Genetics, Taxonomy, and Conservation of the Threatened California Gnatcatcher

Abstract: The California Gnatcatcher (   Polioptila californica ) has become a flagship species in the dispute over development of southern California's unique coastal sage scrub habitat, a fragile, geographically restricted ecosystem with high endemism. One aspect of the controversy concerns the status of the subspecies of this bird in southern California coastal sage scrub that is currently listed as threatened under the U.S. Endangered Species Act. To investigate the recent population history of this species and the genetic distinctiveness of subspecies and to inform conservation planning, we used direct sequencing of mitochondrial DNA (mtDNA) for 64 individuals from 13 samples taken throughout the species' range. We found that coastal sage scrub populations of California Gnatcatchers are not genetically distinct from populations in Baja California, which are dense and continuously distributed throughout the peninsula. Rather, mtDNA sequences from this species contain the signatures of population growth and support a hypothesis of recent expansion of populations from a southern Baja California refugium northward into the southern coastal regions of California. During this expansion, stochastic events led to a reduction in genetic variation in the newly occupied range. Thus, preservation of coastal sage scrub cannot be linked to maintaining the genetic diversity of northern gnatcatcher populations, despite previous recognition of subspecies. Our study suggests that not all currently recognized subspecies are equivalent to evolutionarily significant units and illustrates the danger of focusing conservation efforts for threatened habitats on a single species.     

Conservation and management-oriented ecological research in the coastal zone of Baja California, Mexico

This paper presents the main results of two studies of contrasting natural and man-induced conditions along the Pacific coast of Baja California (Mexico), based on the assumption that ecological insight can be obtained from man-induced modifications insofar as relevant activities are explicitly addressed as parts of the systems under study. The study is concerned with a fragmented coastal succulent-sage scrub and showed that several patches of different size and age may harbor as many species as non-fragmented areas, and that 83% of the original species assemblage persisted in the fragments, in which the invasion by opportunistic exotic species may not progress beyond certain limits. The study of dune-backed and urban-backed beaches showed a significantly greater abundance of the Snowy Plover (Charadrius alexandrinus) at the dune-backed beach, where a much more active back-shore feeding of adult birds and the only evidences of breeding occurred. Both studies refer to landscape features of regional concern and its results may be used in conservation management. The results on fragmented coastal succulentsage scrub may encourage alternative urban designs that keep patches of the original landscape, thus meeting existing requirements of low density urban development for most of the coastal succulent-sage scrub area. The evidence presented on the negative effects of dune destruction on the abundance, feeding and reproductive performance of a threatened bird species has a bearing on the topic of biodiversity management. It may also contribute to the conservation of the coastal dunes system.     

Evaluating the California Gnatcatcher as an Umbrella Species for Conservation of Southern California Coastal Sage Scrub

Abstract: Designing reserves that preserve the habitat of many coexisting and threatened species often involves use of conservation surrogates, such as umbrella species. Typically, animals with legal protection are used as umbrella species, and these selections are overwhelmingly vertebrates. The tacit assumption that vertebrates automatically serve as conservation umbrellas for invertebrates rarely has been justified. The California Gnatcatcher (   Polioptila californica, Muscicapidae ), is a federally listed and endangered species in the United States and has been used as an umbrella species for the conservation of coastal sage scrub in southern California. Conservation planning efforts for this community follow a general paradigm of using vertebrate-based reserve designs as de facto protection for invertebrate cohabitants. To test the effectiveness of this strategy, I surveyed 50 patches of coastal sage scrub in San Diego County for three species of Lepidoptera: Mormon metalmark ( Apodemia mormo, Riodinidae ), Bernardino blue, (   Euphilotes bernardino, Lycaenidae ), and Electra buckmoth (    Hemileuca electra, Saturniidae ). The presence of the gnatcatcher was a poor indicator of the presence of these insects. Only the largest or most recently separated habitat patches supported all three species of Lepidoptera, but the gnatcatcher was present on nearly every site, regardless of size. Results indicate that vertebrates do not automatically function as umbrella species for invertebrate cohabitants. Reserve designs based on vertebrate umbrella species, which assume invertebrates will be protected, may result in the loss of a large portion of invertebrate diversity.     

