Urban Impacts on Streams are Scale‐Dependent With Nonlinear Influences on Their Physical and Biotic Recovery in Vermont,United States1

Fitzgerald, Evan P., William B. Bowden, Samuel P. Parker, and Michael L. Kline, 2012. Urban Impacts on Streams Are Scale‐Dependent with Nonlinear Influences on Their Physical and Biotic Recovery in Vermont, United States. Journal of the American Water Resources Association (JAWRA) 48(4): 679‐697. DOI: 10.1111/j.1752‐1688.2012.00639.x Abstract: The physical and biological conditions of stream reaches in 16 watersheds within the Lake Champlain Basin of Vermont, United States, were assessed and analyzed for a response to total impervious area (TIA) at multiple spatial scales. Natural gradients (e.g., channel slope) and human impacts to channel boundary conditions (e.g., bank armoring) were considered to ensure a robust test of the Impervious Cover Model for upslope TIA. The response of geomorphic stability and sensitive macroinvertebrates to TIA was nonlinear and significant (p < 0.001), decreasing rapidly at 5% TIA. The effect of urbanization on stream condition was shown to interact significantly with drainage area and channel slope using the analysis of covariance (ANCOVA) (p < 0.05). Hydraulic geometry regressions for urban and rural watersheds and ANCOVA were used to describe a significant watershed scale‐dependent response of channel width to urbanization (p = 0.001). The analysis of macroinvertebrate data from reaches in different stages of channel evolution indicated that stable reaches supported greater richness of pollution intolerant species (p < 0.001) and overall taxa richness (p < 0.01) than unstable reaches, and that biotic integrity improves as channels regain stability during their evolution into a state of quasi‐equilibrium. We conclude that macroinvertebrate communities can respond positively to channel evolution processes leading to natural channel restabilization.     

Assessing Linkages in Stream Habitat,Geomorphic Condition,and Biological Integrity Using a Generalized Regression Neural Network

Watershed managers often use physical geomorphic and habitat assessments in making decisions about the biological integrity of a stream, and to reduce the cost and time for identifying stream stressors and developing mitigation strategies. Such analysis is difficult since the complex linkages between reach‐scale geomorphic and habitat conditions, and biological integrity are not fully understood. We evaluate the effectiveness of a generalized regression neural network (GRNN) to predict biological integrity using physical (i.e., geomorphic and habitat) stream‐reach assessment data. The method is first tested using geomorphic assessments to predict habitat condition for 1,292 stream reaches from the Vermont Agency of Natural Resources. The GRNN methodology outperforms linear regression (69% vs. 40% classified correctly) and improves slightly (70% correct) with additional data on channel evolution. Analysis of a subset of the reaches where physical assessments are used to predict biological integrity shows no significant linear correlation, however the GRNN predicted 48% of the fish health data and 23% of macroinvertebrate health. Although the GRNN is superior to linear regression, these results show linking physical and biological health remains challenging. Reasons for lack of agreement, including spatial and temporal scale differences, are discussed. We show the GRNN to be a data‐driven tool that can assist watershed managers with large quantities of complex, nonlinear data.     

Physical and ecological thresholds for deposited sediments in streams in agricultural landscapes

Excessive sedimentation in streams and rivers remains a pervasive problem for the protection of aquatic habitat and the sustainability of aquatic communities. Whereas water quality criteria have been determined for suspended sediments in many jurisdictions across North America, comparably little has been done for deposited (also known as bedded) sediments. Through Canada's National Agri-Environmental Standards Initiative, assessment techniques and analytical tools were developed for estimating environmental thresholds for deposited sediments in agricultural watersheds in New Brunswick (NB) and Prince Edward Island (PEI) in the Atlantic Maritimes of Canada. Physical thresholds were developed through assessment of geomorphic metrics, which were then analyzed using y-intercept and 25th percentile approaches. For NB, there was strong agreement in physical thresholds for both analytical approaches (e.g., percent fines <2 mm were 7.5 for y-intercept and 6.9 for 25th percentile approaches). In contrast, physical thresholds for PEI differed considerably between approaches (e.g., percent fines <2 mm were 6.1 for y-intercept and 19.6 for 25th percentile approaches), likely due to a narrower range in agricultural land cover. Cross-calibration of our provisional physical thresholds for NB with ecological (i.e., benthic macroinvertebrate) assessments show that ecological thresholds, calculated as change-points in relationships between Ephemeroptera-Plecoptera-Trichoptera relative abundance or Modified Family Biotic Index and geomorphic criteria, were more liberal than physical thresholds. These results suggest that provisional thresholds developed using geomorphic criteria should demarcate change from the least disturbed condition and reduce the risk of sedimentation degrading benthic ecosystems.     

