Microbial reaction rates and bacterial communities in sediment surrounding burrows of two nereidid polychaetes (Nereis diversicolor and N. virens)

The effects of infaunal mode of life on sediment properties, microbial reaction rates, as well as abundance and composition of bacterial communities were studied in sediment surrounding burrows (mucus lining, oxidised wall, ambient anoxic and surface sediment) of two closely related, but behaviourally different, nereidid polychaete worms: the facultative suspension-feeder Nereis (Hediste) diversicolor and the obligate deposit-feeder Nereis (Neanthes) virens. Burrow sediment of the two species was collected from two adjacent (50 m distance) shallow sandy locations (Kertinge Nor, Denmark). The burrow lining and wall of both polychaete species were enriched in organic matter originating from mucous secretions by the inhabitants and phytoplankton trapped through irrigation. This was more evident for N. diversicolor that shows a significantly higher irrigation rate than N. virens. Both the organic matter mineralisation rates (based on anaerobic incubations) and bacterial abundance were higher along the burrow linings and walls. However, accumulation of porewater TCO₂ and dissolved organic carbon in sediments adjacent to burrows increased most rapidly in the presence of N. diversicolor, suggesting higher heterotrophic activity associated with this species. Surprisingly, bacterial abundance was lower around burrows of N. diversicolor than those from N. virens indicating that burrow environments from the first species harbour a more active bacterial community. Molecular fingerprints of the 16S rRNA gene from bacterial communities showed that the composition of the burrow linings and walls resembled the ambient anoxic sediment rather than the oxic sediment surface. On the other hand, the bacterial fingerprints of the sediment surrounding the burrows of the two polychaete species were markedly different suggesting either a site-specific difference in sediment parameters or a significant species-specific impact of the burrow inhabitants.     

Coastal changes in the Ebro delta: Natural and human factors

The development of the delta of the River Ebro (Ebre) has, during recent centuries, been controlled by both natural and man-induced factors. Deforestation by man of the Ebro drainage basin favoured a fast progradation of the deltaic system until this century, when many dams were constructed along the river Ebro and its tributaries. As the sediment load of the river has been retained behind the dams, the river sediment discharge has been drastically reduced and erosive processes have become dominant in the Ebro delta coastal area, changing it from a river-wave to a sea-wave-dominated coast. This situation leads to a reshaping of the nearshore delta area and a redistribution of the pre-existing beach sediment, and significant erosion has already occurred in some zones. If these conditions continue in the future, severe changes will take place in the Ebro delta, in addition to the effects of a relative sea level rise. The future development of this delta may be similar to that of abandoned deltaic lobes, but faster. The present study shows, how coastal changes generated by anthropogenic factors can be faster and more drastic than those induced only by natural factors.     

Heavy Metal Pollution in Sediment from the Eastern Adriatic Coast,Croatia

Abstract

Sediment samples were collected from the Adriatic Sea in areas near large coastal towns along the eastern Adriatic coast (Zadar, [Ncirc]ibenik, Split, Plo?e and Dubrovnik).

Considerable quantities of untreated effluents are discharged via freshwater runoff and a variety of industrial waste waters, significantly affecting the quality of marine sediments.

Distribution of some trace metals (Pb, Cu, Ni, Cr, Zn, Mn, Cd, and Al) involved in problems related to metal pollution in Adriatic sediment were examined. Values are expressed as a total concentration of heavy metals of sediment dry weight.

Spatial distribution of some trace metal values in sediments and correlation of results for grain size effect were examined. the trace elements in marine sediments generally remain in the fine grained fraction, often in the silt-clay fraction. Higher values of heavy metals in some areas (Split, Sibenik) could be attributed to anthropogenic effects, i.e. to land-based activities. the main cause of higher values of some metals at open sea sites and in some coastal areas are probably caused naturally by sedimentation processes in those areas. Our results show that the sediments undoubtedly play a key role in determining the transport and ultimate fate of contaminants.     

