Effect of diel period and season on seining effort required to detect changes in Lake Erie beach fish assemblages

Using beach seining data from Lake Erie beaches, we examined the effect of diel period and season on two common study objectives considered sensitive to sampling effort: (1) has fish assemblage composition changed between two sampling time periods?, and (2) how many samples are necessary to provide a representative sample of the fish assemblage? Across a range of effect sizes and power levels, sample sizes were estimated for species richness, total fish abundance, round goby (Neogobius melanostomus) abundance and emerald shiner (Notropis atherinoides) abundance. For most sampling periods and effect sizes, several hundred to several thousand seine hauls were estimated to be required for detecting large-scale (e.g. basin-wide) changes in round goby and emerald shiner abundance. Depending on the indicator of interest, night seining (either spring or fall) was interpreted as the most efficient approach. For both seasons, sampling effort beyond 40 to 50 night seine hauls results in few additional species being detected. Both species accumulation curves and estimated sample sizes indicate that less effort is required to detect species richness changes than fish abundance. For most effect sizes and power levels, estimates of the number of seine hauls required to detect changes in fish abundance are unrealistically large for most monitoring programs. More practical monitoring strategies could be achieved by adopting alternative indicators (e.g. guilds), a more liberal significance level (p=0.1), a paired-site sampling design, or including reference sites.     

Description and evaluation of imposex in Strombus canarium Linnaeus, 1758 (Gastropoda, Strombidae): a potential bio-indicator of tributyltin pollution

Strombus canarium Linnaeus, 1758 is an important gastropod species within the study area and was traditionally collected for food by the locals. The objective of the present study is to assess the incidence of imposex and its severity in this species. Adult conchs were sampled during their main reproductive period, from October 2005 to January 2006, at Sungai Pulai estuary, Johor Straits, Malaysia. A total of 32.81% of adult females showed imposex characteristics, with varying degrees of severity though. The relative penis size (RPS) index ranged from 1.74 to 33.29 (mean = 13.40 ± 2.27, n?=?21), while the relative penis length (RPL) index ranged from 6.28 to 55.19 (mean = 25.83 ± 3.33, n?=?21). The use of vas deferens sequence (VDS) index was however cannot be applied as the presence of egg groove obscured any vas deferens development in affected females. Sequence of imposex (male penis) development in female conch, from merely a small stump to an advance male penis homologous was therefore carefully analyzed and described, and an alternative imposex classification scheme was proposed. S. canarium can be a good indicator for monitoring of organotin pollution within the study area. However, more studies are needed in order to further develop and test its validity and application, such as its correlation with levels of pollutant within the tissues and the environment, as well as its application on other Strombus species.     

Determination of Fish Community Composition in the Untempered Regions of a Thermal Effluent Canal – The Efficacy of a Fixed Underwater Videography System

High flows and deep waters associated with thermal dischargecanals invoke safety concerns and preclude the use of conventional fish sampling methodologies. Despite these challenges, it is critical that assessments of thermal effectsfrom power generation do not rely solely on data collected in the plume, but also focus on fish living in the canal, particularly in regions above the zone of tempering influence. We deployed a fixed underwater videography apparatus to monitor the community composition and abundance patterns of fish in the Nanticoke thermal generating discharge canal on the north shore of Lake Erie from February 1, 1999 until July 31, 1999. We also compared the number of species observed using video to angling surveys, visual observations through the air/water interface and two modified netting procedures. Our results indicate that videography permitted the detectionof the most species and the highest number of individuals. Variable visibility was the largest limitation of this approach. The addition of infrared lighting for low light conditions and a series of cameras positioned at several depths would be a cost effective, safe, and efficient method ofassessing community structure and behaviour of fish in thermal discharge canals.     