An Empirical Assessment of the Focal Species Hypothesis

Biodiversity surrogates and indicators are commonly used in conservation management. The focal species approach (FSA) is one method for identifying biodiversity surrogates, and it is underpinned by the hypothesis that management aimed at a particular focal species will confer protection on co‐occurring species. This concept has been the subject of much debate, in part because the validity of the FSA has not been subject to detailed empirical assessment of the extent to which a given focal species actually co‐occurs with other species in an assemblage. To address this knowledge gap, we used large‐scale, long‐term data sets of temperate woodland birds to select focal species associated with threatening processes such as habitat isolation and loss of key vegetation attributes. We quantified co‐occurrence patterns among focal species, species in the wider bird assemblage, and species of conservation concern. Some, but not all, focal species were associated with high levels of species richness. One of our selected focal species was negatively associated with the occurrence of other species (i.e., it was an antisurrogate)—a previously undescribed property of nominated focal species. Furthermore, combinations of focal species were not associated with substantially elevated levels of bird species richness, relative to levels associated with individual species. Our results suggest that although there is some merit to the underpinning concept of the FSA, there is also a need to ensure that actions are sufficiently flexible because management tightly focused on a given focal species may not benefit some other species, including species of conservation concern, such of which might not occur in species‐rich assemblages. Una Evaluación Empírica de la Hipótesis de Especie Focal     

Effects of Land Use on Bird Species Richness in Sulawesi, Indonesia

Abstract:  There is still much debate over the potential value of land-use systems for the maintenance of tropical biodiversity. An increasing number of studies indicate that much forest biodiversity can also be found in the agricultural landscape matrix. Because there is little information on the potential value of land-use systems for tropical forest bird species, we conducted repeated point counts in near-primary forest, adjacent young secondary forest, modernized cacao agroforestry systems, and annual cultures at submontane elevations in central Sulawesi, Indonesia. Species richness decreased from natural forest and young secondary forest to agroforestry systems and annual cultures. Although species richness was similar between natural and young secondary forest, the number of endemic bird species was significantly lower in second-growth forest. Species composition gradually changed as the habitat changed from natural to secondary forest, agroforestry systems, and annual cultures. Despite close proximity to near-primary forest, the agroforestry systems studied supported only a few small frugivorous-nectarivorous species. Our results suggest that secondary forest could play an important role in the conservation of many Sulawesi bird species, but, although suitable for colonization, its potential to sustain populations over the long term is unknown. Improvement of the landscape matrix for biodiversity conservation through secondary habitats therefore seems desirable to enlarge the ranges of forest species, but the fight against land conversion within protected areas of the region should be of much higher importance, at least at present.     

Effects of Habitat Fragmentation on Bird Species in a Relict Temperate Forest in Semiarid Chile

Abstract: We analyzed the structure and composition of a bird assemblage in a fragmented relict temperate forest located in northcentral Chile ( Fray Jorge National Park). In terms of species composition, the bird assemblage we found in Fray Jorge was more similar to southern temperate forest sites, located more than 1200 km south of Fray Jorge, than to localities found in nearby scrub habitats. The relict character and long-term isolation of the Fray Jorge forest provides a natural experiment with which to establish the potential long-term effects of fragmentation and isolation on southern Chilean temperate forests. Between May 1996 and March 1997, we conducted seasonal surveys of birds in six forest fragments, ranging in size from 0.5 to 22.5 ha, at Fray Jorge. The number of bird species at each forest fragment was positively correlated with fragment area during all seasons. The relict forest system had a steeper species-area slope than that reported for similar temperate-forest bird assemblages in forest fragments within Chiloé Island and for islands across the Chiloé Archipelago in southern Chile. In this regard, this bird fauna resembled a depauperate oceanic archipelago. This difference in area effects is likely a consequence of the minimization of rescue effects because of the absence of large source forest areas nearby and the long-term isolation of the system. In addition, the distribution of species among forest fragments in Fray Jorge was not random, showing a nested subset pattern. Thus, some species occur across all fragments, regardless of their area, and therefore are less affected by habitat fragmentation and less prone to local extinction. These results suggest that, for south-temperate forest birds, large fragments (or reserves) should afford better protection against extinction than small forest patches.     

