, perhaps through competitive exclusion by the species that was the superior competitor for the remaining resource. Thus, ecological character displacement and, therefore, coexistence of close competitors, was only possible when diverse resources were available. Finally, even if exploitable resources are available, character displacement is not guaranteed to transpire if species cannot utilize such resources expeditiously. Phenotypic plasticity provides a general and important mechanism for facilitating resource partitioning. Thus, by facilitating shifts in resource use, phenotypic plasticity and ecological opportunity may often interact to promote divergence and coexistence of competitors.     

Conditions for coexistence of freshwater mussel species via partitioning of fish host resources

Riverine freshwater mussel species can be found in highly diverse communities where many similar species coexist. Mussel species potentially compete for food and space as adults, and for fish host resources during the larval (glochidial) stage. Resource partitioning at the larval stage may promote coexistence. A model of resource utilization was developed for two mussel species and analyzed to determine conditions for coexistence. Mussel species were predicted to coexist when they differed in terms of their success in contacting different fish host species; very similar strategies offered limited possibilities for coexistence. Differences in the mussel species’ maximum infestation loads on the fish hosts that coincided with differences in their fish host contact success promoted coexistence. Mussel species with a given set of trade-offs in fish host use were predicted to coexist only for a subset of relative fish host abundances, so a shift in relative fish host abundances could result in the loss of a mussel species. An understanding of the conditions for freshwater mussel species coexistence can help explain high mussel diversity in rivers and guide ongoing conservation activities.     

Fuel breaks affect nonnative species abundance in Californian plant communities.

We evaluated the abundance of nonnative plants on fuel breaks and in adjacent untreated areas to determine if fuel treatments promote the invasion of nonnative plant species. Understanding the relationship between fuel treatments and nonnative plants is becoming increasingly important as federal and state agencies are currently implementing large fuel treatment programs throughout the United States to reduce the threat of wildland fire. Our study included 24 fuel breaks located across the State of California. We found that nonnative plant abundance was over 200% higher on fuel breaks than in adjacent wildland areas. Relative nonnative cover was greater on fuel breaks constructed by bulldozers (28%) than on fuel breaks constructed by other methods (7%). Canopy cover, litter cover, and duff depth also were significantly lower on fuel breaks constructed by bulldozers, and these fuel breaks had significantly more exposed bare ground than other types of fuel breaks. There was a significant decline in relative nonnative cover with increasing distance from the fuel break, particularly in areas that had experienced more numerous fires during the past 50 years, and in areas that had been grazed. These data suggest that fuel breaks could provide establishment sites for nonnative plants, and that nonnatives may invade surrounding areas, especially after disturbances such as fire or grazing. Fuel break construction and maintenance methods that leave some overstory canopy and minimize exposure of bare ground may be less likely to promote nonnative plants.     

Interaction networks in coastal soft-sediments highlight the potential for change in ecological resilience

Recent studies emphasize the role of indirect relationships and feedback loops in maintaining ecosystem resilience. Environmental changes that impact on the organisms involved in these processes have the potential to initiate threshold responses and fundamentally shift the interactions within an ecosystem. However, empirical studies are hindered by the difficulty of designing appropriate manipulative experiments to capture this complexity. Here we employ structural equation modeling to define and test the architecture of ecosystem interaction networks. Using survey data from 19 estuaries we investigate the interactions between biological (abundance of large bioturbating macrofauna, microphytobenthos, and detrital matter) and physical (sediment grain size) processes. We assess the potential for abrupt changes in the architecture of the network and the strength of interactions to occur across environmental gradients. Our analysis identified a potential threshold in the relationship between sediment mud content and benthic chlorophyll a, at -12 microg/g, using quantile regression. Below this threshold, the interaction network involved different variables and fewer feedbacks than above. This approach has potential to improve our empirical understanding of thresholds in ecological systems and our ability to design manipulative experiments that test how and when a threshold will be passed. It can also be used to indicate to resource managers that a particular system has the potential to exhibit threshold responses to environmental change, emphasizing precautionary management and facilitating a better understanding of how persistent multiple stressors threaten the resilience and long-term use of natural ecosystems.     

