Shear layer over floodplain vegetation with a view on bending and streamlining effects

Environmental Fluid Mechanics - Shrubby and woody vegetation growing on floodplains profoundly influences hydrodynamic and transport processes in riverine systems. Existing hydrodynamic research is...     

Biofluorescence as a survey tool for cryptic marine species

As ecosystems come under increasing anthropogenic pressure, rare species face the highest risk of extinction. Paradoxically, data necessary to evaluate the conservation status of rare species are often lacking because of the challenges of detecting species with low abundance. One group of fishes subject to this undersampling bias are those with cryptic body patterns. Twenty‐one percent of cryptic fish species assessed for their extinction risk (International Union for Conservation of Nature [IUCN]) are data deficient. We developed a nondestructive method for surveying cryptically patterned marine fishes based on the presence of biofluorescence (underwater biofluorescence census, UBC). Blue LED torches were used to investigate how widespread biofluorescence was in cryptic reef fishes in the Coral Triangle region. The effectiveness of UBC to generate abundance data was tested on a data‐deficient pygmy seahorse species (Hippocampus bargibanti) and compared with data obtained from standard underwater visual census (UVC) surveys. We recorded 95 reef fish species displaying biofluorescence, 73 of which had not been previously described as biofluorescent. Of those fish with cryptic patterns, 87% were biofluorescent compared with 9% for noncryptic fishes. The probability of species displaying biofluorescence was 70.9 times greater for cryptic species than for noncryptic species. Almost twice the number of H. bargibanti was counted using the UBC compared with UVC. For 2 triplefin species (Ucla xenogrammus, Enneapterygius tutuilae), the abundance detected with UBC was triple that detected with UVC. The UBC method was effective at finding cryptic species that would otherwise be difficult to detect and thus will reduce interobserver variability inherent to UVC surveys. Biofluorescence is ubiquitous in cryptic fishes, making this method applicable across a wide range of species. Data collected using UBC could be used with multiple IUCN criteria to assess the extinction risk of cryptic species. Adopting this technique will enhance researchers’ ability to survey cryptic species and facilitate management and conservation of cryptic marine species.     

Mitigation translocation as a management tool

Mitigation translocation is a subgroup of conservation translocation, categorized by a crisis-responsive time frame and the immediate goal of relocating individuals threatened with death. However, the relative successes of conservation translocations with longer time frames and broader metapopulation- and ecosystem-level considerations have been used to justify the continued implementation of mitigation translocations without adequate post hoc monitoring to confirm their effectiveness as a conservation tool. Mitigation translocations now outnumber other conservation translocations, and understanding the effectiveness of mitigation translocations is critical given limited global conservation funding especially if the mitigation translocations undermine biodiversity conservation by failing to save individuals. We assessed the effectiveness of mitigation translocations by conducting a quantitative review of the global literature. A total of 59 mitigation translocations were reviewed for their adherence to the adaptive scientific approach expected of other conservation translocations and for the testing of management options to continue improving techniques for the future. We found that mitigation translocations have not achieved their potential as an effective applied science. Most translocations focused predominantly on population establishment- and persistence-level questions, as is often seen in translocations more broadly, and less on metapopulation and ecosystem outcomes. Questions regarding the long-term impacts to the recipient ecosystem (12% of articles) and the carrying capacity of translocation sites (24% of articles) were addressed least often, despite these factors being more likely to influence ultimate success. Less than half (47%) of studies included comparison of different management techniques to facilitate practitioners selecting the most effective management actions for the future. To align mitigation translocations with the relative success of other conservation translocations, it is critical that future mitigation translocations conform to an established experimental approach to improve their effectiveness. Effective mitigation translocations will require significantly greater investment of time, expertise, and resources in the future.     