Riparian Bird Communities as Indicators of Human Impacts Along Mediterranean Streams

Riparian areas link aquatic and terrestrial habitats, supporting species-rich bird communities, which integrate both terrestrial and aquatic processes. For this reason, inclusion of riparian birds in stream bioassessment could add to the information currently provided by existing programs that monitor aquatic organisms. To assess if bird community metrics could indicate stream conditions, we sampled breeding birds in the riparian zone of 37 reaches in 5 streams draining watersheds representing a gradient of agricultural intensity in central Italy. As a more direct indicator of water quality, stream macroinvertebrates were also sampled for computation of the Italian Extended Biotic Index (IBE). An anthropogenic index was calculated within 1 km of sampled reaches based on satellite-derived land-use classifications. Predictive models of macroinvertebrate integrity based on land-use and avian metrics were compared using an information-theoretic approach (AIC). We also determined if stream quality related to the detection of riverine species. Apparent bird species diversity and richness peaked at intermediate levels of land-use modification, but increased with IBE values. Water quality did not relate to the detection of riverine species as a guild, but two species, the dipper Cinclus cinclus and the grey wagtail Motacilla cinerea, were only observed in reaches with the highest IBE values. Small-bodied insectivorous birds and arboreal species were detected more often in reaches with better water quality and in less modified landscapes. In contrast, larger and granivorous species were more common in disturbed reaches. According to the information-theoretic approach, the best model for predicting water quality included the anthropogenic index, bird species diversity, and an index summarizing the trophic structure of the bird community. We conclude that, in combination with landscape-level information, the diversity and trophic structure of riparian bird communities could serve as a rapid indicator of stream-dwelling macroinvertebrates and, therefore, degradation of in-stream biotic integrity.     

Can Warmwater Streams Be Rehabilitated Using Watershed-Scale Standard Erosion Control Measures Alone?

Degradation of warmwater streams in agricultural landscapes is a pervasive problem, and reports of restoration effectiveness based on monitoring data are rare. Described is the outcome of rehabilitation of two deeply incised, unstable sand-and-gravel-bed streams. Channel networks of both watersheds were treated using standard erosion control measures, and aquatic habitats within 1-km-long reaches of each stream were further treated by addition of instream structures and planting woody vegetation on banks (“habitat rehabilitation”). Fish and their habitats were sampled semiannually during 1–2 years before rehabilitation, 3–4 years after rehabilitation, and 10–11 years after rehabilitation. Reaches with only erosion control measures located upstream from the habitat measure reaches and in similar streams in adjacent watersheds were sampled concurrently. Sediment concentrations declined steeply throughout both watersheds, with means ≥40% lower during the post-rehabilitation period than before. Physical effects of habitat rehabilitation were persistent through time, with pool habitat availability much higher in rehabilitated reaches than elsewhere. Fish community structure responded with major shifts in relative species abundance: as pool habitats increased after rehabilitation, small-bodied generalists and opportunists declined as certain piscivores and larger-bodied species such as centrarchids and catostomids increased. Reaches without habitat rehabilitation were significantly shallower, and fish populations there were similar to the rehabilitated reaches prior to treatment. These findings are applicable to incised, warmwater streams draining agricultural watersheds similar to those we studied. Rehabilitation of warmwater stream ecosystems is possible with current knowledge, but a major shift in stream corridor management strategies will be needed to reverse ongoing degradation trends. Apparently, conventional channel erosion controls without instream habitat measures are ineffective tools for ecosystem restoration in incised, warmwater streams of the Southeastern U.S., even if applied at the watershed scale and accompanied by significant reductions in suspended sediment concentration.     