Salinity effects on the coexistence of cryptic species: a case study on marine nematodes

The coexistence of four cryptic species of Rhabditis (Pellioditis) marina (Nematoda: Rhabditidae) at small geographical scale challenges ecological competition theory and was therefore studied in the laboratory at two different salinities, where their performance in combined cultures was compared with that in monospecies cultures. We found that three of the four cryptic species were able to coexist, but that interspecific interactions (competition and facilitation) were common. Salinity had an effect on these interactions, with a shift from contest to scramble competition. This shift may result from an increased population development of two of the four species at the lower salinity in the monospecific cultures. This experiment demonstrates that abiotic conditions may play an important role in achieving coexistence between cryptic species and can alter the interspecific interactions between them.     

两种常见沉水植物与藻的相互作用

选用太湖常见的沉水植物苦草(VallisneriaspiralisL.)和轮叶黑藻(HydrillaverticillataRoyle),构建微型生态系统。通过对沉水植物作用下水体中藻类叶绿素a及试验前后沉水植物生物量变化的观测,分析沉水植物与藻类的相互作用。结果表明,(1)相同条件下,苦草和轮叶黑藻对藻类变化的影响没有显著差异。(2)在苦草生物量相同的情况下,藻类叶绿素a初始值越大,其变化速率也越快。叶绿素a初始值差别越大,其变化速率差异越显著。轮叶黑藻也有相似的结果。(3)从试验前后苦草和轮叶黑藻生物量的变化可知,苦草受藻类影响较大,轮叶黑藻几乎没有受到藻的影响。     

Abundance and survival rates of green turtles in an urban environment: coexistence of humans and an endangered species

Longitudinal capture-mark-recapture data were used to estimate abundance and survival rates for green turtles (Chelonia mydas) in San Diego Bay, California, USA. These turtles were closely associated with warm effluent from a power plant during winter months. The life stage distribution of green turtles in the bay ranged from post-pelagic juveniles to adults (44.0–110.4 cm straight carapace length). During 99 capture sessions between December 2, 1990, and March 25, 2009, 96 individual green turtles were caught. To estimate abundance and survival rates, robust-design mark-recapture models were fitted to capture-recapture histories using software MARK. The estimated annual survival rate was 0.861 (SE = 0.147, 95% CI = 0.356–0.986), whereas annual abundance ranged from 16 (SE = 6.3, 95% CI = 4–29) to 61 (SE = 13.2, 95% CI = 36–88). This study provides the first survival rate and abundance estimates for a green turtle foraging population in the highly industrialized San Diego Bay.     

Herbivore species, infestation time, and herbivore density affect induced volatiles in tea plants

In response to insect herbivory, plants emit volatiles that are used by the herbivores’ natural enemies to locate their host or prey. Herbivore attack also enhances tea aroma. Herbivore-induced plant volatiles (HIPVs) vary both quantitatively and qualitatively with infestation duration and herbivore density. Thus, whether HIPVs can reliably communicate the identities of herbivores is of interest. Here, we studied the tea plant volatiles induced by the tea leafhopper (Empoasca vitis, a piercing–sucking insect), the tea geometrid (Ectropis oblique, a chewing insect), and methyl jasmonate (MeJA, a plant hormone). Geometrid feeding induced more complex volatile blends than did leafhopper infestation. The volatiles induced by both herbivores significantly increased in quality and quantity with time during the first 16 h of infestation, after which the profiles of induced volatile blends and the emission of induced compounds varied diurnally. (E)-β-Ocimene displayed a unique rhythm in which emission peaked at night. The amount of HIPVs significantly increased, while their profiles changed little, with herbivore density. Overall, the leafhoppers and geometrids induced significantly different volatiles from tea plants, while the HIPV profiles varied with a circadian rhythm and were similar at different herbivore densities. Our findings also suggest a new method of enhancing tea flavor using exogenously applied plant hormones, because the volatiles induced by leafhoppers and MeJA were similar in general composition.     