Geochemical caper fingerprints as a tool for geographical origin identification

The identification of geographical origin of food products is important for both consumers and producers to ensure quality and avoid label falsifications. The caper plant (Capparis spinosa L., Brassicales Capparidaceae), a xerophytic shrub common in the Mediterranean area, produces buds and fruits that are commercialized in brine at high price. Those grown in Italy in the Aeolian Islands are renowned for their high quality. This study is aimed to establish a correlation between the geological and geochemical features of soil and the chemical composition of caper buds grown in two Aeolian Islands, Lipari and Salina. Major and trace elements were investigated by X-ray fluorescence and inductively coupled plasma-mass spectrometry in soil and caper samples from three localities in Lipari and Salina, and data from the three sites were compared by a nonparametric test, a correlation test and multivariate statistics (principal component analysis). The results allowed to discriminate soils according to geolithological characteristics of each area and detect a statistically significant correspondence between soil and caper samples for the elements Co, Fe, Mg and Rb, identifying thus possible geochemical caper fingerprints of origin. These results may also be useful to protect the high quality of Aeolian caper products by a suitable “Made in Italy” trademark and avoid falsifications and frauds.     

Soft intervention technology as a tool for integrated coastal zone management

After introducing soft defence techniques as an alternative to hard defence techniques, the need is emphasized to consider the coastal area as an integral system. By recalling the main driving factors for coastal management: conflict resolution, resilience and sustainability, we logically arrive at the concepts of ecological engineering and ecotechnology, which are increasingly acknowledged as possible solutions to achieve sustainable use of coastal space as a resource. In this context, we refer to the principles of self design and of ecosystem conservation. In order to deal with real situations we are in need of fundamental ‘tools’ for the application of the soft intervention technology approach. We therefore introduce the concept of physiographic units and develop an initial elaboration for a coastal stretch and for coastal wetlands. The latter deserve more attention because of the already established practices of ecotechnology, at least as far as water and soil quality are concerned, but certainly also concerning morphology, especially in the future. We conclude by briefly discussing how activities undertaken in two research projects currently being conducted under the framework of the Marine Science and Technology Program of the Commission of the European Communities are expected to contribute to the concepts introduced here.     

Algal plating as a tool for investigating allelopathy among marine microalgae

Chemical interactions among marine microalgae were studied in cultures of pennate diatoms on agar plates. Nine marine and freshwater pennate diatoms were surveyed as potential bioassay organisms; Cylindrotheca fusiformis was most favourable for assays because of its rapid and even growth on agar. Diatom and bacterial bioassays were used to screen cell and filtrate extracts of 14 microalgal cultures. A number of these algal species, which were grown axenically, produced extractable, intracellular and/or extracellular substances that inhibited the growth of C. fusiformis. Our results suggest that the culturing of pennate diatoms on a solid medium can provide a simple bioassay for screening algal extracts which potentially contain growth inhibitors involved in microalgal allelopathy.     

Information indices as a tool for quantifying development of below-ground terrestrial ecosystems

Information indices from ecosystem network analysis (ENA) describe the size and organization of an ecosystem and are claimed to quantify ecosystem development [Ulanowicz, R.E., 1986, Growth and Development, Springler-Verslag, New York, 203 pp.]. To date, these indices were not used to describe a gradient of ecosystem development for a field situation. Here we used information indices to quantify soil succession with soils of different age on the island Schiermonnikoog, The Netherlands. We evaluated whether information indices describe ecosystem development as predicted by ENA.For the Island of Schiermonnikoog the biomasses of soil organisms and roots were measured on four stages of succession (0, 10, 25 and 100 years old soils). Organisms were grouped based on their feeding characteristics. With these data consumption, respiration, excretion, external input and output flows to, from and between groups were calculated. These flows, in turn, were used to calculate the information indices. Relative information indices describe the organization of an ecosystem; i.e. level of organisation (specialization of flows), diversity and evenness of flows, and disorganisation. Absolute indices describe both size (in terms of energy flow) and organisation of the system. System size is used to scale the absolute indices and will be analysed separately as well.We found that the absolute indices increased when succession processed, as predicted by theory. This pattern could have been due to the build-up of biomass, which apparently did not level off. Because the succession gradient deals mostly with young soils (0, 10 and 25 years old) and only one older field (100 years old), the gradient should include more soils of around 100 years old and older to exclude this possibility. Relative indices, on the other hand, increased initially, but then levelled off. We think that this was due to the strong aggregation of functional groups, especially at lower trophic levels, because information in some functional groups showed (expected) trends.Our results suggest that the absolute indices are able to describe ecological succession of terrestrial below-ground ecosystems. The relative indices, in contrast, appeared to be insensitive to subtle succesional changes.     