VARIABILITY IN MEASURES OF MACROINVERTEBRATE COMMUNITY STRUCTURE BY STREAM REACH AND STREAM CLASS1

ABSTRACT: Macroinvertebrate community data collected from streams in Wyoming were assessed at various scales: within one stream reach, between stream reaches within one stream, between streams, and between stream classes. Fourteen indices including number of individuals/m², biomass/m², number of taxa, Shannon's diversity index, and functional feeding group ratios were used to compare macroinvertebrates by stream reach and stream class. Statistical analysis indicated that for five of the 14 indices, significant variability occurred between macroinvertebrate communities within one reach. For two of the remaining nine indices there was significant variability between communities from several reaches within the same stream. For seven of the nine indices, there was significant variability among macroinvertebrate communities from streams of the same class. Variability among the macroinvertebrate communities from the three stream classes was significantly different for seven of the nine indices. ANOVA results suggest that macroinvertebrate communities from different samples within one reach and between reaches within one stream were more comparable than those from different streams and different stream classes.     

Effects of Management Legacies on Stream Fish and Aquatic Benthic Macroinvertebrate Assemblages

Fish and benthic macroinvertebrate assemblages often provide insight on ecological conditions for guiding management actions. Unfortunately, land use and management legacies can constrain the structure of biotic communities such that they fail to reflect habitat quality. The purpose of this study was to describe patterns in fish and benthic macroinvertebrate assemblage structure, and evaluate relationships between biota and habitat characteristics in the Chariton River system of south-central Iowa, a system likely influenced by various potential management legacies (e.g., dams, chemical removal of fishes). We sampled fishes, benthic macroinvertebrates, and physical habitat from a total of 38 stream reaches in the Chariton River watershed during 2002–2005. Fish and benthic macroinvertebrate assemblages were dominated by generalist species tolerant of poor habitat quality; assemblages failed to show any apparent patterns with regard to stream size or longitudinal location within the watershed. Metrics used to summarize fish assemblages and populations [e.g., presence–absence, relative abundance, Index of Biotic Integrity for fish (IBI_F)] were not related to habitat characteristics, except that catch rates of piscivores were positively related to the depth and the amount of large wood. In contrast, family richness of benthic macroinvertebrates, richness of Ephemeroptera, Trichoptera, and Plecoptera taxa, and IBI values for benthic macroinvertebrates (IBI_BM) were positively correlated with the amount of overhanging vegetation and inversely related to the percentage of fine substrate. A long history of habitat alteration by row-crop agriculture and management legacies associated with reservoir construction has likely resulted in a fish assemblage dominated by tolerant species. Intolerant and sensitive fish species have not recolonized streams due to downstream movement barriers (i.e., dams). In contrast, aquatic insect assemblages reflected aquatic habitat, particularly the amount of overhanging vegetation and fine sediment. This research illustrates the importance of using multiple taxa for biological assessments and the need to consider management legacies when investigating responses to management and conservation actions.     

Rapid Geomorphic and Habitat Stream Assessment Techniques Inform Restoration Differently Based on Levels of Stream Disturbance

Visual‐based rapid assessment techniques provide an efficient method for characterizing the restoration potential of streams, with many focusing on channel stability and instream habitat features. Few studies, however, have compared these techniques to see if they result in differing restoration priorities. Three rapid assessment techniques were contrasted at three wild trout streams in western New York with different amounts of channel disturbance. Two methods focused only on geomorphic stability, whereas the third addressed physical habitat condition. Habitat assessment scores were not correlated with scores for either geomorphic assessment method and they varied more between channels with different degrees of disturbance. A model based on dynamic equilibrium concepts best explains the variation among the streams and techniques because it accounts for a stream's capacity to maintain ecological integrity despite some inherent instability. Geomorphic indices can serve as effective proxies for biological indices in highly disturbed systems. Yet, this may not be the case in less disturbed systems, where geomorphic indices cannot differentiate channel adjustments that impact biota from those that do not. Dynamically stable streams can include both stable and unstable reaches locally as characterized by geomorphic methods and translating these results into restoration priorities may not be appropriate if interpretations are limited to the reach scale.     

