Hepatic insufficiency in spawning Pacific salmon

The variability of some morpho-ecological factors was studied in 6 pelagic copepods from the North Aegean Sea. From the different findings it is concluded that temperature has a significant influence on body length; the higher the temperature of the environment during development, the shorter the body at maturity. The ratio of males to females is high in species which prefer warmer, and very low in species which prefer colder, waters. The percentage of copepodids in the entire population increases in winter and decreases considerably in summer.     

Reconstruction of Pacific salmon abundance from riparian tree-ring growth.

We use relationships between modern Pacific salmon (Oncorhynchus spp.) escapement (migrating adults counted at weirs or dams) and riparian tree-ring growth to reconstruct the abundance of stream-spawning salmon over 150-350 years. After examining nine sites, we produced reconstructions for five mid-order rivers and four salmon species over a large geographic range in the Pacific Northwest: chinook (O. tschwatcha) in the Umpqua River, Oregon, USA; sockeye (O. nerka) in Drinkwater Creek, British Columbia, Canada; pink (O. gorbuscha) in Sashin Creek, southeastern Alaska, USA; chum (O. keta) in Disappearance Creek, southeastern Alaska, USA; and pink and chum in the Kadashan River, southeastern Alaska, USA. We first derived stand-level, non-climatic growth chronologies from riparian trees using standard dendroecology methods and differencing. When the chronologies were compared to 18-55 years of adult salmon escapement we detected positive, significant correlations at five of the nine sites. Regression models relating escapement to tree-ring growth at the five sites were applied to the differenced chronologies to reconstruct salmon abundance. Each reconstruction contains unique patterns characteristic of the site and salmon species. Reconstructions were validated by comparison to local histories (e.g., construction of dams and salmon canneries) and regional fisheries data such as salmon landings and aerial surveys and the Pacific Decadal Oscillation climate index. The reconstructions capture lower-frequency cycles better than extremes and are most useful for determination and comparison of relative abundance, cycles, and the effects of interventions. Reconstructions show lower population cycle maxima in both Umpqua River chinook and Sashin Creek pink salmon in recent decades. The Drinkwater Creek reconstruction suggests that sockeye abundance since the mid-1990s has been 15-25% higher than at any time since 1850, while no long-term deviations from natural cycles are detected for salmon in the Kadashan River or in Disappearance Creek. Decadal-scale cycles in salmon abundance with periods of 25-68 years were detected in all of the reconstructions. This novel approach provides river-specific, long-term perspectives on salmon abundance and cycles. Additionally, it provides a new frame of reference for maintaining and rebuilding individual stocks and for striking a balance between societal demands and the limited, always-changing salmon resource.     

Incorporating catastrophic risk assessments into setting conservation goals for threatened Pacific salmon

Catastrophic die-offs can have important consequences for vertebrate population growth and biodiversity, but catastrophic risks are not commonly incorporated into endangered-species recovery planning. Natural (e.g., landslides, floods) and anthropogenic (e.g., toxic leaks and spills) catastrophes pose a challenge for evolutionarily significant units (ESUs) of Pacific salmon listed under the Endangered Species Act and teetering at precariously low population levels. To spread risks among Puget Sound chinook salmon populations, recovery strategies for ESU-wide viability recommend at least two viable populations of historical life-history types in each of five geographic regions. We explored the likelihood of Puget Sound chinook salmon ESU persistence by examining spatial patterns of catastrophic risk and testing ESU viability recommendations for 22 populations of the threatened Puget Sound chinook salmon ESU. We combined geospatial information about catastrophic risks and chinook salmon distribution in Puget Sound watersheds to categorize relative catastrophic risks for each population. We then analyzed similarities in risk scores among regions and compared risk distributions among strategies: (1) population groups selected using the ESU viability recommendations of having populations spread out geographically and including historical life-history diversity, and (2) population groups selected at random. Risks from individual catastrophes varied among populations, but overall risk from catastrophes was similar within geographic regions. Recovery strategies that called for two viable populations in each of five geographic regions had lower risk than random strategies; strategies that included life-history diversity had even lower risks. Geographically distributed populations have varying catastrophic-risks profiles, thus identifying and reinforcing the spatial and life-history diversity critical for populations to respond to environmental change or needed to rescue severely depleted or extirpated populations. Recovery planning can promote viability of Pacific salmon ESUs across the landscape by incorporating catastrophic risk assessments.     

