Development and application of a video-mosaic survey technology to document the status of coral reef communities

The recent decline in the condition of coral reef communities worldwide has fueled the need to develop innovative assessment tools to document coral abundance and distribution rapidly and effectively. While most monitoring programs rely primarily on data collected in situ by trained divers, digital photographs and video are used increasingly to extract ecological indicators, provide a permanent visual record of reef condition, and reduce the time that divers spend underwater. In this study, we describe the development and application of a video-based reef survey methodology based on an algorithm for image registration and the estimation of image motion and camera trajectory. This technology was used to construct two-dimensional, spatially accurate, high-resolution mosaics of the reef benthos at a scale of up to 400 m². The mosaics were analyzed to estimate the size and percent cover of reef organisms and these ecological indicators of reef condition were compared to similar measurements collected by divers to evaluate the potential of the mosaics as monitoring tools. The ecological indicators collected by trained divers compared favorably with those measured directly from the video mosaics. Five out of the eight categories chosen (hard corals, octocorals, Palythoa, algal turf, and sand) showed no significant differences in percent cover based on survey method. Moreover, no significant differences based on survey method were found in the size of coral colonies. Lastly, the capability to extract the same reef location from mosaics collected at different times proved to be an important tool for documenting change in coral abundance as the removal of even small colonies (<10 cm in diameter) was easily documented. The two-dimensional video mosaics constructed in this study can provide repeatable, accurate measurements on the reef-plot scale that can complement measurements on the colony-scale made by divers and surveys conducted at regional scales using remote sensing tools.     

Sampling effort needed to estimate condition and species richness in the Ohio river, USA

The level of sampling effort required to characterize fish assemblage condition in a river for the purposes of bioassessment may be estimated via different approaches. However, the goal with any approach is to determine the minimum level of effort necessary to reach some specific level of confidence in the assessment. In the Ohio River, condition is estimated and reported primarily at the level of pools defined by lock and dam structures. The goal of this study was to determine the minimum level of sampling effort required to adequately characterize pools in the Ohio River for the purpose of bioassessment. We followed two approaches to estimating required sampling effort using fish assemblage data from a long-term intensive survey across a number of Ohio River pools. First, we estimated the number of samples beyond which variation in the multimetric Ohio River Fish Index (ORFIn) leveled off. Then, we determined the number of samples necessary to collect approximately 90% of the fish species observed across all samples collected within the pool. For both approaches, approximately 15 samples were adequate to reduce variation in IBI scores to acceptable levels and to capture 90% of observed species in a pool. The results of this evaluation provide a basis not only for the Ohio River Valley Water Sanitation Commission (ORSANCO) but also states and other basin commissions to develop sampling designs for bioassessment that ensure adequate sampling of all assessment units.     

Indicators of ecosystem health at the species level and the example of selenium effects on fish

Chemical monitoring of aquatic ecosystems describes the chemical exposures of aquatic biota and measures the success of pollution control. However, meeting water quality criteria cannot assure that aquatic biota are protected from the effects of unexpected chemicals, mixtures and interactions between toxicity and environmental stressors.Biological monitoring is an obvious solution since aquatic biota integrate spatial and temporal variations in exposure to many simultaneous stressors. Top predators, typical of specific ecosystems (e.g. lake trout in cold water oligotrophic lakes) indicate whether environmental criteria have been met. The presence of naturally reproducing, self-sustaining and productive stocks of edible fish demonstrates a high quality environment. If these conditions are not met, there is a clear sign of environmental degradation. Specific changes in population structure and performance may also diagnose which life stage is affected and the nature of the stressor.Unfortunately, environmental managers cannot rely solely on populations, communities or ecosystems to indicate chmical effects. The lag between identifying a problem and finding a cause may destroy the resource that we wish to protect, particularly where chemicals are persistent.A solution to this dilemma is the measurement of primary or secondary responses of individual organisms to chemical exposure. Since toxicity at any level of organization must start with a reaction between a chemical and a biological substrate, these responses are the most sensitive and earliest sign of chemical exposure and effect.Application of this idea requires research on molecular mechanisms of chemical toxicity in aquatic biota and adaptation of existing mammalian diagnostic tools. Since relevance of biochemical responses to populations and ecosystems is not obvious, there is a need to study the links between chemical exposure and responses of individuals, populations and ecosystems.The recognition of chemical problems and cause-effect relationships requires the integration of chemical and biological monitoring, using the principles of epidemiology to test the strength of relationships and to identify specific research needs. The contamination of a reservoir with selenium and impacts on fish populations provide an excellent example of this approach.     