Different response of bacterial community to the changes of nutrients and pollutants in sediments from an urban river network

• Bacterial community varied spatially in sediments from the urban river network. • Key environmental factors shaping bacterial community were detected by RDA. • Bacterial co-occurrence networks changed at different levels of nutrient and metal. • Potential indicator species were selected to predict pollution risk in sediment. Microbial communities in sediment are an important indicator linking to environmental pollution in urban river systems. However, how the diversity and structure of bacterial communities in sediments from an urban river network respond to different environmental factors has not been well studied. The goal of this study was to understand the patterns of bacterial communities in sediments from a highly dense urbanized river network in the lower Yangtze River Delta by Illumina MiSeq sequencing. The correlations between bacterial communities, the environmental gradient and geographical distance were analyzed by redundancy analysis (RDA) and network methods. The diversity and richness of bacterial community in sediments increased from upstream to downstream consistently with the accumulation of nutrient in the urban river network. Bacterial community composition and structure showed obvious spatial changes, leading to two distinct groups, which were significantly related to the characteristics of nutrient and heavy metal in sediments. Humic substance, available nitrogen, available phosphorus, Zn, Cu, Hg and As were selected as the key environmental factors shaping the bacterial community in sediments based on RDA. The co-occurrence patterns of bacterial networks showed that positive interaction between bacterial communities increased but the connectivity among bacterial genera and stability of sediment ecosystem reduced under a higher content of nutrient and heavy metal in average. The sensitive and ubiquitous taxa with an overproportional response to key environmental factors were detected as indicator species, which provided a novel method for the prediction of the pollution risk of sediment in an urban river network.     

Seasonal variability of intertidal bacterial metabolism and growth efficiency in an exposed sandy beach during low tide

Benthic gross primary production (GPP) and community respiration (BCR) were regularly measured on sandy beach sediment during low tide in a megatidal ecosystem. These measurements were assessed during 2 years in situ within a benthic chamber simultaneously with bacterial production (BP). Results suggested that community respiration in Wimereux sandy beach sediments was probably dominated by bacterial respiration and that the estimated benthic bacterial growth efficiency (BGE) was highly variable. Although temperature significantly controlled both BP and BCR during low tide at the annual scale, the temperature effect on BGE was not significant. The instability and sediment erosion caused by the wave action and the tidal cycle were thus thought to influence the BGE. Since the sampling site is regularly affected by Phaeocystis foam deposit (enhancing the BCR and decreasing the BGE), and since GPP rates were highly variable and supported by high assimilation numbers (i.e., >1 mgC mgChla ⁻¹ h⁻¹), phytoplankton organic matter deposit following the immersion of the study site was thought to explain the BGE variability.     

Spatial characteristics analysis by PCR-DGGE for bacterial communities in surface sediments of Tangxi River,Hefei City北大核心CSCD

Microbes play an important role in material circulation and pollutant release in urban sediments, and its community structure can provide an important basis for evaluating the pollution load and ecosystem health of an urban river. In this study, bacterial communities in sediments from different locations of Tangxi River in Anhui Province were analyzed and compared, with an objective of evaluating the effects of aquatic environment on spatial characteristics of bacterial communities and the feasibility of using bacterial community composition as an indicator of urban river health. PCR-DGGE was applied to analyze the bacterial communities; fifteen major bands of 16S rDNA genes fragments from DGGE profiles of sediment samples were further eluted from gel, reamplified and sequenced. The sequences of these fragments were compared with the database in GenBank (NCBI). The collected samples were clustered based on UPGM Aanalysis. In addition, relationships between bacterial communities and environmental factors were analyzed by Monte Carlo test and redundancy analysis (RDA). The DGGE profiles indicated that upstream surface sediments had about 30 bands, but the differences in brightness were not significant. Although midstream surface sediments had only 18 bands on average, the brightness of some bands was relatively high, indicating that some dominant species of bacteria existed in these sediments. The amounts of bands in downstream sediments were between those of upstream and midstream, with some bands of high brightness. The NCBI comparison results showed that ten sequences shared 98-100% homology with known sequences, one with 97%, and the other four with uncultured bacteria. Shannon index (H) of bacterial diversity from upstream surface sediments was 3.31 on average, which was significantly (P < 0.05) higher than that of midstream surface sediments, and slightly higher than that of downstream surface sediments. UPGMA results showed both the distribution of bacteria communities and the diversity were strongly related with the sampling locations (Eigenvalue = 0.188, P = 0.134). Monte Carlo test and RDA analysis showed that the ion exchangeable form of nitrogen (IEF-N) was the main factor influencing the spatial characteristics of bacterial communities in the sediments. The aquatic plants had a significant effect on the richness of bacterial communities in the sediments, and the effectiveness of plant species was more notable than that of the vegetation coverage. The above results indicated that bacterial community structure and diversity in the surface sediments can well reflect the degree of urbanization development and effectiveness of ecological restoration in Tangxi River region.     