Mechanistic basis of individual mortality in Pacific salmon during spawning migrations

Reproductive-based migration is a challenging period for many animals, but particularly for Pacific salmonids, which must navigate from the high seas to freshwater natal streams. For the first time, we attempt to answer the question as to why some migratory adult Pacific salmon die en route to spawning grounds. Summer-run sockeye salmon (Oncorhynchus nerka) were used as a model, and the migration behavior of 301 fish was followed by intercepting them in the ocean about 215 km from the mouth of the Fraser River, British Columbia, Canada, and implanting a gastric radio transmitter. Before release, telemetered fish were also bio-sampled, which included drawing a blood sample, collecting a gill biopsy, and quantifying energetic status with a microwave energy meter. We tested the predictions that the fish that died prematurely would be characterized by low energy reserves, advanced reproductive development, elevated indicators of stress, and low osmoregulatory preparedness compared with fish that completed their river migration. Just over half (52.3%) of the sockeye tagged were subsequently detected in the Fraser River. Salmon that failed to enter the river had exhibited indicators of stress (e.g., elevated plasma lactate, glucose, and cortisol). Contrary to our prediction, fish that failed to enter the river tended to have higher gross somatic energy and be larger at the time of sampling in the ocean than fish that successfully entered the river. Of the fish that were detected in the river (i.e., 134 fish excluding fishery removals), 9.7% did not migrate beyond the lower reaches (approximately 250 km from ocean), and a further 14.2% reached the upper reaches but failed to reach natal sub-watersheds, whereas the remainder (76.1%) reached natal sub-watersheds. Of these, fish unsuccessful in the lower reaches tended to have a high plasma osmolality in the ocean, whereas fish failing in the upper reaches had lower levels of reproductive hormones in the ocean.     

Life-history correlates of extinction risk and recovery potential

Extinction risk is inversely associated with maximum per capita population growth rate (r(max)). However, this parameter is not known for most threatened species, underscoring the value in identifying correlates of r(max) that, in the absence of demographic data, would indirectly allow one to identify species and populations at elevated risk of extinction and their associated recovery potential. We undertook a comparative life-history analysis of 199 species from three taxonomic classes: Chondrichthyes (e.g., sharks; n = 82), Actinopterygii (teleost or bony fishes; n = 47), and Mammalia (n = 70, including 16 marine species). Median r(max) was highest for (and similar between) terrestrial mammals (0.71) and teleosts (0.43), significantly lower among chondrichthyans (0.26), and lower still in marine mammals (0.07). Age at maturity was the primary (and negative) correlate of r(max). In contrast, although body size was negatively correlated with r(max) in chondrichthyans and mammals, evidence of an association in teleosts was equivocal, and fecundity was not related to r(max) in fishes, despite recurring assertions to the contrary. Our analyses suggest that age at maturity can serve as a universal predictor of extinction risk in fishes and mammals when r(max) itself is unknown. Moreover, in contrast to what is generally expected, the recovery potential of teleost fishes does not differ from that of terrestrial mammals. Our findings are supportive of the application of extinction-risk criteria that are based on generation time and that are independent of taxonomic affinity.     

Simulating the potential for ecological restoration of dryland forests in Mexico under different disturbance regimes

Examining the potential for ecological restoration is important in areas where anthropogenic disturbance has degraded forest landscapes. However, the conditions under which restoration of degraded tropical dry forests (TDF) might be achieved in practice have not been determined in detail. In this study, we used LANDIS-II, a spatially explicit model of forest dynamics, to assess the potential for passive restoration of TDF through natural regeneration. The model was applied to two Mexican landscapes under six different disturbance regimes, focusing on the impact of fire and cattle grazing on forest cover, structure and composition. Model results identified two main findings. First, tropical dry forests are more resilient to anthropogenic disturbance than expected. Results suggested that under both a scenario of small, infrequent fires and a scenario of large, frequent fires, forest area can increase relatively rapidly. However, forest structure and composition differed markedly between these scenarios. After 400 years, the landscape becomes increasingly occupied by relatively shade-tolerant species under small, infrequent fires, but only species with both relatively high shade tolerance and high fire tolerance can thrive under conditions with large, frequent fires. Second, we demonstrated that different forms of disturbance can interact in unexpected ways. Our projections revealed that when grazing acts in combination with fire, forest cover, structure and composition vary dramatically depending on the frequency and extent of the fires. Results indicated that grazing and fire have a synergistic effect causing a reduction in forest cover greater than the sum of their individual effects. This suggests that passive landscape-scale restoration of TDF is achievable in both Mexican study areas only if grazing is reduced, and fires are carefully managed to reduce their frequency and intensity.     