Genotoxic effects of water pollution on two fish species living in Karasu River,Erzurum, Turkey

Karasu River, which is the only river in the Erzurum plain, is the source of the Euphrates River (Eastern Anatolia of Turkey). The river is in a serious environmental situation as a result of pollution by agricultural and industrial sewage and domestic discharges. The present study aims to evaluate genotoxic effects of toxic metals in chub, Leuciscus cephalus, and transcaucasian barb, Capoeta capoeta, collected from contaminated site of the Karasu River, in comparison with fish from an unpolluted reference site. Heavy metal concentrations in surface water of the river were determined. The condition factor (CF) was taken as a general biomarker of the health of the fish, and genotoxicity assays such as micronucleus (MN) and other nuclear abnormalities (NA) were carried out on the fish species studied. MN and NA such as kidney-shaped nucleus, notched nucleus, binucleated, lobed nucleus, and blebbed nucleus were assessed in peripheral blood erythrocytes, gill epithelial cells, and liver cells of the fish. A significant decrease in CF values associated with a significant elevation in MN and NA frequencies was observed in fish collected from the polluted sites compared with those from the reference site. Results of the current study show the significance of integrating a set of biomarkers to identify the effects of anthropogenic pollution. High concentrations of heavy metals have a potential genotoxic effects, and the toxicity is possibly related to industrial, agricultural, and domestic activities.     

Changes in the abundance and composition of zooplankton from the ports of Mumbai, India

Zooplankton abundance, biomass, and composition from the ports of Mumbai, India, were studied by selecting 14 stations in and around the area during three different periods between 2001 and 2002 (Nov 01, Apr 02, and Oct 02). The results are compared with the records available since the 1940s. Copepod species such as Canthocalanus sp., Paracalanus arabiensis, Cosmocalanus sp., Euterpina acutifrons, Nannocalanus minor, and Tortanus sp. which were not reported in the earlier studies were observed during the present investigation. Purely herbivorous forms like Nannocalanus minor, Paracalanus sp., and Temora discaudata were in reduced abundance during Apr 02 sampling which was coupled with reduction in the diatom population. Whereas increased abundance of some carnivorous and omnivorous forms during Apr 02 sampling can be related to the changes in the food web dynamics.     

Determination of heavy metals in fresh water fish species of the River Ravi, Pakistan compared to farmed fish varieties

The untreated industrial and sewage wastes arising from industries and metropolitan activities make their passage to the River Ravi, Pakistan, where Balloki Headworks is one of the major sites of effluent concentration. This study was designed to evaluate the concentration of various toxic elements in fishes of that area compared to a nearby fish farm. The concentrations of heavy metals, such as As, Cd, Cu, Pb, Hg, and Zn, and electrolytes Ca, K, and Na were determined in different edible and non-edible fresh water fish varieties. Fish samples were collected from two selected sites and were analyzed for aforementioned elements. Higher levels of As (35.74–45.33 ppm), Cd (0.35–0.45 ppm), Pb (2.1–3.0 ppm), Hg (83.03–92.35 ppm) while normal levels of Zn (37.85–40.74 ppm) and Cu (1.39–2.93 ppm) were observed. Mercury, higher levels of which trigger cough, impairment of pulmonary function, and psychotic reactions, was significantly higher in all studied categories. At the sites under study, there has been observed alarming levels of toxic metals which are needed to be monitored regularly.     