Estimating the take of migrating adult chum salmon (Oncorhynchus keta) caused by confined underwater rock blasting

This paper describes a methodology for estimating the take of upstream migrating adult chum salmon (Oncorhynchus keta) caused by confined underwater rock blasting. Because these fish are listed under the Endangered Species Act, it is unlawful to take (i.e., harm, capture, collect, injure, kill, etc.) them without a federal permit. In the permit for an underwater blasting project to deepen a 2 km section of the Columbia River navigation channel linking Portland, Oregon, to the Pacific Ocean, regulators defined take as the mortality of adult chum salmon due to underwater blasting. They required monitoring to estimate take to track compliance with the permit. Conventional predictive models of fish mortality from underwater blasting depend on data about the explosive charges; however, such data for this project were not available for proprietary reasons. Therefore, an innovative approach had to be conceived. The dose-exposure-response methodology we developed provided an unobtrusive, science-based methodology for monitoring and near real-time reporting of adult chum salmon take. We applied the methodology for 99 blasting events from November 1, 2009, through February 5, 2010, in the lower Columbia River (rkm 139–141). The mean absolute peak pressure in underwater sound generated by blast events was 151,685 Pa (22 psi) at a range of 42.7 m. The estimated cumulative take for the project was 0.126 adult chum salmon, far below the 10-fish mortality limit regulators set for the project. We propose that this dose-exposure-response methodology be considered wherever underwater blasting has the potential to have an adverse effect on important fish species.     

Heavy metal concentrations in water, sediment, and tissues of two fish species (Triplohysa pappenheimi, Gobio hwanghensis) from the Lanzhou section of the Yellow River, China

In order to assess the condition of heavy metal pollution in the Yellow River, Lanzhou section, China, and to quantify heavy metal (copper, lead, zinc, and cadmium) contents in tissues (liver, kidney, gills, and muscles) of two fish species (Triplophysa pappenheimi and Gobio hwanghensis), levels of these four metals in the water body, sediment, and tissues of the two fish were measured using inductively coupled plasma-atomic emission spectrometry. The metal levels from this study were compared with the threshold values in the guidelines of water, sediment, and food given by the National Environmental Protection Agency of China, the National Oceanic and Atmospheric Administration of America, and the National Standards Management Department of China. We found the mean concentrations of Cu, Pb, Zn, and Cd in THE water body, sediment, and muscles of two fish species were far below the values in guidelines. We also found that the type of metals present and their concentrations varied in different tissues and species. The results suggested that (1) Cu, Pb, Zn, and Cd did not contaminate the aquatic ecosystem severely and did not threaten the safety of human consumption in the Yellow River, Lanzhou section, and (2) organs that are sensitive to accumulating heavy metals may be useful to develop bioindicators for monitoring metal contamination. Considering environmental variables, further study is necessary before deciding which fish species or tissue could be the ideal bioindicators for aquatic pollution.     

Precision,accuracy, and application of diver-towed underwater GPS receivers

Diver-towed global positioning systems (GPS) handhelds have been used for a few years in underwater monitoring studies. We modeled the accuracy of this method using the software KABKURR originally developed by the University of Rostock for fishing and marine engineering. Additionally, three field experiments were conducted to estimate the precision of the method and apply it in the field: (1) an experiment of underwater transects from 5 to 35 m in the Southern Chile fjord region, (2) a transect from 5 to 30 m under extreme climatic conditions in the Antarctic, and (3) an underwater tracking experiment at Lake Ranco, Southern Chile. The coiled cable length in relation to water depth is the main error source besides the signal quality of the GPS under calm weather conditions. The forces used in the model resulted in a displacement of 2.3 m in a depth of 5 m, 3.2 m at a 10-m depth, 4.6 m in a 20-m depth, 5.5 m at a 30-m depth, and 6.8 m in a 40-m depth, when only an additional 0.5 m cable extension was used compared to the water depth. The GPS buoy requires good buoyancy in order to keep its position at the water surface when the diver is trying to minimize any additional cable extension error. The diver has to apply a tensile force for shortening the cable length at the lower cable end. Repeated diving along transect lines from 5 to 35 m resulted only in small deviations independent of water depth indicating the precision of the method for monitoring studies. Routing of given reference points with a Garmin 76CSx handheld placed in an underwater housing resulted in mean deviances less than 6 m at a water depth of 10 m. Thus, we can confirm that diver-towed GPS handhelds give promising results when used for underwater research in shallow water and open a wide field of applicability, but no submeter accuracy is possible due to the different error sources.     