Bioleaching of cadmium and nickel from synthetic sediments by Acidithiobacillus ferrooxidans

The microbial leaching process was evaluated for the treatment of synthetic sediments contaminated with cadmium and nickel sulfides. A series of batch leaching experiments was conducted to compare metal solubilization in sediment inoculated with Acidithiobacillus ferrooxidans -inoculated sediments to that in sterile control sediment. The rate and extent of metal solubilization were significantly higher in A. ferrooxidans -inoculated reactors than in acidified sterile reactors. The efficiency of cadmium (Cd) solubilization (80) in the bioleaching process was higher than that of nickel (Ni) solubilization (60). The performance of leaching reactors containing only culture supernatants was comparable to that of A. ferrooxidans -inoculated reactors, indicating that indirect non-contact leaching by the products of microbial metabolism is the predominant mechanism for metal solubilization rather than direct microbial sulfide oxidation. Moreover, the similar (60–75%) extents of Cd²⁺ leaching with A. ferrooxidans , cell-free filtrate, and Fe³⁺ suggest that abiotic oxidation of CdS by Fe³⁺ controls the overall leaching rate, and the role of A.␣ferrooxidans is most likely not to oxidize CdS mineral directly but to regenerate Fe³⁺ as an oxidant.     

Microbial Potential for the Anaerobic Transformation of Simple Homocyclic and Heterocyclic Compounds in Sediments of the Tsengwen River

The ability of microbial populations to mediate the anaerobic transformation of four aromatic compounds (aniline, benzoic acid, pyridine, and quinoline) in sediments of the Tsengwen River was examined. Along the river, from a freshwater (0.0° salinity) to an oceanic (37.0° salinity) environment, five sampling stations were chosen to collect the sediment. Sediment slurries were incubated in an anaerobic mineral salts medium that was amended with multiple electron acceptors, including manganese (IV) and ferric (III) oxides, and the concentrations of the aromatic substrates were followed over a 3- to 4-month period. Most sediment samples showed a complete loss of benzoic acid and quinoline (0.12–0.21 mM) within approximately three months. Pyridine was transformed after a lag period of 53 days in the sediment slurries from the freshwater environment which had been amended with both metal oxide (either Fe (OH)₃ or MnO₂) and inhibitor (either BESA or molybdate). Pyridine was not transformed in other sediment slurries. No significant metabolism of aniline was apparent in any of the sediments.     

Microbial RNA and DNA synthesis in marine sediments

A technique for measuring rates of RNA and DNA synthesis in sedimentary microbial communities has been adapted from methods developed for marine and freshwater microplankton research. The procedure measures the uptake, incorporation and turnover of exogenous [2, ³H]-adenine by benthic microbial populations. With minor modification, it is applicable to a wide range of sediment types. Measurement of nucleic acid synthesis rates are reported from selected benthic marine environments, including coral reef sediments (Kaneohe Bay, Oahu, Hawaii), intertidal beach sands (Oahu and southern California) and California borderland basin sediment (San Pedro Basin), and comparisons are made to selected water-column microbial communities. Biomass-specific rates of nucleic acid synthesis in sediment microbial communities were comparable to those observed in water-column assemblages (i.e., 0.02 to 2.0 pmol deoxyadenine incorporated into DNA [ng ATP]^-1 h^-1 and 0.2 to 8.9 pmol adenine incorporated into RNA [ng ATP]^-1 h^-1). DNA synthesis rates were used to calculate carbon production estimates ranging from 2 g C cm^-3 h^-1 in San Pedro Basin sediment (880 m water depth) to 807 g C cm^-3 h^-1 in coral reef sediment from the Kaneohe Bay. Microbial community specific growth rate, (d^-1), estimated from DNA synthesis rates in surface sediments ranged from 0.1 in San Pedro Basin to 4.2 in Scripps Beach (La Jolla, California) intertidal sand.     