Assessment Tools for Urban Catchments: Developing Biological Indicators Based on Benthic Macroinvertebrates1

Abstract: Biological indicators, particularly benthic macroinvertebrates, are widely used and effective measures of the impact of urbanization on stream ecosystems. A multimetric biological index of urbanization was developed using a large benthic macroinvertebrate dataset (n = 1,835) from the Baltimore, Maryland, metropolitan area and then validated with datasets from Cleveland, Ohio (n = 79); San Jose, California (n = 85); and a different subset of the Baltimore data (n = 85). The biological metrics used to develop the multimetric index were selected using several criteria and were required to represent ecological attributes of macroinvertebrate assemblages including taxonomic composition and richness (number of taxa in the insect orders of Ephemeroptera, Plecoptera, and Trichoptera), functional feeding group (number of taxa designated as filterers), and habit (percent of individuals which cling to the substrate). Quantile regression was used to select metrics and characterize the relationship between the final biological index and an urban gradient (composed of population density, road density, and urban land use). Although more complex biological indices exist, this simplified multimetric index showed a consistent relationship between biological indicators and urban conditions (as measured by quantile regression) in three climatic regions of the United States and can serve as an assessment tool for environmental managers to prioritize urban stream sites for restoration and protection.     

In search of effective scales for stream management: does agroecoregion,watershed, or their intersection best explain the variance in stream macroinvertebrate communities?

Our lack of understanding of relationships between stream biotic communities and surrounding landscape conditions makes it difficult to determine the spatial scale at which management practices are best assessed. We investigated these relationships in the Minnesota River Basin, which is divided into major watersheds and agroecoregions which are based on soil type, geologic parent material, landscape slope steepness, and climatic factors affecting crop productivity. We collected macroinvertebrate and stream habitat data from 68 tributaries among three major watersheds and two agroecoregions. We tested the effectiveness of the two landscape classification systems (i.e., watershed, agroecoregion) in explaining variance in habitat and macroinvertebrate metrics, and analyzed the relative influence on macroinvertebrates of local habitat versus regional characteristics. Macroinvertebrate community composition was most strongly influenced by local habitat; the variance in habitat conditions was best explained at the scale of intersection of major watershed and agroecoregion (i.e., stream habitat conditions were most homogeneous within the physical regions of intersection of these two landscape classification systems). Our results are consistent with findings of other authors that most variation in macroinvertebrate community data from large agricultural catchments is attributable to local physical conditions. Our results are the first to test the hypothesis and demonstrate that the scale of intersection best explains these variances. The results suggest that management practices adjusted for both watershed and ecoregion characteristics, with the goal of improving physical habitat characteristics of local streams, may lead to better basin-wide water quality conditions and stream biological integrity.     

Effects of Bioengineered Streambank Stabilization on Bank Habitat and Macroinvertebrates in Urban Streams

Non-structural streambank stabilization, or bioengineering, is a common stream restoration practice used to slow streambank erosion, but its ecological effects have rarely been assessed. We surveyed bank habitat and sampled bank macroinvertebrates at four bioengineered sites, an unrestored site, and a comparatively less-impacted reference site in the urban Peachtree-Nancy Creek catchment in Atlanta, GA, USA. The amount of organic bank habitat (wood and roots) was much higher at the reference site and three of the bioengineered sites than at the unrestored site or the other bioengineered site, where a very different bioengineering technique was used (“joint planting”). At all sites, we saw a high abundance of pollution-tolerant taxa, especially chironomids and oligochaetes, and a low richness and diversity of the bank macroinvertebrate community. Total biomass, insect biomass, and non-chironomid insect biomass were highest at the reference site and two of the bioengineered sites (p < 0.05). Higher biomass and abundance were found on organic habitats (wood and roots) versus inorganic habitats (mud, sand, and rock) across all sites. Percent organic bank habitat at each site proved to be strongly positively correlated with many factors, including taxon richness, total biomass, and shredder biomass. These results suggest that bioengineered bank stabilization can have positive effects on bank habitat and macroinvertebrate communities in urban streams, but it cannot completely mitigate the impacts of urbanization.     