Heavy metal (As,Cd, Hg,Pb, Cu,Zn, Se) concentrations in muscle and bone of four commercial fish caught in the central Adriatic Sea,Italy

Heavy metal (As, Cd, Cu, Pb, Zn, Hg and Se) concentrations in the muscle and bone of four fish species (Mullus barbatus, Merluccius merluccius, Micromesistius poutassou, and Scomber scombrus) from the central Adriatic Sea were measured and the relationships between fish size (length and weight) and metal concentrations in the tissues were investigated. Samples were analyzed by inductively coupled plasma-atomic emission spectrophotometry with automatic dual viewing. In the muscle, results of linear regression analysis showed that, except for mercury, significant relationships between metal concentrations and fish size were negative. Only mercury levels were positively correlated with Atlantic mackerel size (p?<?0.05). No significant variations of heavy metal concentrations were observed in muscles of the examined species, but a significant difference (p?<?0.01) was found for As, Cd, Pb, and Se concentrations in bone. All the investigated metals showed higher values in the muscle than in bone, except for lead and zinc. Regarding cadmium, lead, and mercury maximum levels, set for the edible portion by European legislation, several samples exceeded these values, confirming the heavy metal presence in species caught near the Jabuka Pit.     

基于环境DNA宏条形码的青岚湖自然保护区鱼类组成及分布特征

为探究在不同引物、不同参考数据库下环境DNA技术检测结果的差异,于2021年4月,采用环境DNA宏条形码技术分析了青岚湖鱼类多样性。选取16S rRNA及Cytb 2种引物,NCBI及本地数据库2种数据库,分别进行比对注释。结果表明:在青岚湖29个采样点中,共检测到7目15科43属64种鱼类,其中在16S-NCBI情形下获得4目9科19属20种鱼类,在16S-本地数据库情形下获得6目13科27属38种鱼类,在Cytb-NCBI情形下获得4目6科16属19种鱼类,在Cytb-本地数据库情形下获得2目5科15属20种鱼类。在青岚湖29个采样点中,鱼类更多地分布于湖面宽阔的中间地带(如S31附近),且南部较北部更少,鱼种的分布呈现一定的空间相似性。就研究区域而言,选择16S rRNA引物及本地数据库可以获得更全面的鱼类物种。通过与青岚湖鱼类历史数据比对发现,环境DNA技术在研究区域具有较强的适用性,如能选择适当的引物和本地数据库,可以更全面地反映研究区域的物种组成情况。     

Residual levels, tissue distribution and risk assessment of organochlorine pesticides (OCPs) in edible fishes from Taihu Lake, China

Tissue distribution and bioaccumulation of organochlorine pesticides (OCPs) in edible fishes collected from Taihu Lake, Cyprinus carpio (C. carpio) and Ctenopharyngodon idellus (C. idellus), were studied. OCPs were detected in all samples with hexachlorocyclohexanes (HCHs), aldrins (including aldrin, dieldrin, endrin, endrin aldehyde, and endrin ketone), heptachlors (heptachlor and heptachlor epoxide) and dichlorodiphenyltrichloroethanes (DDTs) being the predominant compounds for both fish species. Gill and gonad were found to be the dominant tissues for OCP bioaccumulation followed by liver, while muscle showed the least affinity of OCPs for both fishes. Tissue distribution indicated the exchange of contaminants between water and gill, as well as the food intake from environment were the dominant pathways for OCP bioaccumulation in gill-breathing fish, and the following tissue distribution was affected by both the physiological properties of target tissues and physicochemical characteristics of pesticides. OCP residues in fish were species-specific (45.63–1575.26 ng/g dry weight (dw) for C. idellus; 8.40–60.23 ng/g dw for C. carpio) mainly due to the growth rate of individuals as well as the metabolic capacity difference among species. HCHs and DDTs observed in fishes from Taihu Lake were comparable and moderate with other reported places in China. Human exposure risk assessment performed with the estimated daily intake values demonstrated the consumption of target fish species in Taihu Lake at present was safe.     