The CPCAT as a novel tool to overcome the shortcomings of NOEC/LOEC statistics in ecotoxicology: a simulation study to evaluate the statistical power

Species reproduction is an important determinant of population dynamics. As such, this is an important parameter in environmental risk assessment. The closure principle computational approach test (CPCAT) was recently proposed as a method to derive a NOEC/LOEC for reproduction count data such as the number of juvenile Daphnia. The Poisson distribution used by CPCAT can be too restrictive as a model of the data-generating process. In practice, the generalized Poisson distribution could be more appropriate, as it allows for inequality of the population mean \(\mu\) and the population variance \(\sigma ^2\). It is of fundamental interest to explore the statistical power of CPCAT and the probability of determining a regulatory relevant effect correctly. Using a simulation, we varied between Poisson distribution (\(\mu =\sigma ^2\)) and generalized Poisson distribution allowing for over-dispersion (\(\mu <\sigma ^2\)) and under-dispersion (\(\mu >\sigma ^2\)). The results indicated that the probability of detecting the LOEC/NOEC correctly was \(\ge 0.8\) provided the effect was at least 20% above or below the mean level of the control group and mean reproduction of the control was at least 50 individuals while over-dispersion was missing. Specifically, under-dispersion increased, whereas over-dispersion reduced the statistical power of the CPCAT. Using the well-known Hampel identifier, we propose a simple and straight forward method to assess whether the data-generating process of real data could be over- or under-dispersed.     

A bio-inspired computing model as a new tool for modeling ecosystems: The avian scavengers as a case study

The models used for ecosystems modeling are generally based on differential equations. However, in recent years new computational models based on biological processes, or bioinspired models, have arisen, among which are P systems. These are inspired by the functions of cells and present important advantages with respect to traditional models, such as a high computational efficiency, modularity and their ability to work in parallel. They are simple, individual-based models that use biological parameters that can be obtained experimentally. In this work, we present the framework for a model based on P systems applied to the study of an ecosystem in which three avian scavengers (predators) interact with 10 wild and domestic ungulates (preys). The computation time for 100 repetitions, corresponding to 14 simulation years each, with an initial population composed of 385,422 individuals, was 30 min. Our results suggest that the model presented, based on P systems, correctly simulates the population dynamics in the period of time analyzed. We discuss the usefulness of this tool in simulating complex ecosystems dynamics to aid managers, conservationists and policy-makers in making appropriate decisions for the improvement of management and conservation programs.     

The bean method as a tool to measure sensitive behavior

Conservationists need to measure human behavior to guide decisions and evaluate their impact. However, activities can be misreported and reporting accuracy may change following conservation interventions, making it hard to verify any apparent changes. Techniques for asking sensitive questions are increasingly integrated into survey designs to improve data quality, but some can be costly or hard for nonexperts to implement. We demonstrate a straightforward, low-cost approach, the bean method in which respondents give anonymous answers by adding a colored bean to a jar to denote a yes or no response. We applied the bean method to measure wild-meat hunting and trading over 2 years at a conservation-project (hunting reduction) site in Gola Forest, Liberia. We extended the technique to accommodate questions about hunting and meat-selling frequency. We compared responses given using the bean method and direct questioning for groups that did and did not participate in conservation interventions. Results from the bean method corresponded to those from direct questioning, and there was no indication of change in question sensitivity following conservation interventions. Estimates from both methods indicated that wild-meat trading decreased in project and nonproject households (from 36% to 20%) and that hunting decreased in 1 project group (38–28%). Where inconsistent answers were given (2–6% of respondents), differences were in both directions and were most likely attributable to measurement error. The bean method was quick and straightforward to administer in a low-literacy setting. We showed how it can be modified for answers of more than 2 categories and consider it a valuable tool that could be adapted for a wide range of conservation settings.     