The width of riparian habitats for understory birds in an Amazonian forest

Riparian habitats are important for the maintenance of regional biodiversity. Many studies have compared bird distributions between riparian and non-riparian habitats but have not established how wide riparian habitats used by birds are, as measured by distance from the nearest stream. We investigated the distribution of understory birds along gradients of distance from streams, soil clay content, and slope in a central Amazonian forest, by mist-netting birds three times in 45 plots. We used nonmetric multidimensional scaling (NMDS) to reduce the dimensionality of species quantitative (abundance) and qualitative (presence-absence) composition to one multivariate axis. Estimates of the width of riparian habitats as indicated by understory birds depended on the community attribute considered, measuring 90 m for species quantitative composition and 140 m for species qualitative composition. Species distributions were correlated with clay content but were independent of slope, while distance from streams was positively correlated with clay content but independent of slope. Clay content affects plant species composition, which in turn, may influence bird species composition. However, distribution patterns of birds in relation to distance from streams are consistent among studies carried out in many different temperate and tropical regions, indicating an effect of distance from streams itself. Protection of riparian habitats is one of the most widely used conservation strategies, and Brazilian environmental legislation mandates the protection of a 30 m wide strip of riparian vegetation on either side of small streams. We show that the protected strip should be much wider and recommend strategies to place other forms of land protection contiguous with riparian areas so that Brazilian environmental legislation better fulfills its role of protecting biodiversity associated with riparian habitats.     

Biodiversity Loss in Latin American Coffee Landscapes: Review of the Evidence on Ants,Birds, and Trees

Abstract: Studies have documented biodiversity losses due to intensification of coffee management (reduction in canopy richness and complexity). Nevertheless, questions remain regarding relative sensitivity of different taxa, habitat specialists, and functional groups, and whether implications for biodiversity conservation vary across regions. We quantitatively reviewed data from ant, bird, and tree biodiversity studies in coffee agroecosystems to address the following questions: Does species richness decline with intensification or with individual vegetation characteristics? Are there significant losses of species richness in coffee‐management systems compared with forests? Is species loss greater for forest species or for particular functional groups? and Are ants or birds more strongly affected by intensification? Across studies, ant and bird richness declined with management intensification and with changes in vegetation. Species richness of all ants and birds and of forest ant and bird species was lower in most coffee agroecosystems than in forests, but rustic coffee (grown under native forest canopies) had equal or greater ant and bird richness than nearby forests. Sun coffee (grown without canopy trees) sustained the highest species losses, and species loss of forest ant, bird, and tree species increased with management intensity. Losses of ant and bird species were similar, although losses of forest ants were more drastic in rustic coffee. Richness of migratory birds and of birds that forage across vegetation strata was less affected by intensification than richness of resident, canopy, and understory bird species. Rustic farms protected more species than other coffee systems, and loss of species depended greatly on habitat specialization and functional traits. We recommend that forest be protected, rustic coffee be promoted, and intensive coffee farms be restored by augmenting native tree density and richness and allowing growth of epiphytes. We also recommend that future research focus on potential trade‐offs between biodiversity conservation and farmer livelihoods stemming from coffee production.     

Patterns of animal diversity in different forms of tree cover in agricultural landscapes.

As tropical regions are converted to agriculture, conservation of biodiversity will depend not only on the maintenance of protected forest areas, but also on the scope for conservation within the agricultural matrix in which they are embedded. Tree cover typically retained in agricultural landscapes in the neotropics may provide resources and habitats for animals, but little is known about the extent to which it contributes to conservation of animal species. Here, we explore the animal diversity associated with different forms of tree cover for birds, bats, butterflies, and dung beetles in a pastoral landscape in Nicaragua. We measured species richness and abundance of these four animal taxa in riparian and secondary forest, forest fallows, live fences, and pastures with high and low tree cover. We recorded over 20,000 individuals of 189 species including 14 endangered bird species. Mean abundance and species richness of birds and bats, but not dung beetles or butterflies, were significantly different among forms of tree cover. Species richness of bats and birds was positively correlated with tree species richness. While the greatest numbers of bird species were associated with riparian and secondary forest, forest fallows, and pastures with >15% tree cover, the greatest numbers of bat species were found in live fences and riparian forest. Species assemblages of all animal taxa were different among tree cover types, so that maintaining a diversity of forms of tree cover led to conservation of more animal species in the landscape as a whole. Overall, the findings indicate that retaining tree cover within agricultural landscapes can help conserve animal diversity, but that conservation efforts need to target forms of tree cover that conserve the taxa that are of interest locally. Preventing the degradation of remaining forest fragments is a priority, but encouraging farmers to maintain tree cover in pastures and along boundaries may also make an important contribution to animal conservation.     