Comparison between electrofishing and snorkeling surveys to describe fish assemblages in Laurentian streams

We evaluated the relative performance of electrofishing and visual surveys (snorkeling) for estimating the abundance of combinations of fish species and size classes in rivers. We also assessed the effect of environmental conditions on potential differences between the results obtained using these two sampling methods. Sampling sites were distributed in the Laurentian region of Québec. Both methods were used while sections were blocked. Three snorkelers swam the river sections upstream while identifying and counting fish of each species and size classes. Three-pass electrofishing was performed in the same sites and abundances were estimated with a maximum likelihood depletion model. Greater abundances of fish were observed by snorkeling than by electrofishing at all sites. Snorkeling species richness was higher or equal to electrofishing richness in, respectively, 60 % and 40 % of sampled sites. Differences in the fish communities observed by both sampling methods were not related to environmental conditions. The results of our work are therefore contrary to that of most published studies that suggested the use of electrofishing over visual surveys. This study highlights that conclusions derived from previous work on sampling gear comparisons may not be generalisable; rather survey methods might benefit from being selected based on fish community composition.     

Automated benthic counting of living and non-living components in Ngedarrak Reef, Palau via subsurface underwater video

We introduce an automated benthic counting system in application for rapid reef assessment that utilizes computer vision on subsurface underwater reef video. Video acquisition was executed by lowering a submersible bullet-type camera from a motor boat while moving across the reef area. A GPS and echo sounder were linked to the video recorder to record bathymetry and location points. Analysis of living and non-living components was implemented through image color and texture feature extraction from the reef video frames and classification via Linear Discriminant Analysis. Compared to common rapid reef assessment protocols, our system can perform fine scale data acquisition and processing in one day. Reef video was acquired in Ngedarrak Reef, Koror, Republic of Palau. Overall success performance ranges from 60% to 77% for depths of 1 to 3 m. The development of an automated rapid reef classification system is most promising for reef studies that need fast and frequent data acquisition of percent cover of living and nonliving components.     

Assessment of heavy metals in water samples and tissues of edible fish species from Awassa and Koka Rift Valley Lakes, Ethiopia

The Ethiopian Rift Valley Lakes host populations of edible fish species including Oreochromis niloticus, Labeobarbus intermedius and Clarias gariepinus, which are harvested also in other tropical countries. We investigated the occurrence of six heavy metals in tissues of these fish species as well as in the waters of Lake Koka and Lake Awassa. Both lakes are affected by industrial effluents in their catchments, making them ideal study sites. Mercury concentrations were very low in the water samples, but concentrations in the fish samples were relatively high, suggesting a particularly high bioaccumulation tendency as compared with the other investigated metals. Mercury was preferentially accumulated in the fish liver or muscle. It was the only metal with species-specific accumulation with highest levels found in the predatory species L. intermedius. Lower mercury concentrations in O. niloticus could be attributed to the lower trophic level, whereas mercury values in the predatory C. gariepinus were unexpectedly low. This probably relates to the high growth rate of this species resulting in biodilution of mercury. Accumulation of lead, selenium, chromium, arsenic and cadmium did not differ between species, indicating that these elements are not biomagnified in the food chain. Values of cadmium, selenium and arsenic were highest in fish livers, while lead and chromium levels were highest in the gills, which could be related to the uptake pathway. A significant impact of the industrial discharges on the occurrence of metals in the lakes could not be detected, and the respective concentrations in fish do not pose a public health hazard.     

Monitoring fish distributions along electrofishing segments

Electrofishing is widely used to monitor fish species composition and relative abundance in streams and lakes. According to standard protocols, multiple segments are selected in a body of water to monitor population relative abundance as the ratio of total catch to total sampling effort. The standard protocol provides an assessment of fish distribution at a macrohabitat scale among segments, but not within segments. An ancillary protocol was developed for assessing fish distribution at a finer scale within electrofishing segments. The ancillary protocol was used to estimate spacing, dispersion, and association of two species along shore segments in two local reservoirs. The added information provided by the ancillary protocol may be useful for assessing fish distribution relative to fish of the same species, to fish of different species, and to environmental or habitat characteristics.     