Assessing the ecological effects of human impacts on coral reefs in Bocas del Toro,Panama

Environmental and biological reef monitoring was conducted in Almirante Bay (Bahía Almirante) in Bocas del Toro, Panama, to assess impacts from anthropogenic developments. An integrated monitoring investigated how seasonal temperature stress, turbidity, eutrophication and physical impacts threatened reef health and biodiversity throughout the region. Environmental parameters such as total suspended solids [TSS], carbon isotopes (δ¹³C), C/N ratios, chlorophyll a, irradiance, secchi depth, size fractions of the sediments and isotope composition of dissolved inorganic carbon [DIC] of the water were measured throughout the years 2010 and 2011 and were analysed in order to identify different impact sources. Compared to data from Collin et al. (Smithsonian Contributions to the Marine Sciences 38:324–334, 2009) chlorophyll a has doubled at sites close to the city and the port Almirante (from 0.46–0.49 to 0.78–0.97 μg l^?1) and suspension load increased, visible by a decrease in secchi depth values. Visibility decreased from 9-13 m down to 4 m at the bay inlet Boca del Drago, which is strongly exposed to river run off and dredging for the shipping traffic. Eutrophication and turbidity levels seemed to be the determining factor for the loss of hard coral diversity, most significant at chlorophyll a levels higher than 0.5 μg l^?1 and TSS levels higher than 4.7 mg l^?1. Hard coral cover within the bay has also declined, at some sites down to <10 % with extremely low diversities (7 hard coral species). The hard coral species Porites furcata dominated the reefs in highly impacted areas and showed a strong recovery after bleaching and a higher tolerance to turbidity and eutrophication compared to other hard coral species in the bay. Serious overfishing was detected in the region by a lack of adult and carnivorous fish species, such as grunts, snappers and groupers. Study sites less impacted by anthropogenic activities and/or those with local protection showed a higher hard coral cover and fish abundance; however, an overall loss of hard coral diversity was observed.     

Assessment of the exposure of two fish species to metals pollution in the Ogun river catchments, Ketu, Lagos, Nigeria

The concentrations of metals (Ca, Cd, Fe, Mn, Pb and Zn) were determined by flame atomic absorption spectrophotometry in water, sediments and fish samples in the Ogun river catchments, Ketu, Lagos, which is an important bird nesting, fishing and drinking water source. The results show that the southern tip bothering the Lagos lagoon is where the highest metal concentrations are found in the fish species (Tilapia sp. and Chrysichthys sp.), whereas the Agboyi creek segment near the lagoon with higher surrounding human population density recorded higher levels of metals in sediments and water samples. The two fish species accumulated different amounts of metals. However, the differences were not statistically different at p < 0.05. There is a significant correlation (p < 0.05) for Cd concentration in water. The concentrations of Pb in sampling points 3 and 4 as well as Cd, Mn and Fe in all six sampling points exceeds the World Health Organization (WHO) limits for drinking water. Levels of metals obtained for sediments are within the range reported for Nigeria’s river sediments. Based on this study, the human risks for heavy metals in the harvested fish species from the Ogun river catchments, Ketu, are low for now as the concentrations were below the recommended Food and Agriculture Organization (FAO) maximum limits for Pb (0.5 mg/Kg), Cd (0.5 mg/Kg), and Zn (30 mg/Kg) in fish.     

Seasonal variations in species composition,abundance, biomass and production rate of tintinnids (Ciliata: Protozoa) along the Hooghly (Ganges) River Estuary,India: a multivariate approach