Beyond Species Richness: Community Similarity as a Measure of Cross-Taxon Congruence for Coarse-Filter Conservation

Abstract:  The use of a surrogate taxon in conservation planning has become questionable because recent evidence suggests that the correlation of species richness between pairs of taxa is highly variable both taxonomically and geographically. Species richness is only one measure of species diversity, however, and recent studies suggest that investigations of cross-taxon congruence should consider a broader range of assessment techniques. The cross-taxon congruence of community similarity between sites among taxa has rarely been examined and may be the most relevant measure of species diversity in the context of coarse-filter conservation strategies. We examined cross-taxon congruence patterns of species richness and community similarity (Bray-Curtis similarity) among birds, butterflies, and vascular plants in montane meadow habitats in the Greater Yellowstone Ecosystem. Although patterns of species richness (Spearman rank correlation) varied between taxa, we consistently found a positive correlation in community similarity (Mantel test) between all pair-wise comparisons of the three taxa (e.g., sites with similar bird communities also had similar butterfly communities). We suggest that the success of a surrogate taxon depends on the technique used to assess surrogacy and the specific approach to conservation planning. In the context of coarse-filter conservation, measures of community similarity may be more appropriate than measures of species richness. Furthermore, the cross-taxon congruency of community similarity in our study suggests that coarse-filter conservation may be tenable in montane meadow communities.     

A Multiscale Landscape Approach to Predicting Bird and Moth Rarity Hotspots in a Threatened Pitch Pine–Scrub Oak Community

Abstract:  In the northeastern United States, pitch pine (  Pinus rigida Mill.)–scrub oak ( Quercus ilicifolia Wang.) communities are increasingly threatened by development and fire suppression, and prioritization of these habitats for conservation is of critical importance. As a basis for local conservation planning in a pitch pine–scrub oak community in southeastern Massachusetts, we developed logistic-regression models based on multiscale landscape and patch variables to predict hotspots of rare and declining bird and moth species. We compared predicted moth distributions with observed species-occurrence records to validate the models. We then quantified the amount of overlap between hotspots to assess the utility of rare birds and moths as indicator taxa. Species representation in hotspots and the current level of hotspot protection were also assessed. Predictive models included variables at all measured scales and resulted in average correct classification rates (optimal cut point) of 85.6% and 89.2% for bird and moth models, respectively. The majority of moth occurrence records were within 100 m of predicted habitat. Only 13% of all bird hotspots and 10% of all moth hotspots overlapped, and only a few small patches in and around Myles Standish State Forest were predicted to be hotspots for both taxa. There was no correlation between the bird and moth species-richness maps across all levels of richness ( r =−0.03, p = 0.62). Species representation in hotspots was high, but most hotspots had limited or no protection. Given the lack of correspondence between bird and moth hotspots, our results suggest that use of species-richness indicators for conservation planning may be ineffective at local scales. Based on these results, we suggest that local-level conservation planning in pitch pine–scrub oak communities be based on multitaxa, multiscale approaches.     

Systematic Temporal Patterns in the Relationship Between Housing Development and Forest Bird Biodiversity