Humus characteristics and seasonal changes of soil arthropod communities in a natural sessile oak (Quercus petraea L.) stand and adjacent Austrian pine (Pinus nigra Arnold) plantation

In order to assess the effects of conversion of natural stands into plantations, soil invertebrate micro- and macroarthropod communities were evaluated for their abundance and richness in a sessile oak (SO; Quercus petraea L.) stand and adjacent Austrian pine (AP; Pinus nigra Arnold) plantation. Sites were sampled four times a year in 3-month intervals from May 2009 to February 2010. Humus characteristics such as total mass; carbon, lignin, and cellulose contents; and C/N ratio were significantly different between SO and AP. Statistically significant differences were detected on soil pH, carbon and nitrogen contents, and electrical conductivity between the two sites. The number of microarthropods was higher in AP than in the SO site. The annual mean abundance values of microarthropods in a square meter were 67,763 in AP and 50,542 in SO, and the annual mean abundance values of macroarthropods were 921 m^?2 in AP and 427 m^?2 in SO. Among the soil microarthropods, Acari and Collembola were the dominant groups. Shannon’s diversity index was more affected by evenness than species number despite the species diversity (H′) of soil arthropods being generally higher in the SO stand. The abundance of microarthropods showed clear seasonal trends depending upon the humidity of the soil.     

Investigation of the Influence of Seagrass on Fisheries Catch Level Using Isotonic Regression

The relationship between seagrass area and the commercial catch of some economically important South Australian fish species is not known in any quantitative sense. However, there is evidence in the literature to suggest that seagrass decline will detrimentally impact on species abundance and composition, and consequently that the presence or absence of seagrass will compromise the commercial and recreational fishery. In this paper we describe the construction of models based on order restricted (isotonic) regression and discuss the role of seagrass area, in terms of its influence on the level of commercial catch through modifying the effect of fishing 'effort'.     

Seasonal variations in species composition,abundance, biomass and production rate of tintinnids (Ciliata: Protozoa) along the Hooghly (Ganges) River Estuary,India: a multivariate approach

The study is the first documentation of seasonal variations in species composition, abundance and diversity of tintinnid (Ciliata: Protozoa), in relation to water quality parameters along the stretch of the Hooghly (Ganges) River Estuary (HRE), eastern coastal part of India. A total of 26 species (22 agglomerated and 4 non-agglomerated) belonging to 8 genera has been identified from 8 study sites where Tintinnopsis (17 species) represented the most dominant genera, contributing up to 65 % of total tintinnid community followed by Tintinnidium (2 species), Leprotintinnus (2 species) and Dadayiella, Favella, Metacylis, Eutintinnus and Helicostomella (each with solitary species). The maximum (1,666 ind.?l^?1) and minimum (62 ind.?l^?1) abundance of tintinnids was recorded during post-monsoon and monsoon, respectively. A distinct seasonal dynamics in terms of biomass (0.005–2.465 μg C l^?1) and daily production rate (0.04–3.13 μg C l^?1 day^?1) was also noticed, accounting highest value during pre-monsoon. Chlorophyll a and nitrate were found to be potential causative factors for the seasonal variations of tintinnids as revealed by a stepwise multiple regression model. The result of ANOVA showed a significant variation between species abundance and months (F?=?2.36, P?≤?0.05). k-dominance curves were plotted to determine the comparison of tintinnid dominance between the investigated stations. Based on a principal component analysis (PCA), three main groups were delineated with tintinnid ciliates and environmental parameters. The changes in lorica morphology in terms of temperature and salinity, recorded for three dominant species, provided information on the ecological characteristics of the species assemblage in this estuarine system.     

Assessing the ecological effects of human impacts on coral reefs in Bocas del Toro,Panama

