Environmental Surveillance for Noroviruses in Selected South African Wastewaters 2015–2016: Emergence of the Novel GII.17

Norovirus (NoV) GII.4 is the predominant genotype associated with gastroenteritis pandemics and new strains emerge every 2–3 years. Between 2008 and 2011, environmental studies in South Africa (SA) reported NoVs in 63% of the sewage-polluted river water samples. The aim of this study was to assess whether wastewater samples could be used for routine surveillance of NoVs, including GII.4 variants. From April 2015 to March 2016, raw sewage and effluent water samples were collected monthly from five wastewater treatment plants in SA. A total of 108 samples were screened for NoV GI and GII using real-time RT-qPCR. Overall 72.2% (78/108) of samples tested positive for NoVs with 4.6% (5/108) GI, 31.5% (34/108) GII and 36.1% (39/108) GI + GII strains being detected. Norovirus concentrations ranged from 1.02 × 10² to 3.41 × 10⁶ genome copies/litre for GI and 5.00 × 10³ to 1.31 × 10⁶ genome copies/litre for GII. Sixteen NoV genotypes (GI.2, GI.3, GI.4, GI.5, GI.6, GII.2, GII.3, GII.4, GII.7, GII.9, GII.10, GII.14, GII.16, GII.17, GII.20, and GII.21) were identified. Norovirus GII.2 and GII.17 co-dominated and the majority of GII.17 strains clustered with the novel Kawasaki 2014 variant. Sewage surveillance facilitated detection of Kawasaki 2014 in SA, which to date has not been detected with surveillance in children with gastroenteritis <5 years of age. Combined surveillance in the clinical setting and environment appears to be a valuable strategy to monitor emergence of NoV strains in countries that lack NoV outbreak surveillance.     

Rotavirus Surveillance in Tap Water,Recycled Water,and Sewage Sludge in Thailand: A Longitudinal Study, 2007–2018

The objective of this study was to describe the epidemiological and molecular surveillance of rotaviruses in tap water, recycled water, and sewage sludge in Thailand from 2007 to 2018. Three hundred and seventy tap water, 202 recycled water, and 72 sewage sludge samples were collected and processed to detect the rotavirus VP7 gene using RT-nested PCR. Rotavirus G genotypes were identified by DNA sequencing and phylogenetic analysis. The frequency of rotavirus detection was 0.54% of the tap water samples, 30.2% of the recycled water samples, and 50.0% of the sewage sludge samples. During the 12-year surveillance, G1 was prevalent most years and constantly predominant in recycled water and sewage sludge. G2 was identified in a tap water sample and in recycled water samples. G3 and G9 were observed in both recycled water and sewage sludge samples. The uncommon G6 rotavirus strain was identified in one recycled water sample. The rotavirus VP4 gene was detected in rotavirus strains with an identified G genotype using RT-multiplex nested PCR. The unusual P[6] genotype was the most frequently detected, followed by mixed P[6]/[4] and P[4] genotypes. Phylogenetic analysis of both G and P genotypes showed a close genetic relationship with sequences of human rotavirus strains. The high nucleotide identity of the rotavirus strains found in this study to human rotavirus strains suggests that the rotaviruses are derived from human source. These results represent useful epidemiological and molecular information for evaluating rotavirus distribution in water for consumption and irrigation, and in biosolids for agricultural application.

     

Environmental disasters,migration and displacement. Insights and developments from L’Aquila's case

This paper analyses the environmentally-induced migration and displacement resulting from L’Aquila's earthquake of 2009. After a general critical overview of the social science literature on this topic, the main changes in the migration system are analysed looking at the roots and trajectories of the forced human displacement that followed the earthquake, and reflecting on the challenges related to post-earthquake demographic movements and post-disaster resettlement. Through the analysis of the pre disaster (2002–2008) and recovery period (2009–2013) data, this paper offers a general model of how environmental disaster might affect migration and displacement and suggests the main challenges related to the post-disaster governance. Relying on ISTAT data on internal migration in Italy this paper argues that the post-seismic recovery period is characterized by a strong increase of out-flows from L’Aquila to other provinces, within the Abruzzo region and outside it, in particular toward the closest regions (Latium, Campania).     

Environmental status and management in Chiba Prefecture

Chiba Prefecture is located in the east of Tokyo Metropolis. A large scale development of industrial and residential areas began in the late 1950s until then the main industries of the prefecture were agriculture and fisheries. During the past 30 years rapid industrialization and urbanization took place resulting in occurrence of various environmental problems.In an attempt to establish a better environment condition towards 21st century Chiba Prefecture has made Environmental Plan which all the municipal governments, enterprises and inhabitants should observe to realize better environment.     

Estimation of Contamination Sources of Human Enteroviruses in a Wastewater Treatment and Reclamation System by PCR–DGGE

A polymerase chain reaction–denaturing gradient gel electrophoresis (PCR–DGGE) method was employed to estimate the contamination sources of human enteroviruses and understand how their dominant strains vary in a wastewater treatment and reclamation system consisting of sewage collection, wastewater treatment with membrane bioreactor and open lakes for reclaimed water storage and reuse. After PCR–DGGE using a selected primer set targeting enteroviruses, phylogenetic analysis of acquired enterovirus gene sequences was performed. Enteroviruses identified from the septic tank were much more diverse than those from grey water and kitchen wastewater. Several unique types of enterovirus different from those in wastewater samples were dominant in a biological wastewater treatment unit. Membrane filtration followed by chlorination was proved effective for physically eliminating enteroviruses; however, secondary contamination likely occurred as the reclaimed water was stored in artificial lakes. Enterovirus 71 (EV71), a hand-foot-and-mouth disease (HFMD) viral pathogen, was detected mainly from the artificial lakes, implying that wastewater effluent was not the contamination source of EV71 and that there were unidentified non-point sources of the contamination with the HFMD viral pathogen in the reclaimed water stored in the artificial lakes. The PCR–DGGE targeting enteroviruses provided robust evidence about viral contamination sources in the wastewater treatment and reclamation system.     