Communication and coexistence in a coral community

A large number of biotic relationships among dissimilar organisms is characteristic of tropical coral reefs. Such relationships involve at least four of the 16 species associated with the coral Pocillopora damicornis (L.) at Heron Island on the Great Barrier Reef. Behavioural interactions among the most conspicuous resident species (2 fish, 1 crab and 1 shrimp) were studied in the field under natural and experimental conditions. The inhabitants have the potential to harass, capture and eat, or exclude one another from the coral habitat but a system of signals among the residents facilitates coexistence and maintains the integrity of the community. The signals include contact and shivering movements by the fish which apparently inform the crustaceans of the fish's resident status.     

Mass effects mediate coexistence in competing shrews

Recent developments in metacommunity theory have raised awareness that processes occurring at regional scales might interfere with local dynamics and affect conditions for the local coexistence of competing species. Four main paradigms are recognized in this context (namely, neutral, patch-dynamics, species-sorting, and mass-effect), which differ according to the role assigned to ecological or life-history differences among competing species, as well as to the relative time scale of regional vs. local dynamics. We investigated the patterns of regional and local coexistence of two species of shrews (Crocidura russula and Sorex coronatus) sharing a similar diet (generalist insectivores) over four generations, in a spatially structured habitat at the altitudinal limit of their distributions. Local populations were small, and regional dynamics were strong, with high rates of extinction and recolonization. Niche analysis revealed significant habitat differentiation on a few important variables, including temperature and availability of winter resting sites. In sites suitable for both species, we found instances of local coexistence with no evidence of competitive exclusion. Patterns of temporal succession did not differ from random, with no suggestion of a colonization-competition trade-off. Altogether, our data provide support for the mass-effect paradigm, where regional coexistence is mediated by specialization on different habitat types, and local coexistence by rescue effects from source sites. The strong regional dynamics and demographic stochasticity, together with high dispersal rates, presumably contributed to mass effects by overriding local differences in specific competitive abilities.     

Feeding selectivity and coexistence in two deposit-feeding gastropods

The diets of 2 ecologically similar deposit-feeding gastropods (Batillaria attramentaria and Cerithidea california) are described from 3 salt marsh localities in central California, USA. Gut contents revealed high similarity in dietary composition and a predominance of benthic diatoms. Sympatric and allopatric populations of the gastropods did not differ in diet. In both species, diatom food size increased with snail length with large B. attramentaria selecting longer diatom sizes than large C. californica. Size distributions of B. attramentaria differed in sympatric and allopatric populations. In sympatric populations, snail size classes which exhibited the greatest amounts of overlap in diatom size did not occur together. Effects of size-specific behavioral interactions in the gastropods may explain these differences.     

Interaction and impacts of two introduced species on a soft-sediment marine assemblage in SE Tasmania

Introduced species are having major impacts in terrestrial, freshwater and marine ecosystems world-wide. It is increasingly recognised that effects of multiple species often cannot be predicted from the effect of each species alone, due to complex interactions, but most investigations of invasion impacts have examined only one non-native species at a time and have not addressed the interactive effects of multiple species. We conducted a field experiment to compare the individual and combined effects of two introduced marine predators, the northern Pacific seastar Asterias amurensis and the European green crab Carcinus maenas, on a soft-sediment invertebrate assemblage in Tasmania. Spatial overlap in the distribution of these invaders is just beginning in Tasmania, and appears imminent as their respective ranges expand, suggesting a strong overlap in food resources will result from the shared proclivity for bivalve prey. A. amurensis and C. maenas provide good models to test the interaction between multiple introduced predators, because they leave clear predator-specific traces of their predatory activity for a number of common prey taxa (bivalves and gastropods). Our experiments demonstrate that both predators had a major effect on the abundance of bivalves, reducing populations of the commercial bivalves Fulvia tenuicostata and Katelysia rhytiphora. The interaction between C. maenas and A. amurensis appears to be one of resource competition, resulting in partitioning of bivalves according to size between predators, with A. amurensis consuming the large and C. maenas the small bivalves. At a large spatial scale, we predict that the combined effect on bivalves may be greater than that due to each predator alone simply because their combined distribution is likely to cover a broader range of habitats. At a smaller scale, in the shallow subtidal, where spatial overlap is expected to be most extensive, our results indicate the individual effects of each predator are likely to be modified in the presence of the other as densities increase. These results further highlight the need to consider the interactive effects of introduced species, especially with continued increases in the number of established invasions.Communicated by M.S. Johnson, Crawley