Radio-acoustic positioning as a tool for studying site-specific behavior of the white shark and other large marine species

We describe a method, radio-acoustic-positioning (RAP), for continuously monitoring the movements and behavior of large marine animals. An ultrasonic transmitter on the animal can be localized with high spatial accuracy (2 to 10?m) within an area of 1?km², based on when the same pulse arrives at three hydrophones on sonobuoys aligned in a triangular array. Radio transceivers communicate with the base station, where the x and y coordinates of the subject are calculated using hyperbolic equations. The base station plots the individual's position and displays information from the tag's sensors in real time on a computer monitor before saving the data on a disk. The base station must be situated either on land or on a vessel within the reception range of the three buoys. We used a RAP system to monitor the movements and behavior of white sharks (Carcharodon carcharias) near the elephant seal rookery at Año Nuevo Island in central California. This type of system is an ideal tool to study the predatory behavior of the white shark because individuals patrol for seal prey within a zone <1300?m from shore. We describe the operation of the system, including acoustic triangulation, range of detection and positioning, data acquisition and analysis, and positional accuracy. We illustrate the implementation of the method and its advantages and disadvantages by describing an ongoing study of white shark hunting-behavior. Sample data from this study are presented to illustrate specific points. We describe the movements of five sharks within the receiving range and their behavior relative to each other. The RAP system is compared to other complementary tracking methods. We conclude that this system has great potential for monitoring the movements and behavior of large marine animals within a relatively small zone, where feeding or reproduction takes place.     

Beehive fences as a multidimensional conflict‐mitigation tool for farmers coexisting with elephants

Increasing habitat fragmentation and human population growth in Africa has resulted in an escalation in human–elephant conflict between small‐scale farmers and free‐ranging African elephants (Loxodonta Africana). In 2012 Kenya Wildlife Service (KWS) implemented the national 10‐year Conservation and Management Strategy for the Elephant in Kenya, which includes an action aimed at testing whether beehive fences can be used to mitigate human–elephant conflict. From 2012 to 2015, we field‐tested the efficacy of beehive fences to protect 10 0.4‐ha farms next to Tsavo East National Park from elephants. We hung a series of beehives every 10 m around the boundary of each farm plot. The hives were linked with strong wire. After an initial pilot test with 2 farms, the remaining 8 of 10 beehive fences also contained 2‐dimensional dummy hives between real beehives to help reduce the cost of the fence. Each trial plot had a neighboring control plot of the same size within the same farm. Of the 131 beehives deployed 88% were occupied at least once during the 3.5‐year trial. Two hundred and fifty‐three elephants, predominantly 20–45 years old entered the community farming area, typically during the crop‐ ripening season. Eighty percent of the elephants that approached the trial farms were kept out of the areas protected by the beehive fences, and elephants that broke a fence were in smaller than average groups. Beehive fences not only kept large groups of elephants from invading the farmland plots but the farmers also benefited socially and financially from the sale of 228 kg of elephant‐friendly honey. As news of the success of the trial spread, a further 12 farmers requested to join the project, bringing the number of beehive fence protected farms to 22 and beehives to 297. This demonstrates positive adoption of beehive fences as a community mitigation tool. Understanding the response of elephants to the beehive fences, the seasonality of crop raiding and fence breaking, and the willingness of the community to engage with the mitigation method will help contribute to future management strategies for this high human–elephant conflict hotspot and other similar areas in Kenya.     