An Evaluation of Qualitative Indexes of Physical Habitat Applied to Agricultural Streams in Ten U.S. States1

Hughes, Robert M., Alan T. Herlihy, and Philip R. Kaufmann, 2010. An Evaluation of Qualitative Indexes of Physical Habitat Applied to Agricultural Streams in Ten U.S. States. Journal of the American Water Resources Association (JAWRA) 46(4): 792-806. DOI: 10.1111/j.1752-1688.2010.00455.x Abstract: Assessment of stream physical habitat condition is important for evaluating stream quality globally. However, the diversity of metrics and methods for assessing physical habitat condition confounds comparisons among practitioners. We surveyed 51 previously sampled stream sites (0.0-6.3 m wide) located in regions of row-crop agriculture in Oregon, California, North Dakota, South Dakota, Nebraska, Iowa, Minnesota, Pennsylvania, Maryland, and West Virginia to evaluate the comparability of four indexes of physical habitat condition relative to each other. We also compared the indexes to previously calculated indexes of fish and macroinvertebrate condition. The physical habitat indexes included the Stream Visual Assessment Protocol Version 2 of the Natural Resources Conservation Service, the qualitative habitat evaluation index of the Ohio Environmental Protection Agency, the rapid bioassessment protocol of the United States Environmental Protection Agency (USEPA), and a qualitative physical habitat index based on USEPA quantitative physical habitat measurements. All four indexes were highly correlated with each other, but low-to-moderately correlated with biotic index scores for fish and macroinvertebrate assemblages. Moderately high correlations occurred between some macroinvertebrate biotic index scores and quantitative metrics. We conclude that additional research is needed to increase the predictive and diagnostic capabilities of qualitative physical habitat indexes.     

Biological Assessment to Support Ecological Recovery of a Degraded Headwater System

An assessment of the benthic macroinvertebrate community was conducted to characterize the ecological recovery of a channelized main stem and two small tributaries at the Watershed Research and Education Center (WREC, Arkansas, USA). Three other headwater streams in the same basin were also sampled as controls and for biological reference information. A principal components analysis produced stream groupings along an overall gradient of physical habitat integrity, with degraded reaches showing lower RBP habitat scores, reduced flow velocities, smaller substrate sizes, greater conductivity, and higher percentages of sand and silt substrate. The benthic macroinvertebrate assemblage at WREC was dominated by fast-reproducing dipteran larvae (midge and mosquito larvae) and physid snails, which comprised 71.3% of the total macroinvertebrate abundance over three sampling periods. Several macroinvertebrate assemblage metrics should provide effective targets for monitoring overall improvements in the invertebrate assemblage including recovery towards a more complex food web (e.g., total number of taxa, number of EPT taxa, percent 2 dominant taxa). However, current habitat conditions and the extent of existing degradation, system isolation and surrounding urban or agricultural land-uses might affect the level of positive change to the system. We therefore suggest a preliminary restoration strategy involving the addition of pool habitats in the system. At one pool we collected a total of 29 taxa (dominated by water beetle predators), which was 59% of total number of taxa collected at WREC. Maintaining water-retentive pools to collect flows and maintain water permanence focuses on enhancing known biology and habitat, thus reducing the effects of abiotic filters on macroinvertebrate assemblage recovery. Furthermore, biological assessment prior to restoration supports a strategy primarily focused on improving the existing macroinvertebrate community in the current context of the system, thereby reducing costs associated with active channel restoration. Monitoring future biological recovery and determining the contribution of changing assemblages to specific ecological processes would provide a critical underpinning for adaptive management and ecologically-effective restoration.     

Prioritizing Stream Barrier Removal to Maximize Connected Aquatic Habitat and Minimize Water Scarcity

Instream barriers, such as dams, culverts, and diversions, alter hydrologic processes and aquatic habitat. Removing uneconomical and aging instream barriers is increasingly used for river restoration. Historically, selection of barrier removal projects used score‐and‐rank techniques, ignoring cumulative change and the spatial structure of stream networks. Likewise, most water supply models prioritize either human water uses or aquatic habitat, failing to incorporate both human and environmental water use benefits. Here, a dual‐objective optimization model identifies barriers to remove that maximize connected aquatic habitat and minimize water scarcity. Aquatic habitat is measured using monthly average streamflow, temperature, channel gradient, and geomorphic condition as indicators of aquatic habitat suitability. Water scarcity costs are minimized using economic penalty functions while a budget constraint specifies the money available to remove barriers. We demonstrate the approach using a case study in Utah's Weber Basin to prioritize removal of instream barriers for Bonneville cutthroat trout, while maintaining human water uses. Removing 54 instream barriers reconnects about 160 km of quality‐weighted habitat and costs approximately US$10 M. After this point, the cost‐effectiveness of removing barriers to connect river habitat decreases. The modeling approach expands barrier removal optimization methods by explicitly including both economic and environmental water uses.     