The study is the first documentation of seasonal variations in species composition, abundance and diversity of tintinnid (Ciliata: Protozoa), in relation to water quality parameters along the stretch of the Hooghly (Ganges) River Estuary (HRE), eastern coastal part of India. A total of 26 species (22 agglomerated and 4 non-agglomerated) belonging to 8 genera has been identified from 8 study sites where Tintinnopsis (17 species) represented the most dominant genera, contributing up to 65 % of total tintinnid community followed by Tintinnidium (2 species), Leprotintinnus (2 species) and Dadayiella, Favella, Metacylis, Eutintinnus and Helicostomella (each with solitary species). The maximum (1,666 ind.?l^?1) and minimum (62 ind.?l^?1) abundance of tintinnids was recorded during post-monsoon and monsoon, respectively. A distinct seasonal dynamics in terms of biomass (0.005–2.465 μg C l^?1) and daily production rate (0.04–3.13 μg C l^?1 day^?1) was also noticed, accounting highest value during pre-monsoon. Chlorophyll a and nitrate were found to be potential causative factors for the seasonal variations of tintinnids as revealed by a stepwise multiple regression model. The result of ANOVA showed a significant variation between species abundance and months (F?=?2.36, P?≤?0.05). k-dominance curves were plotted to determine the comparison of tintinnid dominance between the investigated stations. Based on a principal component analysis (PCA), three main groups were delineated with tintinnid ciliates and environmental parameters. The changes in lorica morphology in terms of temperature and salinity, recorded for three dominant species, provided information on the ecological characteristics of the species assemblage in this estuarine system.     

Design to monitor trend in abundance and presence of American beaver (Castor canadensis) at the national forest scale

Wildlife conservationists design monitoring programs to assess population dynamics, project future population states, and evaluate the impacts of management actions on populations. Because agency mandates and conservation laws call for monitoring data to elicit management responses, it is imperative to design programs that match the administrative scale for which management decisions are made. We describe a program to monitor population trends in American beaver (Castor canadensis) on the US Department of Agriculture, Black Hills National Forest (BHNF) in southwestern South Dakota and northeastern Wyoming, USA. Beaver have been designated as a management indicator species on the BHNF because of their association with riparian and aquatic habitats and its status as a keystone species. We designed our program to monitor the density of beaver food caches (abundance) within sampling units with beaver and the proportion of sampling units with beavers present at the scale of a national forest. We designated watersheds as sampling units in a stratified random sampling design that we developed based on habitat modeling results. Habitat modeling indicated that the most suitable beaver habitat was near perennial water, near aspen (Populus tremuloides) and willow (Salix spp.), and in low gradient streams at lower elevations. Results from the initial monitoring period in October 2007 allowed us to assess costs and logistical considerations, validate our habitat model, and conduct power analyses to assess whether our sampling design could detect the level of declines in beaver stated in the monitoring objectives. Beaver food caches were located in 20 of 52 sampled watersheds. Monitoring 20 to 25 watersheds with beaver should provide sufficient power to detect 15–40% declines in the beaver food cache index as well as a twofold decline in the odds of beaver being present in watersheds. Indices of abundance, such as the beaver food cache index, provide a practical measure of population status to conduct long-term monitoring across broad landscapes such as national forests.     

Microphytobenthic biomass,species composition and environmental gradients in the mangrove intertidal region of the Andaman Archipelago,India

Monthly sampling in mangrove intertidal sediments of Andaman Archipelago was carried out during a 1-year study (January to December, 2013) in order to analyse the spatial and temporal distribution of microphytobenthos (MPB) and MPB biomass (sediment chlorophyll-a (chl-a)) in the surficial layer 0–1 cm. The MPB community was mainly composed of diatoms. The MPB biomass concentration in surface sediment (0–1 cm) ranged from 0.7 to 16.98 μg cm^?3. Population density of benthic diatoms varied from 78 to 224 ind cm^?3. This study identified 41 diatom taxa (27 pennate diatoms, 14 centric diatoms) in the sediment, and among all the diatom taxa, we distinguished few true planktonic species—Coscinodiscus centralis, Coscinodiscus marginatus, Leptocylindricus danicus, Planktoniella sol, Thalassiosira decipiens, Thalassionema nitzschioides and Thalassiothrix longissima. Overall, a high percentage of diatoms were pennate (81%) as opposed to centric. Based on benthic diatom abundance, species composition and distribution, MPB assemblages of sampling stations were grouped into two distinct clusters: one with St. 1 and St. 3 and another one with St. 2 and St. 4. Canonical correspondence analysis (CCA) revealed seasonality as the most important factor determining variability in diatom species composition among sampling sites. There was a distinct seasonal pattern in MPB biomass distribution and benthic diatom cell density during monsoon and post-monsoon seasons. Our results suggest that among various physical and chemical variables studied, greater levels of overlying water nutrients and sediment textures significantly correlated and were conducive factors for MPB. This is the first detailed study on the MPB from these mangrove sediments, providing benchmark data for future studies about these remote groups of Andaman and Nicobar Islands.     