As people encroach increasingly on natural areas, one question is how this affects avian biodiversity. The answer to this is partly scale‐dependent. At broad scales, human populations and biodiversity concentrate in the same areas and are positively associated, but at local scales people and biodiversity are negatively associated with biodiversity. We investigated whether there is also a systematic temporal trend in the relationship between bird biodiversity and housing development. We used linear regression to examine associations between forest bird species richness and housing growth in the conterminous United States over 30 years. Our data sources were the North American Breeding Bird Survey and the 2000 decennial U.S. Census. In the 9 largest forested ecoregions, housing density increased continually over time. Across the conterminous United States, the association between bird species richness and housing density was positive for virtually all guilds except ground nesting birds. We found a systematic trajectory of declining bird species richness as housing increased through time. In more recently developed ecoregions, where housing density was still low, the association with bird species richness was neutral or positive. In ecoregions that were developed earlier and where housing density was highest, the association of housing density with bird species richness for most guilds was negative and grew stronger with advancing decades. We propose that in general the relationship between human settlement and biodiversity over time unfolds as a 2‐phase process. The first phase is apparently innocuous; associations are positive due to coincidence of low‐density housing with high biodiversity. The second phase is highly detrimental to biodiversity, and increases in housing density are associated with biodiversity losses. The long‐term effect on biodiversity depends on the final housing density. This general pattern can help unify our understanding of the relationship of human encroachment and biodiversity response. Patrones Sistemáticos Temporales en la Relación entre Desarrollos Urbanos y la Biodiversidad de Aves de Bosque     

Response Time of Wetland Biodiversity to Road Construction on Adjacent Lands

Abstract: Road construction may result in significant loss of biodiversity at both local and regional scales due to restricted movement between populations, increased mortality, habitat fragmentation and edge effects, invasion by exotic species, or increased human access to wildlife habitats, all of which are expected to increase local extinction rates or decrease local recolonization rates. Species loss is unlikely to occur immediately, however. Rather, populations of susceptible species are expected to decline gradually after road construction, with local extinction occurring sometime later. We document lags in wetland biodiversity loss in response to road construction by fitting regression models that express species richness of different taxa ( birds, mammals, plants, and herptiles) as a function of both current and historical road densities on adjacent lands. The proportion of variation in herptile and bird richness explained by road densities increased significantly when past densities were substituted for more current densities in multiple regression models. Moreover, for vascular plants, birds, and herptiles, there were significant negative effects of historical road densities when the most current densities were controlled statistically. Our results provide evidence that the full effects of road construction on wetland biodiversity may be undetectable in some taxa for decades. Such lags in response to changes in anthropogenic stress have important implications for land-use planning and environmental impact assessment.     

Determinants of local extinction and turnover rates in urban bird communities.

Studying the effects of urbanization on the dynamics of communities has become a priority for biodiversity conservation. The consequences of urbanization are mainly an increased fragmentation of the original landscapes associated with a decrease in the amount of favorable habitats and an increased pressure of human activities on the remaining patches suitable for wildlife. Patterns of bird species richness have been studied at different levels of urbanization, but little is known about the temporal dynamics of animal communities in urban landscapes. In particular, urbanization is expected to have stronger negative effects on migratory breeding bird communities than on sedentary ones, which should lead to different patterns of change in composition. Using an estimation method accounting for heterogeneity in species detection probability and data collected between 2001 and 2003 within a suburban area near the city of Paris, France, we tested whether these communities differ in their local extinction and turnover rates. We considered the potential effects of patch size and distance to Paris' center as a measure of the degree of urbanization around the patches. As expected, local rates of extinction and turnover were higher for migratory than for sedentary species, and they were negatively related to patch size for migratory species. Mean species richness of the sedentary species increased during the study period and their local turnover rate was negatively related to the distance to the urban core, showing a trend to colonize the most urban patches. These results highlight the very dynamic nature of the composition of some local bird communities in fragmented habitats and help to identify factors affecting colonization and extinction.     

Conservation Value of Multiple-Use Areas in East Africa

Abstract:  Despite wide agreement that strictly protected areas (World Conservation Union categories I–III) are the best strategy for conserving biodiversity, they are limited in extent and exclude many species of key conservation importance. In contrast, multiple-use management areas (categories IV–VI), comprising >60% of the world's protected-area network, are often considered of little value to biodiversity conservation, particularly in Africa, where they typically contain few charismatic large mammals. We sampled small mammals, amphibians, birds, butterflies, and trees at 41 sites along a four-step gradient of increasing human activity and decreasing conservation protection, from a well-protected Tanzanian national park to nonintensive agricultural land. Although preliminary, our results indicate that species richness of these five taxa did not decline along this gradient, but different management areas, occupying areas of largely similar habitat, hosted distinct communities of each taxon. Differences in species composition in the absence of manifest differences in species richness highlight the importance of developing landscape-scale conservation strategies and the danger of using either a limited suite of indicator taxa or umbrella species as surrogates for biodiversity. Although strictly protected areas perform a unique and vital conservation service in East Africa by protecting large mammals, areas that allow varied resource extraction activities still possess vital and complementary conservation value.     