A Daily Time Series Analysis of StreamWater Phosphorus Concentrations Along an Urban to Forest Gradient

During a 1-year period, we sampled stream water total phosphorus (TP) concentrations daily and soluble reactive phosphorus (SRP) concentrations weekly in four Seattle area streams spanning a gradient of forested to urban-dominated land cover. The objective of this study was to develop time series models describing stream water phosphorus concentration dependence on seasonal variation in stream base flows, short-term flow fluctuations, antecedent flow conditions, and rainfall. Stream water SRP concentrations varied on average by ±18% or ±5.7 μg/L from one week to another, whereas TP varied ±48% or ±32.5 μg/L from one week to another. On average, SRP constituted about 47% of TP. Stream water SRP concentrations followed a simple sine-wave annual cycle with high concentrations during the low-flow summer period and low concentrations during the high-flow winter period in three of the four study sites. These trends are probably due to seasonal variation in the relative contributions of groundwater and subsurface flows to stream flow. In forested Issaquah Creek, SRP concentrations were relatively constant throughout the year except during the fall, when a major salmon spawning run occurred in the stream and SRP concentrations increased markedly. Stream water SRP concentrations were statistically unrelated to short-term flow fluctuations, antecedent flow conditions, or rainfall in each of the study streams. Stream water TP concentrations are highly variable and strongly influenced by short-term flow fluctuations. Each of the processes assessed had statistically significant correlations with TP concentrations, with seasonal base flow being the strongest, followed by antecedent flow conditions, short-term flow fluctuations, and rainfall. Times series models for each individual stream were able to predict ∼70% of the variability in the SRP annual cycle in three of the four streams (r² = 0.57–0.81), whereas individual TP models explained ∼50% of the annual cycle in all streams (r² = 0.39–0.59). Overall, time series models for SRP and TP dynamics explained 82% and 76% of the variability for these variables, respectively. Our results indicate that SRP, the most biologically available and therefore most important phosphorus fraction, has simpler and easier-to-predict seasonal and weekly dynamics.     

CHANNEL MODIFICATION AND MACROINVERTEBRATE COMMUNITY DIVERSITY IN SMALL STREAMS1

ABSTRACT: The principal objective of this study was to investigate the long-term, temporal effect of channel modification in the diversity of macroinvertebrates. Correlation analyses suggest that aquatic macroinvertebrate communities stabilize shortly after channel modification. This conclusion is based on correlation analyses including five widely accepted diversity indices for stream reaches that have undergone channel work from less than 1 year to more than 30 years prior to the study.     

A Method and Rationale for Deriving Nutrient Criteria for Small Rivers and Streams in Ohio

A mechanistic understanding of the effects of nutrient enrichment in lotic systems has been advanced over the last two decades such that identification of management thresholds for the prevention of eutrophication is now possible. This study describes relationships among primary nutrients (phosphorus and nitrogen), benthic chlorophyll a concentrations, daily dissolved oxygen (DO) concentrations, and the condition of macroinvertebrate and fish communities in small rivers and streams in Ohio, USA. Clear associations between nutrients, secondary response indicators (i.e., benthic chlorophyll and DO), and biological condition were found, and change points between the various indicators were identified for use in water quality criteria for nutrients in small rivers and streams (<1300 km²). A change point in benthic chlorophyll a density was detected at an inorganic nitrogen concentration of 0.435 mg/l (±0.599 SD), and a total phosphorus (TP) concentration of 0.038 mg/l (±0.085 SD). Daily variation in DO concentration was significantly related to benthic chlorophyll concentration and canopy cover, and a change point in 24-h DO concentration range was detected at a benthic chlorophyll level of 182 mg/m². The condition of macroinvertebrate communities was related to benthic chlorophyll concentration and both minimum and 24-h range of DO concentration. The condition of fish communities was best explained by habitat quality. The thresholds found in relationships between the stressor and the response variables, when interpreted in light of the uncertainty surrounding individual change points, may now serve as a framework for nutrient criteria in water quality standards.