Group size and relative competitive ability: geometric progressions as a conceptual tool

Contrary to the assumptions of many previous theoretical models, group size has recently been shown in experiments to have an effect on the relative (as well as absolute) competitive abilities of group members. Here we introduce a novel and effective mathematical tool for describing how relative competitive ability will change for any two specified individuals within a group as group size changes. We show that there is no simple general rule for describing how relative competitive ability will change with group size. A subsequent empirical test of the model helps to illustrate that very specific knowledge of the system under study is needed in order to produce robust predictions. Received: 23 December 1998 / Received in revised form: 26 July 1999 / Accepted: 2 October 1999     

Integrated modeling of flood flows and tidal hydrodynamics over a coastal floodplain

The interactions of physical processes between estuaries and upstream river floodplains are of great importance to the fish habitats and ecosystems in coastal regions. Traditionally, a hydraulic analysis of floodplains has used one- or two-dimensional models. While this approach may be sufficient for planning the engineering design for flood protection, it is inadequate when floodwaters inundate the floodplain in a complex manner. Similarly, typical estuarine and coastal modeling studies do not consider the effect of upstream river floodplains because of the technical challenge of modeling wetting and drying processes in floodplains and higher bottom elevations in the upstream river domain. While various multi-scale model frameworks have been proposed for modeling the coastal oceans, estuaries, and rivers with a combination of different models, this paper presents a modeling approach for simulating the hydrodynamics in the estuary and river floodplains, which provides a smooth transition between the two regimes using an unstructured-grid, coastal ocean model. This approach was applied to the Skagit River estuary and its upstream river floodplain of Puget Sound along the northwest coast of North America. The model was calibrated with observed data for water levels and velocities under low-flow and high-flood conditions. This study successfully demonstrated that a three-dimensional estuarine and coastal ocean model with an unstructured-grid framework and wetting-drying capability can be extended much further upstream to simulate the inundation processes and the dynamic interactions between the estuarine and river floodplain regimes.     

Implementation of ecological modeling as an effective management and investigation tool: Lake Kinneret as a case study

The need for scientifically based management of lakes, as key water resources, requires the establishment of quantitative relationships between in-lake processes responsible for water quality (WQ) and the intensity of major management measures (MM, e.g. nutrient loading). In this paper, we estimate the impact of potential changes in nutrient loading on the Lake Kinneret ecosystem. Following validation of the model against a comprehensive dataset, we applied an approach that goes beyond scenario testing by linking the lake ecosystem model DYRESM–CAEDYM with a set of ecosystem variables included in a pre-assessed system of water quality indices. The emergent properties of the ecosystem predicted from the model simulations were also compared with lake data as a form of indirect validation of the model. Model output, in good agreement with lake data, indicated differential effects of nitrogen and phosphorus nutrient loading on concentrations, and major in-lake fluxes, of TN and TP, and dynamics and algal community structure. Both model output and lake data indicated a strong relationship between nitrogen loading and in-lake TN values. This relationship is not apparent for phosphorus and only a weak relationship exists between phosphorus loading and in-lake TP. The modeling results, expressed in terms of water quality, allowed establishment of critical/threshold values for the nutrient loads. Implementation of the ecological modeling supplemented with the quantified set of WQ indices allowed us to take a step towards establishment of the association between permissible ranges for water quality and major management measures, i.e. towards sustainable management.     

Sources and dynamics of large logs in a temperate floodplain river.