Influence of the mineralogical composition on microbial activities in marine sediments: an experimental approach

We investigated the influence of the mineralogical composition of marine sediments on bacterial activity in experimental microcosms. Calcite and quartz were added to natural marine sediments and microbial response in terms of total bacterial abundance and biomass, β-D-glucosidase exo-enzymatic activity and bacterial incorporation of a radio-labelled (³H-leucine) substrate were investigated for a period of one month. We report here that after 15 days the mineralogical composition of the sediment (calcite vs. quartz) had an impact on bacterial abundance and activity (reduced for ca 15% and 56%, respectively). However, such impact was mitigated or even disappeared in high organic nutrient conditions.     

Bacterial communities of the marine sponges Hymeniacidon heliophila and Polymastia janeirensis and their environment in Rio de Janeiro, Brazil

In this study we performed a survey of the bacterial communities associated with the Western Atlantic demosponges Hymeniacidon heliophila and Polymastia janeirensis, based on 16S rRNA sequencing and transmission electron microscopy (TEM). We compared diversity and composition of the sponge-associated bacteria to those of environmental bacteria, represented by free-living bacterioplankton and by bacteria attached to organic particulate matter in superficial sediments. Partial bacterial 16S rRNA sequences from seawater, sediment, and sponges were retrieved by PCR, cloning, and sequencing. Sequences were subjected to rarefaction analyses, phylogenetic tree construction, and LIBSHUFF quantitative statistics to verify coverage and similarity between libraries. Community structure of the free-living bacterioplankton was phylogenetically different from that of the sponge-associated bacterial assemblages. On the other hand, some sediment-attached bacteria were also found in the sponge bacterial community, indicating that sponges may incorporate bacteria together with sediment particles. Rare and few prokaryotic morphotypes were found in TEM analyses of sponge mesohyl matrix of both species. Molecular data indicate that bacterial richness and diversity decreases from bacterioplankton, to particulate organic sediment, and to H. heliophila and P. janeirensis. Sponges from Rio de Janeiro harbor a pool of novel and exclusive sponge-associated bacterial taxa. Sponge-associated bacterial communities are composed of both taxons shared by many sponge groups and by species-specific bacteria.     

微生物和硬毛藻对天鹅湖不同湖区沉积物氮磷释放的影响

荣成天鹅湖为一天然瀉湖,近年来绿潮硬毛藻大量爆发,内源污染日益严重。以大型硬毛藻和不同湖区沉积物为试材,设置沉积物+水、沉积物+水(灭菌)、沉积物+水+藻、沉积物+水+藻(灭菌)4个处理,研究了不同微生物活性及藻类条件下上覆水体氮磷质量浓度的变化,同步监测水土界面DO和pH等理化参数,以探讨藻分解和微生物对天鹅湖不同湖区沉积物氮磷释放的影响,为藻华消亡过程中内源污染的治理提供理论依据。结果表明,微生物存在和硬毛藻分解可使水体氮质量浓度明显增加(P<0.05)。试验过程中,水体总氮在有藻和无藻条件下的质量浓度变幅分别为1.56-14.11 mg·L^?1和0.11-8.96 mg·L^?1,后期灭菌处理明显低于未灭菌处理。藻分解对水体磷质量浓度具有极显著影响(P<0.01),有藻条件下灭菌处理总磷质量浓度为0.31-1.27 mg·L^?1,未灭菌处理为0.27-1.41 mg·L^?1;而无藻条件下灭菌和未灭菌处理变幅分别为0.019-0.047 mg·L^?1和0.025-0.078 mg·L^?1。在天鹅湖,不同湖区沉积物氮磷的释放能力存在差异,水体氮质量浓度在有藻和无藻条件下均表现为西北部>湖中心>湖南部,磷质量浓度有藻条件下与氮一致,而无藻条件下则表现为湖中心>西北部>湖南部。湖中心沉积物处理水体营养盐浓度受微生物活性影响较大。3种因素对水体氮磷质量浓度的影响效应表现为:藻类>微生物>沉积物。可见,在藻类大量暴发且微生物活性较高的湖中心及西北部,沉积物氮磷的释放潜力较大,尤其在藻类堆积腐烂时期,应引起足够重视。     

A model of 90Sr distribution in the sea near Daya Bay Nuclear Power Plant in China