A Mechanistic Approach to Evaluation of Umbrella Species as Conservation Surrogates

Abstract:  Although species with large area requirements are sometimes used as umbrella species, their general utility as conservation tools is uncertain. We surveyed the species diversity of birds, butterflies, carabids, and forest-floor plants in forest sites across an area (1600 km²) in which we delineated large breeding home ranges of Northern Goshawk ( Accipiter gentilis ). We tested whether protection of the home ranges could serve as an effective umbrella to protect sympatric species of the four taxa. We also used an empirical habitat model of occupancy of home range to examine mechanisms by which the Northern Goshawk acts as an umbrella species. Among species richness, abundance, and species composition of the four taxa, only abundance and species composition of birds differed between sites located inside and outside home ranges, which was due to greater abundance of bird species that were prey of Northern Goshawks inside the home ranges. Thus, although home range indicated areas with high abundance of certain bird prey species, it was not effective as an indicator of the species diversity of all four taxa. We also did not find any difference in species richness, abundance, and species composition between sites predicted as occupied and unoccupied using the habitat model. In contrast, when we selected sites on the basis of each habitat variable in the model, habitat variables that selected sites either in agricultural or forested landscapes encompassed sites with high species richness or particular species composition. This result suggests that the low performance of the Northern Goshawk as an umbrella species is due to this species' preference for habitat in both agricultural and forested landscapes. Species that can adjust to changes in habitat conditions may not act as effective umbrella species despite having large home ranges.     

The importance of agricultural lands for Himalayan birds in winter

The impacts of land‐use change on biodiversity in the Himalayas are poorly known, notwithstanding widespread deforestation and agricultural intensification in this highly biodiverse region. Although intact primary forests harbor many Himalayan birds during breeding, a large number of bird species use agricultural lands during winter. We assessed how Himalayan bird species richness, abundance, and composition during winter are affected by forest loss stemming from agriculture and grazing. Bird surveys along 12 elevational transects within primary forest, low‐intensity agriculture, mixed subsistence agriculture, and intensively grazed pastures in winter revealed that bird species richness and abundance were greatest in low‐intensity and mixed agriculture, intermediate in grazed pastures, and lowest in primary forest at both local and landscape scales; over twice as many species and individuals were recorded in low‐intensity agriculture than in primary forest. Bird communities in primary forests were distinct from those in all other land‐use classes, but only 4 species were unique to primary forests. Low‐, medium‐, and high‐intensity agriculture harbored 32 unique species. Of the species observed in primary forest, 80% had equal or greater abundance in low‐intensity agricultural lands, underscoring the value of these lands in retaining diverse community assemblages at high densities in winter. Among disturbed landscapes, bird species richness and abundance declined as land‐use intensity increased, especially in high‐intensity pastures. Our results suggest that agricultural landscapes are important for most Himalayan bird species in winter. But agricultural intensification—especially increased grazing—will likely result in biodiversity losses. Given that forest reserves alone may inadequately conserve Himalayan birds in winter, comprehensive conservation strategies in the region must go beyond protecting intact primary forests and ensure that low‐intensity agricultural lands are not extensively converted to high‐intensity pastures.     

Overlooked biodiversity loss in tropical smallholder agriculture

Smallholder agriculture is the main driver of deforestation in the western Amazon, where terrestrial biodiversity reaches its global maximum. Understanding the biodiversity value of the resulting mosaics of cultivated and secondary forest is therefore crucial for conservation planning. However, Amazonian communities are organized across multiple forest types that support distinct species assemblages, and little is known about smallholder impacts across the range of forest types that are essential for sustaining biodiversity. We addressed this issue with a large-scale field inventory of birds (point counts) and trees (transects) in primary forest and smallholder agriculture in northern Peru across 3 forest types that are key for Amazonian biodiversity. For birds smallholder agriculture supported species richness comparable to primary forest within each forest type, but biotic homogenization across forest types resulted in substantial losses of biodiversity overall. These overall losses are invisible to studies that focus solely on upland (terra firma) forest. For trees biodiversity losses in upland forests dominated the signal across all habitats combined and homogenization across habitats did not exacerbate biodiversity loss. Proximity to forest strongly predicted the persistence of forest-associated bird and tree species in the smallholder mosaic, and because intact forest is ubiquitous in our study area, our results probably represent a best-case scenario for biodiversity in Amazonian agriculture. Land-use planning inside and outside protected areas should recognize that tropical smallholder agriculture has pervasive biodiversity impacts that are not apparent in typical studies that cover a single forest type. The full range of forest types must be surveyed to accurately assess biodiversity losses, and primary forests must be protected to prevent landscape-scale biodiversity loss.     