Large logs, important agents of biophysical heterogeneity in temperate floodplain rivers, have been virtually eliminated from modified systems. Our purpose was to quantify the sources and dynamics of large logs (> or = 1 m diameter) in the mainstem of a nearly pristine system: the Queets River, Washington, USA. Erosion of forests by the river supplies 0.40 logs x (100 m)(-1) x yr(-1) to the channel. Most (72%) are new logs entering the river for the first time as the river undercuts mature fluvial terraces dominated by large conifers. Retrospective airphoto analyses demonstrate that, over 63 years, the Queets River recruits 95% of new logs from a riparian corridor extending 265 m laterally on both banks, mostly through channel meandering. However, input rates are patchy, with 10% of the valley length supplying 38% of the new logs. As the river moves laterally, remnant logs are left on channel surfaces that later develop riparian forests and reenter the river when those forests erode. Remnant logs lying on the floodplain forest floor surface or buried in alluvium constitute 21% and 7% of the annual inputs from bank erosion, respectively. We estimate that 50% of logs deposited in the channel in a given year, including those underpinning logjams, are transported downriver within five years. Over the next 55 years, bank erosion reclaims an additional 23%, leaving 27% of the logs stable for > 60 years. Simulations indicate that recurrent transport is common, with half of the large conifers being deposited in > or = 3 locations and transported > or = 1.5 km prior to disintegrating. One in ten logs links distant reaches by occupying > or = 7 locations spanning > or = 12.0 km. Instream supplies are therefore a mixture of new and old logs from nearby and upstream forests, sustained by the recapture and transport of stockpiled remnant logs during periods when new inputs are low. We propose that patchy input rates and the periodic rearrangement of large logs are important drivers of temporal variation in river valley habitats, adding to the spatial complexity created by stable logs. These findings underscore the importance of extensive mature forests and connectivity in temperate floodplain rivers.     

Geochemical transformation of soil cover and vegetation in a drained floodplain lake affected by long-term discharge of effluents from rayon industry plants,lower Don River Basin,Southern Russia

Environmental Geochemistry and Health - Lake Atamanskoye is one of the most polluted aquatic environments in the South of Russia. This water body was affected by long-term pollution by effluent...     

Improved prediction for a spatio-temporal model

Environmental and Ecological Statistics - We investigate a framework for improving predictions from models for spatio-temporal data. The framework is based on minimising the mean squared prediction...     

Synthesizing units as modeling tool for photosynthesizing organisms with photoinhibition and nutrient limitation

This paper develops a mechanistic ecological model of photosynthesis based on a synthesizing unit with terms for nutrient limitation and wavelength dependent photoinhibition. The model satisfactorily fits standard P-I data with a clear inhibitory impact of excess radiation. Furthermore, the model satisfactorily discriminates between the inhibitory impact of PAR, UVA and UVB. The inhibitory potential of UVA is less than 1 order of magnitude higher than that of PAR, whereas that of UVB is about 2 orders of magnitude higher than PAR. The model can also satisfactorily describe photosynthesis rates as a function of both PAR and environmental nitrate concentrations. At relatively low nutrient levels, the model produces a curve that ascends quickly to a near saturation level; this is a trend often observed in experimental data and described well by a hyperbolic tangent. The results in this paper suggest that nutrient limitation is an overlooked factor in the experimental design for obtaining P-I data. The SU model in this paper is the simplest possible model of photosynthesis with nutrient limitation and photoinhibition that is consistent with Dynamic Energy Budget theory, in which the model can be embedded to obtain dynamic properties.     

Indicators of sustainability as a tool in agricultural development: partitioning scientific and participatory processes

SUMMARY

Sustainable indicators have become popular tools by which policymakers can assess progress towards a more sustainable agriculture. Varying approaches to defining sustainability lead to disagreement about the value of indicators and yet some form of measurement is required so that society can judge the effects of policy. Environmental and social problems and their causes span national boundaries. An international framework for assessing agricultural activities, their effects and the pressures that drive those activities is therefore required. However, a guiding principle of the UN Agenda for Sustainable Development is that global problems require local action. Thus, indicators must provide information for policymakers as well as guidance for farmers and other practitioners. Many indicator programmes currently proposed do not provide this level of guidance as no evaluation as to what level of activity is sustainable has been agreed. A model is presented, to show how scientific and political or participatory approaches may be combined to meet the multiple objectives of involving people, maintaining scientific integrity and providing guidance for policymakers and practitioners alike.