The impact on the environment ofradionuclide release from nuclear power plants has attracted increased attention, especially after the accident at Fukushima Daiichi Nuclear Power Plant in Japan. Based on the mechanisms of adsorption/desorption at solid/liquid interfaces and a surface micromorphology model of sediments, a theoretical expression of the distribution coefficient Kd is derived. This coefficient has significant effects on the distribution of radionuclide in seawater, suspended sediment and seabed sediment. Kd is then used to simulate ^90Sr transport in the sea near the Daya Bay Nuclear Power Plant. The simulation results are compared with field measurements of tidal level, current velocity, suspended sediment concentration and ^90Sr concentrations in the same period. Overall, the simulated results agree well with the field measured data. Thus, the derived expression for Ka is capable of interpreting realistic adsorption/desorption processes. What＇s more, conclusion is drawn that about 40% ^90Sr released by Daya Bay Nuclear Power Plant will be adsorbed by suspended sediment and 20% by seabed sediment, only about 40% ^90St will remain in the sea near Daya Bay Nuclear Power Plant in South China Sea.     

Comparison of extraction methods for polycyclic aromatic hydrocarbon determination in sediments

Different sample preparation methods for the determination of polycyclic aromatic hydrocarbons (PAHs) in lake and river sediments were compared and evaluated. Freeze‐dried sediment materials were extracted using Soxhlet extraction, ultrasonic agitation and digestion with various solvents and solvent mixtures. Similarly, clean‐up methods using various types of sorbents for separation of PAHs tested.

The following method gives the best results for the determination of PAHs: freeze‐dried sediment samples were extracted using Soxhlet extractor with dichloromethane (6 hr, dark), extracts were cleanup using Silica gel and a mixture of n‐hexa‐ne‐dichloromethane was used for the elution of PAHs.

This method was used for the determination of 7 selected PAHs in sediment samples from Finnish lakes and Czech streams.     

Biochemical composition and early diagenesis of organic matter in coastal sediments of the NW Adriatic Sea influenced by riverine inputs

River inputs influence trophodynamic and biogeochemical processes of adjacent continental shelves. In order to provide new insights on the influence of continental inputs on the benthic trophic state and early diagenesis of sediment organic matter we collected surface sediments in the NW Adriatic Sea at three stations located at increasing distance from the Po River. Sediment samples were collected in four periods characterized by different river outflows and analysed for chloropigment content (chlorophyll-a and phaeopygments), protein, carbohydrate and lipid concentrations, prokaryote abundance and aminopeptidase activity. Sediments of the NW Adriatic Sea displayed high organic loads, tightly coupled with the outflow dynamics of the Po River. A major flooding event was responsible of an enhanced accumulation of organic material on the sea bottom. The resulting increased nutrient load in the sediment impaired organic matter degradation processes. The results of the present study suggest that the enhanced trophic state of marine coastal sediments subjected to riverine inputs are related not only to the increased nutrient inputs, but that they may be amplified by impaired degradation processes.     

河流底泥施用对土壤微生物群落功能多样性和小麦生长的影响

设置0（对照）、20、60和100g·kg-1 3个底泥施用量水平,研究施用底泥对冬小麦籽粒Cd含量以及土壤微生物群落功能多样性的影响。结果表明,60和100g·kg-1底泥施用处理小麦穗质量和千粒重显著高于对照（P〈0．05）。各处理间小麦籽粒cd含量无显著差异。与对照相比,施用底泥并没有显著改变土壤中可培养细菌、真菌和放线菌的数量。整个培养过程中土壤微生物平均颜色变化率（IAWCD）以及96h时微生物多样性指数（Shannon指数、Simpson指数、McIntosh指数）在对照与底泥施用处理间无显著差异。主成分分析（PCA）表明,仅有占总变量方差14．22％的PC3能识别出对照土壤微生物群落碳源利用谱与底泥施用处理间的差异,而PCI（21．76％）、PC2（16．32％）和PC4（11．62％）则无法将对照与底泥施用处理区分开来。可见,该试验条件下合理的底泥施用量并不会对小麦籽粒Cd含量、微生物功能多样性和土壤质量产生显著影响。     