Population interconnectivity and implications for recovery of a species of concern, the Pacific hake of Georgia Basin

To aid the recovery of a species, understanding the extent to which populations are connected is useful for targeting conservation efforts. Pacific hake within waters of Puget Sound, Washington State, USA, and Georgia Strait, British Columbia, Canada are listed as a species of concern under the U.S. Endangered Species Act due to dramatic declines in the Puget Sound population. To assess the role of dispersal in the recovery of Pacific hake, we sought to quantify patterns of connectivity between populations in Puget Sound and Georgia Strait. Using natural chemical markers from otoliths of fish sampled from these two populations, we linked natal signatures of fish to signatures of individuals from known spawning grounds. Results indicated that 82 % of individuals collected from Puget Sound (n = 78) were estimated to have originated there, while 40 and 92 % of the individuals collected from two cohorts within Georgia Strait (n = 9 and 24, respectively) had originated from Puget Sound. A trend of “population abandonment” of fish from Puget Sound suggests that recovery of this Pacific hake population will depend on local management practices.     

半干旱黄土区自然恢复与人工造林恢复植被群落对比研究

为研究半干旱黄土区高效植被恢复途径,选取陕西省吴起县境内的合沟封禁流域和柴沟人工造林流域为研究区,在两流域内,沿顺坡和横坡方向,选择一系列20 m×20 m的样地,各组成2条样带。在每个样地内的对角线交点和对角线四分之一处选取5个样方进行植被调查,草本样方和乔灌样方的尺寸分别为1 m×1 m和5 m×5 m。共获得草本样方185个、乔灌木样方80个,其中,合沟封禁流域105个,均为草本样方,柴沟人工造林流域草本样方与乔灌样方各80个。运用植物生态学和植物群落学方法,调查各样方内的植物种类、株数、株高、盖度、地上生物量以及树木基茎、树高、冠幅等植被群落特征指标,并在此基础上对两流域的植被群落特征进行对比分析。结果表明：（1）两流域的植被种类共61种,其中柴沟人工造林流域46种,合沟封禁流域51种,共存物种36种;（2）经过10年生态恢复,柴沟人工造林流域已形成乔-灌-草群落,合沟封禁流域仍为草本群落,且两流域草本群落均以铁杆蒿（Artemisia sacrorum Ledeb.）和茭蒿（Artemisiagiraldii Pamp.）为主要建群种;（3）柴沟人工造林流域的植被盖度、平均高、生物量均明显高于合沟封禁流域的相应指标。两流域植物群落Simpson指数和Shannon-Weiner指数差异较小,Sorensen指数为0.742,主要草本植物种的指标差异不显著。以上特征反映出,在半干旱黄土区,适宜的人工造林可加速该区植被恢复的进程。     

Biochemical responses during starvation and subsequent recovery in postlarval Pacific white shrimp,Penaeus vannamei

Postlarval shrimp, Penaeus vannamei Boone, 1931, were held individually in cages and exposed to two feeding regimes. One group was starved for 12 d and then fed during the following 12 d. A second group was fed throughout the 24 d study. Four individuals were sampled from each of the two groups on Days 0, 1, 2, 4, 8, 12, 13, 14, 16, 20, and 24. Molting and growth among the starved-fed postlarvae stopped after 2 d starvation, while fed postlarvae increased significantly in size throughout the 24 d study. Among the starved-fed postlarvae, water content increased rapidly in response to starvation. DNA and sterol concentrations increased significantly during starvation due to selective catabolism of cellular components. After 12 d, RNA concentration was not significantly different between the fed and starved-fed postlarvae, but became significantly higher in the starved-fed postlarvae 48 h after feeding resumed. Triacylglycerol reserves were severely depleted during the first day of starvation, while protein concentrations began to decrease after the second day of starvation. RNA, protein, and the polyamines spermidine and spermine, when expressed as a ratio to DNA, decreased in response to starvation. Concentrations of all measured parameters in the starved-fed postlarvae returned to levels similar to those in the fed group 8 to 12 d after feeding resumed. Results of this study suggest that triacylglycerol provides energy during short periods of starvation, while protein is utilized during prolonged starvation. The ratios of RNA:DNA, protein:DNA, spermidine:DNA, spermine:DNA, two unidentified amine compounds, and percent water content are all useful indicators of prolonged nutritional stress in postlarval P. vannamei.     