Cadmium,zinc and total mercury levels in the tissues of several fish species from La Plata river estuary,Argentina

A survey of the concentrations of heavy metals — cadmium, zinc and total mercury — in the tissues of fifteen fish species from Samborombón Bay, La Plata river estuary, in Argentina, has been carried out. Liver appeared to be the main organ accumulating cadmium and zinc, while both liver and muscle showed a similar ability for accumulating mercury. The bioaccumulation process was verified for the three metals analyzed, even though low concentrations have been determined. The biomagnification process of the metals studied was not verified in this environment. The highest metal concentrations were recorded in Mugil liza, and particulate matter and sediments — which are closely related to its trophic and ecological habits — seemed to be the main source of metals for this species. Both Micropogonias furnieri and Mugil liza were recognized as possible indicator species for future monitoring programmes for heavy metals in Samborombón Bay. Considering the present results, this area of La Plata river estuary is characterized as a non-polluted environment.Scientific Researcher from the National Council for Scientific and Technological Researches (CONICET), of Argentina     

Hazard assessment of metals in invasive fish species of the Yamuna River,India in relation to bioaccumulation factor and exposure concentration for human health implications

Monitoring of heavy metals was conducted in the Yamuna River considering bioaccumulation factor, exposure concentration, and human health implications which showed contamination levels of copper (Cu), lead (Pb), nickel (Ni), and chromium (Cr) and their dispersion patterns along the river. Largest concentration of Pb in river water was 392 μg L^?1; Cu was 392 μg L^?1 at the extreme downstream, Allahabad and Ni was 146 μg L^?1 at midstream, Agra. Largest concentration of Cu was 617 μg kg^?1, Ni 1,621 μg kg^?1 at midstream while Pb was 1,214 μg kg^?1 at Allahabad in surface sediment. The bioconcentration of Cu, Pb, Ni, and Cr was observed where the largest accumulation of Pb was 2.29 μg kg^?1 in Oreochromis niloticus and 1.55 μg kg^?1 in Cyprinus carpio invaded at Allahabad while largest concentration of Ni was 174 μg kg^?1 in O. niloticus and 124 μg kg^?1 in C. carpio in the midstream of the river. The calculated values of hazard index (HI) for Pb was found more than one which indicated human health concern. Carcinogenic risk value for Ni was again high i.e., 17.02?×?10^?4 which was larger than all other metals studied. The results of this study indicated bioconcentration in fish due to their exposures to heavy metals from different routes which had human health risk implications. Thus, regular environmental monitoring of heavy metal contamination in fish is advocated for assessing food safety since health risk may be associated with the consumption of fish contaminated through exposure to a degraded environment.     

Bioaccumulation factors and multivariate analysis of heavy metals of three edible fish species from the Barekese reservoir in Kumasi,Ghana

The Barekese reservoir has seen persistent degradation for decades through anthropogenic activities within its catchment. In spite of this, heavy metal pollution profile of fish species of the reservoir is not well studied. Total concentrations of Hg, Cd, Ni, and Cr were analyzed in muscle tissues of 45 edible fish species comprising (Tilapia zilli, Oreochromis niloticus, and Heterotis niloticus) from the reservoir. The examined fish species showed varying bioaccumulative factors for detected metals. A PCA biplot revealed that Cd showed association with all examined fish species used in the study indicating that Cd in the reservoir is biologically available for uptake by all examined fish species. A dendrogram of cluster analysis also revealed that Cd and Cr are in one cluster indicating their associations and similarities to a common anthropogenic source. The study suggests that anthropogenic activities are possible sources of heavy metal pollution in the Barekese reservoir and, hence, the examined fish species could be used to monitor the levels of Ni, Cr, Hg, and Cd in the reservoir.     