CO2 leakage simulation: effects of the pH decrease on fertilisation and larval development of Paracentrotus lividus and sediment metals toxicity

Carbon capture and storage has become a new mitigation option to reduce anthropogenic CO₂ emissions. The effects of the CO₂-related acidification, associated with unpredictable leaks of CO₂ during the operational phases were studied using the Paracentrotus lividus sea urchin-liquid-phase-assays (fertilisation and embryo-larval development tests). Besides to the direct effects of the CO₂-associated pH decrease, the possible effects on marine sediment toxicity were studied by exposing the urchin larvae to elutriate of sediments with different metals concentration, which were subjected to various pH treatments. The resulted median toxic effect pH ranged from 6.33?±?0.02 and 6.91?±?0.01 for the egg fertilisation, and between 6.66?±?0.03 and 7.16?±?0.01 for the larval development assays. Concentrations of Co, Zn, As, Cu, and Fe were detected in the sediment elutriates. For all the sediment elutriates tested the amount of the dissolved Zn increased in parallel with the pH reductions. Correlated effects of acidification, biological response, and the presence of dissolved metals were observed in this work evidencing that the most important factor controlling the reduction of egg fertilisation and larval development success was the combined effects of the reduction of pH and the presence of the contaminants (mainly Zn, Co, and As).     

Ecological risks of polycyclic aromatic hydrocarbons found in coastal sediments along the northern shores of the Bohai Sea (China)

The total concentrations of 16 United States Environmental Protection Agency (US EPA)-listed polycyclic aromatic hydrocarbons (PAHs) found in coastal and estuarine sediments along the northern shores of the Bohai and Yellow Seas, China, at any study location varied from 0.236 to 8.34 nM g^?1 dry weight (dw). For a given PAH, concentrations varied by one to two orders of magnitude. Ecological risk assessments based on biota–sediment accumulation factors (BSAFs) indicated that the potential ecological hazard of PAHs in the sediments was limited. The average total sediment PAH concentrations were less than the effects range low, indicating that PAHs currently present in the sediments were not harmful to aquatic organisms. The estimated PAH concentration in the aquatic organisms was 0.223 nM g^?1 and posed a limited threat to human health via biological concentration from sediment to harvest of the sea. Assuming no additional PAH inputs, 99% of the 16 PAH molecules currently present in the sediments would be degraded in 40 years.     

Mineralization of particulate organic matter derived from coral-reef organisms in reef sediments of the Gulf of Aqaba

In situ and laboratory incubation experiments in a fringing reef in the Gulf of Aqaba were performed to study degradation rates of particulate organic matter in reef sediments. Coral mucus, clam eggs, and zooxanthellae were used as model particulate organic compounds for these experiments. Aerobic and anaerobic mineralization rates were calculated by dissolved inorganic carbon (DIC) and O₂ fluxes from the sediments under different particulate organic matter additions. Fast enhancement (approximately twofold) of O₂ and DIC fluxes were found with the addition of coral mucus and clam eggs compared with control incubations without addition. Most of the degradation is believed to have occurred anaerobically rather than aerobically (DIC:O₂ ratios were 4.3–28.1). Higher degradation rates of coral mucus and clam eggs were estimated in carbonate sediment than in silicate sediment (1.2–1.6-fold), which was attributed to the different physical and chemical properties of both sediments. Our study shows the significance of the reef sediment as a suitable site for microbial degradation of particulate organic material excreted from different reef community organisms. This may increase the regeneration of nutrients in the reef environment necessary to sustain high biological productivity.     

铁在黄河底泥上吸附-絮凝-沉降的研究

通过静态吸附实验,研究了黄河底泥对水体中总铁的吸附,并研究了无机高分子絮凝剂(铁铝共聚物)对吸附产生的影响．结果表明,在黄河底泥对总铁的吸附过程中,pH值和底泥的浓度均会对吸附量产生很大影响．在其特征pH值吸附范围内,随着pH值的升高,吸附量相应增加．同时,在特定的pH值和底泥浓度下,随着总铁初始浓度的增加,吸附量也相应增加;而在总铁初始浓度不变的情况下,随着底泥浓度的增加,水体中平衡吸附量减少．结果还表明,絮凝剂的加入,可使黄河底泥对总铁的吸附量明显增加,从而提高水体中总铁的去除率．