Evaluating the sources of potential migrant species: implications under climate change

As changes in climate become more apparent, ecologists face the challenge of predicting species responses to the new conditions. Most forecasts are based on climate envelopes (CE), correlative approaches that project future distributions on the basis of the current climate often assuming some dispersal lag. One major caveat with this approach is that it ignores the complexity of factors other than climate that contribute to a species' distributional range. To overcome this limitation and to complement predictions based on CE modeling we carried out a transplant experiment of resident and potential-migrant species. Tree seedlings of 18 species were planted side by side from 2001 to 2004 at several locations in the Southern Appalachians and in the North Carolina Piedmont (U.S.A.). Growing seedlings under a large array of environmental conditions, including those forecasted for the next decades, allowed us to model seedling survival as a function of variables characteristic of each site, and from here we were able to make predictions on future seedling recruitment. In general, almost all species showed decreased survival in plots and years with lower soil moisture, including both residents and potential migrants, and in both locations, the Southern Appalachians and the Piedmont. The detrimental effects that anticipated arid conditions could have on seedling recruitment contradict some of the projections made by CE modeling, where many of the species tested are expected to increase in abundance or to expand their ranges. These results point out the importance of evaluating the potential sources of migrant species when modeling vegetation response to climate change, and considering that species adapted to the new climate and the local conditions may not be available in the surrounding regions.     

Evaluating the effects of foraging habitat restoration on shorebird reproduction: the importance of performance criteria and comparative design

Coastal development and engineering projects preclude ecosystem processes that provide habitat for beach nesting birds. Management for coastal species may depend on actions that attempt to restore important habitat features and mitigate disturbance effects. However, species response to restoration or other management actions may be difficult to predict or measure. At Jones Beach State Park, on Long Island, New York, a 0.49 ha restoration project provided moist substrate foraging habitat for breeding Piping Plovers (Charadrius melodus) from 2002 to 2005. We examined whether foraging habitat restoration affected Piping Plover breeding population size, productivity, and fledgling production within 300 m of the restoration site. We found a positive relationship between habitat restoration and the number of fledglings produced per year. However, foraging habitat restoration did not significantly increase the number of Plover pairs breeding at Jones Beach. Our ability to evaluate restoration effects on Plovers depended on: 1) use of multiple performance criteria; 2) a design that allowed comparison of pre- and post-restoration data; and 3) a spatial control that allowed comparison of similar areas that were near and far from the restoration site. Despite the small size of the restoration project, there were measurable benefits to Plovers, indicating that foraging habitat restoration may be an effective tool for species recovery.     

Prioritizing Pacific Salmon Stocks for Conservation

Over 300 native stocks of Pacific salmon, steelhead, and coastal cutthroat trout (Oncorhynchus spp.) are at risk of extinction in the Pacific Northwest. With only limited resources available for conservation and recovery, prioritization of these stocks may become necessary if meaningful measures are to be implemented. We propose criteria by which prioritization may be guided. First, we rank stocks for risk of extinction, either by population viability analysis or by a set of surrogate measures. Then we rank stocks for biological consequences of extinction, using sets of questions designed to establish the genetic and evolutionary consequences and the ecological consequences if a stock were to become extinct. Together, these rankings allow stocks to be prioritized for a range of possible actions, with those stocks at highest risk and bearing the greatest biological consequences of extinction receiving attention first. Application of the prioritization process to 20 Pacific anadromous salmonid stocks worked as intended, although data limitations are considerable. The process is most likely to work successfully when applied to many stocks on which data exist, when several experts carry out the prioritization, and when the results are peer reviewed.     

Mathematical problem definition for ecological restoration planning

Ecological restoration is an increasingly important tool for managing and improving highly degraded or altered environments. Faced with a large number of sites or ecosystems to restore, and a diverse array of restoration approaches, investments in ecological restoration must be prioritized. Nevertheless, there are relatively few examples of the systematic prioritization of restoration actions. The development of a general theory for ecological restoration that is sufficiently sophisticated and robust to account for the inherent complexity of restoration planning, and yet is flexible and adaptable to ensure applicability to a diverse array of restoration problems is needed. In this paper we draw on principles from systematic conservation planning to explicitly formulate the ‘restoration prioritization problem’. We develop a generalized theory for static and dynamic restoration planning problems, and illustrate how the basic problem formulation can be expanded to allow for many factors characteristic of restoration problems, including spatial dependencies, the possibility of restoration failure, and the choice of multiple restoration techniques. We illustrate the applicability of our generic problem definition by applying it to a case study - restoration prioritization on The Irvine Ranch Natural Landmark in Southern California. Through this case study we illustrate how the definition of the general restoration problem can be extended to account for the specific constraints and considerations of an on-the-ground restoration problem.     