Flame ionization gas chromatographic determination of phthalate esters in water, surface sediments and fish species in the Ogun river catchments, Ketu, Lagos, Nigeria

The detection and quantification of four phthalate esters??dimethyl phthalate (DMP), diethyl phthalate (DEP), dibutyl phthalate (DBP), and diethylhexyl phthalate (DEHP)??in water, sediment, and some fish species were carried out using flame ionization gas chromatography. The samples were collected from the Ogun river catchments, Ketu, Lagos. The DMP was not detected in the water and fish samples but was detected in sediments collected from four of the six sampling sites. The concentration of DEP, DBP, and DEHP in the fish species ranged from 320.0?C810.0, 380.0?C1,080.0, and 40.0?C150.0 ??g/kg in Tilapia sp.; 310.0?C860.0, 400.0?C1,170.0, and 40.0?C110.0 ??g/kg in Chrysichthys sp.; and 320.0?C810.0, 400.0?C3,970.0, and 30.0?C300.0 ??g/kg (DEHP) in Synodontis sp., respectively. The differences in fish phthalate levels are not statistically significant at p?<?0.05, an indication that phthalate esters accumulation is not fish species dependent. The DEP, DBP, and DEHP values recorded are considerably higher than the maximum allowed concentrations for drinking water prescribed by the US Environmental Protection Agency. The phthalate pollution index and biosediment accumulation factor values were also calculated.     

Analysis of trace elements (Cu, Cd, and Zn) in the muscle, gill, and liver tissues of some fish species using anodic stripping voltammetry

Heavy metal (Cu, Cd, Zn) concentration of the muscle, gill, and liver of Otolithes rubber, Pampus argenteus, Parastromateus niger, Scomberomorus commerson, and Onchorynchus mykiss are determined by anodic stripping voltammetry method. The results show that the concentration of Cu, Cd, and Zn varied between 0.44 and not detected, 0.585 and 0.001, and 0.450 and 0.005?μg/g, respectively. It is interesting that in O. mykiss, the mean value of copper concentration was more than other marine organisms of this study, while in P. niger, the mean value of copper was minimum. The results of this study indicate that in the different tissues of fish species (O. rubber, P. argenteus, P. niger, S. commerson, and O. mykiss), the concentrations of Cu, Cd, and Zn were significantly lower than the permissible FAO/WHO levels.     

Study of phytopigments in river bed sediments: effects of the organic matter, nutrients and metal composition

Phytopigment estimation has a considerable interest in the evaluation of freshwater bodies' quality, because it takes into account the synergistic effect of nutrients like phosphorus or nitrogen on algal growth producing eutrophication. Furthermore, their increasing concentration constitutes the first step in the formation of biofilms on the surface sediments, adding a new and very important element to the dynamic nature of the surface sediments. In this study the distribution of phytoplankton--in terms of chlorophyll-a, chlorophyll-b, phaeophytin-a, phaeophytin-b, total carotenoids, total chlorophyll, and total phaeophytin--was evaluated in river bed sediments. Samples collected at sites with low levels of nutrients (P,N) and metal concentrations showed lower phytopigment concentrations than those collected at the sampling sites affected by sources of pollution. Phytoplankton concentrations were directly and highly related to the organic matter concentrations--in particular to the humic fraction--as well as to the total nitrogen (N), total phosphorus (P(T)) and available phosphorus (P(A)) concentrations in sediments. In addition, phytoplankton also correlates positively with Cu, Zn, Fe and Al extracted in oxalate, being Cu the variable that most influences the phytopigment growth. These are essential metals for the metabolism of the phytoplankton, so therefore the increase in metal concentrations can increase algal growth, unless they reach toxic levels.