Environmental and biological reef monitoring was conducted in Almirante Bay (Bahía Almirante) in Bocas del Toro, Panama, to assess impacts from anthropogenic developments. An integrated monitoring investigated how seasonal temperature stress, turbidity, eutrophication and physical impacts threatened reef health and biodiversity throughout the region. Environmental parameters such as total suspended solids [TSS], carbon isotopes (δ¹³C), C/N ratios, chlorophyll a, irradiance, secchi depth, size fractions of the sediments and isotope composition of dissolved inorganic carbon [DIC] of the water were measured throughout the years 2010 and 2011 and were analysed in order to identify different impact sources. Compared to data from Collin et al. (Smithsonian Contributions to the Marine Sciences 38:324–334, 2009) chlorophyll a has doubled at sites close to the city and the port Almirante (from 0.46–0.49 to 0.78–0.97 μg l^?1) and suspension load increased, visible by a decrease in secchi depth values. Visibility decreased from 9-13 m down to 4 m at the bay inlet Boca del Drago, which is strongly exposed to river run off and dredging for the shipping traffic. Eutrophication and turbidity levels seemed to be the determining factor for the loss of hard coral diversity, most significant at chlorophyll a levels higher than 0.5 μg l^?1 and TSS levels higher than 4.7 mg l^?1. Hard coral cover within the bay has also declined, at some sites down to <10 % with extremely low diversities (7 hard coral species). The hard coral species Porites furcata dominated the reefs in highly impacted areas and showed a strong recovery after bleaching and a higher tolerance to turbidity and eutrophication compared to other hard coral species in the bay. Serious overfishing was detected in the region by a lack of adult and carnivorous fish species, such as grunts, snappers and groupers. Study sites less impacted by anthropogenic activities and/or those with local protection showed a higher hard coral cover and fish abundance; however, an overall loss of hard coral diversity was observed.     

Vegetation, Soil, and Animal Indicators of Rangeland Health

We studied indicators of rangeland health on benchmark sites with long, well documented records of protection from stress by domestic livestock or histories of environmental stress and vegetation change. We measured ecosystem properties (metrics) that were clearly linked to ecosystem processes. We focused on conservation of soil and water as key processes in healthy ecosystems, and on maintenance of biodiversity and productivity as important functions of healthy ecosystems. Measurements from which indicators of rangeland health were derived included: sizes of unvegetated patches, cover and species composition of perennial grasses, cover and species composition of shrubs and herbaceous perennials, soil slaking, and abundance and species composition of the bird fauna. Indicators that provided an interpretable range of values over the gradient from irreversibly degraded sites to healthy sites included: bare patch index, cover of long-lived grasses, palatability index, and weighted soil surface stability index. Indicators for which values above a threshold may serve as an indicator of rangeland health include: cover of plant species toxic to livestock, cover of exotic species, and cover of increaser species. Several other indicator metrics were judged not sensitive nor interpretable. Examples of application of rangeland health indicators to evaluate the success of various restoration efforts supported the contention that a suite of indicators are required to assess rangeland health. Bird species diversity and ant species diversity were not related to the status of the sample site and were judged inadequate as indicators of maintenance of biodiversity.     

Phytoplankton variation and its relationship with the environmental factors in Nansi Lake, China

Nansi Lake is an important storage lake in the east route of the South-to-North Water Diversion Project in China, about which there has been serious concern regarding the water quality. In this study, the phytoplankton taxonomic composition, abundance, temporal variations, spatial distribution, and diversity were studied based on a monthly sampling campaign from five sampling stations between January 2010 and December 2010. A total of 159 species (8 phyla, 79 genera), including 74 species of Chlorophyta, 36 species of Bacillariophyta, 19 species of Cyanophyta (including 2 water bloom causative species), 21 species of Euglenophyta, 3 species of Cryptophyta, 5 species of Xanthophyta, 2 species of Pyrrophyta, and 2 species of Chrysophyta, were identified. Average phytoplankton diversity index and evenness values were 4.33 and 0.81, respectively, revealing high biodiversity of phytoplankton community. The phytoplankton abundance averaged at 9.51?×?10⁶ cells L^?1 and was much higher than previous investigations carried out in 1983–1984. The dominant species were Bacillariophyta, Chlorophyta in winter and spring, and Chlorophyta and Cyanophyta in summer and atutumn. There were 14 predominant species including Chlorella vulgaris, Cyclotella stelligera, Pseudanabaena limnetica, and Chroomonas acuta. Phytoplankton community structure and environmental variable changed substantially over the survey period. Redundancy Analysis was used to analyze the relationship between them. Temperature was considered to be the key factor driving the change in phytoplankton community composition in Nansi Lake during the 2010 study period.