Habitat-mediated foraging limitations drive survival bottlenecks for juvenile salmon

Realistic population models and effective conservation strategies require a thorough understanding of mechanisms driving stage-specific mortality. Mortality bottlenecks for many species occur in the juvenile stage and are thought to result from limitation on food or foraging habitat during a "critical period" for growth and survival. Without a way to account for maternal effects or to measure integrated consumption rates in the field, it has been virtually impossible to test these relationships directly. Hence uncertainties about mechanisms underlying such bottlenecks remain. In this study we randomize maternal effects across sites and apply a new method for measuring consumption integrated over weeks to months to test the hypothesis that food limitation drives early-season juvenile mortality bottlenecks in Atlantic salmon (Salmo salar). Using natural signatures of geologically derived cesium (133Cs), we estimated consumption rates of >400 fry stocked into six streams. Two to four weeks after stocking, consumption was extremely low across sites (0.005 g x g(-1) x d(-1)) and was predicted to be below maintenance rations (i.e., yielding negative energy balances) for the majority of individuals from five of six sites. However, consumption during this time was positively correlated with growth rates and survival (measured at the end of the growing season). In contrast, consumption rates increased in mid- (0.030 g x g(-1) x d(-1)) and late (0.035 g x g(-1) x d(-1)) seasons, but juvenile survival and consumption were not correlated, and correlations between growth and consumption were weak. These findings are consistent with predictions of a habitat-based bioenergetic model constructed using the actual stream positions of the individual fish in the present study, which indicates that habitat-based models capture important environmental determinants of juvenile growth and survival. Hence, by combining approaches, reducing maternal effects and controlling initial conditions, we offer a general framework for linking foraging with juvenile survival and present the first direct consumption-based evidence for the early season bottleneck hypothesis.     

Evaluating the coastal environment for marine birds

The marine environment is being increasingly exploited by fisheries and the oil and gas industry. Conservationists urgently need the ability to identify the processes that determine patterns of abundance of marine species. We describe a preliminary Geographic Information System (GIS) in which spatial data on environmental variables (seabird colony locations, sea depth and seabed sediments) are integrated with realistic energy constraints faced by marine birds during the breeding season. A simple foraging model predicts the spatial variation in the quality of given locations as potential feeding sites under different feeding conditions and stages of the breeding cycle. We show how the approach can be used to help managers identify key marine areas and assess the impacts of environmental change or damage.     

Range-Wide Selection of Catchments for Pacific Salmon Conservation

Abstract:  Freshwater ecosystems are declining in quality globally, but a lack of data inhibits identification of areas valuable for conservation across national borders. We developed a biological measure of conservation value for six species of Pacific salmon ( Oncorhynchus spp.) in catchments of the northern Pacific across Canada, China, Japan, Russia, and the United States. We based the measure on abundance and life-history richness and a model-based method that filled data gaps. Catchments with high conservation value ranged from California to northern Russia and included catchments in regions that are strongly affected by human development (e.g., Puget Sound). Catchments with high conservation value were less affected by agriculture and dams than other catchments, although only 1% were within biodiversity reserves. Our set of high-value areas was largely insensitive to simulated error, although classification remained uncertain for 3% of catchments. Although salmon face many threats, we propose they will be most likely to exhibit resilience into the future if a complementary mosaic of conservation strategies can be proactively adopted in catchments with healthy salmon populations. Our analysis provides an initial map of where these catchments are likely to be located.     

Pacific harbor seals (<Emphasis Type="Italic">Phoca vitulina</Emphasis>) and salmon: genetics presents hard numbers for elucidating predator-prey dynamics

We used a PCR-based species test and microsatellite genotyping to determine salmonid species composition and quantity of Chinook among Pacific harbor seal (Phoca vitulina) prey. Tests were applied to DNA extracted from all salmonid bones recovered from scat (fecal) samples. Condition of bone samples and quantity of DNA varied substantially. Although DNA extraction and species identification was only successful for just over half of the bone samples, 93% of all scat samples had bones that were identified to species. Most often only a single salmonid prey species was evident within a scat sample (39% exclusively coho and 46% exclusively Chinook) but 13% contained bones from more than one species of salmonid. For scat samples that contained Chinook bones, 68% had skeletal remains from the same fish and 32% had bones from more than one individual Chinook, varying in number from two to four individuals per scat. In one case, bones from one individual Chinook were recovered in three different scat samples.