Selection of Multiple Umbrella Species for Functional and Taxonomic Diversity to Represent Urban Biodiversity

Surrogates, such as umbrella species, are commonly used to reduce the complexity of quantifying biodiversity for conservation purposes. The presence of umbrella species is often indicative of high taxonomic diversity; however, functional diversity is now recognized as an important metric for biodiversity and thus should be considered when choosing umbrella species. We identified umbrella species associated with high taxonomic and functional biodiversity in urban areas in Switzerland. We analyzed 39,752 individuals of 574 animal species from 96 study plots and 1397 presences of 262 plant species from 58 plots. Thirty‐one biodiversity measures of 7 taxonomic groups (plants, spiders, bees, ground beetles, lady bugs, weevils and birds) were included in within‐ and across‐taxa analyses. Sixteen measures were taxonomical (species richness and species diversity), whereas 15 were functional (species traits including mobility, resource use, and reproduction). We used indicator value analysis to identify umbrella species associated with single or multiple biodiversity measures. Many umbrella species were indicators of high biodiversity within their own taxonomic group (from 33.3% in weevils to 93.8% in birds), to a lesser extent they were indicators across taxa. Principal component analysis revealed that umbrella species for multiple measures of biodiversity represented different aspects of biodiversity, especially with respect to measures of taxonomic and functional diversity. Thus, even umbrella species for multiple measures of biodiversity were complementary in the biodiversity aspects they represented. Thus, the choice of umbrella species based solely on taxonomic diversity is questionable and may not represent biodiversity comprehensively. Our results suggest that, depending on conservation priorities, managers should choose multiple and complementary umbrella species to assess the state of biodiversity. Selección de Múltiples Especies Paraguas para la Diversidad Funcional y Taxonómica para Representar la Biodiversidad Urbana     

Use of Multispecies Occupancy Models to Evaluate the Response of Bird Communities to Forest Degradation Associated with Logging

Forest degradation is arguably the greatest threat to biodiversity, ecosystem services, and rural livelihoods. Therefore, increasing understanding of how organisms respond to degradation is essential for management and conservation planning. We were motivated by the need for rapid and practical analytical tools to assess the influence of management and degradation on biodiversity and system state in areas subject to rapid environmental change. We compared bird community composition and size in managed (ejido, i.e., communally owned lands) and unmanaged (national park) forests in the Sierra Tarahumara region, Mexico, using multispecies occupancy models and data from a 2‐year breeding bird survey. Unmanaged sites had on average higher species occupancy and richness than managed sites. Most species were present in low numbers as indicated by lower values of detection and occupancy associated with logging‐induced degradation. Less than 10% of species had occupancy probabilities >0.5, and degradation had no positive effects on occupancy. The estimated metacommunity size of 125 exceeded previous estimates for the region, and sites with mature trees and uneven‐aged forest stand characteristics contained the highest species richness. Higher estimation uncertainty and decreases in richness and occupancy for all species, including habitat generalists, were associated with degraded young, even‐aged stands. Our findings show that multispecies occupancy methods provide tractable measures of biodiversity and system state and valuable decision support for landholders and managers. These techniques can be used to rapidly address gaps in biodiversity information, threats to biodiversity, and vulnerabilities of species of interest on a landscape level, even in degraded or fast‐changing environments. Moreover, such tools may be particularly relevant in the assessment of species richness and distribution in a wide array of habitats. Uso de Modelos de Ocupación para Múltiples Especies para Evaluar la Respuesta de las Comunidades de Aves a la Degradación de Bosques Asociada con la Tala