Environmental, land-use and economic implications of Brazilian sugarcane expansion 1996–2006

Governments are promoting biofuels and the resulting changes in land use and crop reallocation to biofuels production have raised concerns about impacts on environment and food security. The promotion of biofuels has also been questioned based on suggested marginal contribution to greenhouse gas emissions reduction, partly due to induced land use change causing greenhouse gas emissions. This study reports how the expansion of sugarcane in Brazil during 1996–2006 affected indicators for environment, land use and economy. The results indicate that sugarcane expansion did not in general contribute to direct deforestation in the traditional agricultural region where most of the expansion took place. The amount of forests on farmland in this area is below the minimum stated in law and the situation did not change over the studied period. Sugarcane expansion resulted in a significant reduction of pastures and cattle heads and higher economic growth than in neighboring areas. It could not be established to what extent the discontinuation of cattle production induced expansion of pastures in other areas, possibly leading to indirect deforestation. However, the results indicate that a possible migration of the cattle production reached further than the neighboring of expansion regions. Occurring at much smaller rates, expansion of sugarcane in regions such as the Amazon and the Northeast region was related to direct deforestation and competition with food crops, and appear not to have induced economic growth. These regions are not expected to experience substantial increases of sugarcane in the near future, but mitigating measures are warranted.     

Comprehensive Study on Enteric Viruses and Indicators in Surface Water in Kyoto,Japan, During 2014–2015 Season

Certain enteric viruses that are present in the water environment are potential risk factors of waterborne infections. To better understand the impact of viruses in water, both enteric viruses and their potential indicators should be comparatively investigated. In this study, occurrences of GI- and GII-noroviruses (NoVs), sapovirus (SaV), rotavirus (RoV), Aichi virus 1 (AiV-1), enterovirus (EV), and pepper mild mottle virus (PMMoV) were quantitatively determined in surface water samples in Japan. Additionally, the genotype distribution of GI- and GII-NoVs was determined using a next-generation amplicon sequencing. PMMoV was the most abundant virus regardless of season and location, indicating its usefulness as an indicator for the viral contamination of water. Other potential indicators, AiV and EV, were less abundant than GII-NoV. Viruses other than PMMoV showed seasonality, i.e., EV and other viruses (NoVs, SaV, RoV, and AiV-1) became prevalent during summer and winter, respectively. SaV showed a relatively high abundance at a location that was affected by untreated wastewater. Regarding NoV genotypes, GI.1, GI.2, GI.4, GI.5, GI.6, GII.3, GII.4, GII.6, and GII.17 were found from the surface water samples. GII.4 and GII.17 seemed to have contributed to the high abundance of GII-NoV in the samples. Interestingly, GII.17 strains became prevalent in the water samples before becoming prevalent among gastroenteritis patients in Japan. These findings provide further insights into the properties of viruses as contaminants in the water environment.     

Somatic Coliphage Profiles of Produce and Environmental Samples from Farms in Northern México

Somatic coliphages were quantified in 459 produce and environmental samples from 11 farms in Northern Mexico to compare amounts of somatic coliphages among different types of fresh produce and environmental samples across the production steps on farms. Rinsates from cantaloupe melons, jalapeño peppers, tomatoes, and the hands of workers, soil, and water were collected during 2011–2012 at four successive steps on each farm, from the field before harvest through the packing facility, and assayed by FastPhage MPN Quanti-tray method. Cantaloupe farm samples contained more coliphages than jalapeño or tomato (p range <0.01–0.03). Across production steps, jalapeños had higher coliphage percentages before harvest than during packing (p = 0.03), while tomatoes had higher coliphage concentrations at packing than all preceding production steps (p range <0.01–0.02). These findings support the use of targeted produce-specific interventions at multiple points in the process of growing and packing produce to reduce the risk of enteric virus contamination and improve food safety during fruit and vegetable production.     

Prevalence of Norovirus Infection in Children and Adults with Acute Gastroenteritis,Tehran, Iran, 2008–2009

Noroviruses are one of important agents that cause acute viral gastroenteritis worldwide. These viruses are belonging to Caliciviridae family and are genetically diverse. To date, there is no valuable data about prevalence of norovirus infection and the dominant genogroup/genotype among Iranian population. The objective of this study was to determine the frequency of norovirus infection in Iranian patients with gastroenteritis referred to three hospitals of Tehran and to specify the dominant genogroup/genotype of this virus among our study population. A total of 293 patients with acute gastroenteritis were included in the study. Detection of norovirus was performed using RT-PCR method and confirmed by direct sequencing with specific designed primers for capsid region of norovirus genome. Phylogenetic analysis was performed using the neighbor-joining method. Norovirus strains identified in our study were subsequently categorized according to previously defined genogroup/genotypes. Of these, norovirus GII was dominant genogroup. Sixty-five percent (17 of 26) of positive samples were determined as GII and 35% (9 of 26) were determined as GI, respectively, in 2008–2009. And among 8 sequenced strains of genogroup II the most frequent genotype was GII.3. The results of this study indicated that norovirus must be considered as one of the infectious causes of acute gastroenteritis among Iranian population. We also found that GII.3 is more prevalent in our study population. To the best of our knowledge there is limited data about the role of noroviruses in children and adults’ acute gastroenteritis among Iranian patients and this prevalence and genotyping report of norovirus infection could be remarkable for further studies.     

Occurrence of Norovirus GIV in Environmental Water Samples from Belém City,Amazon Region,Brazil

Noroviruses are the major cause of non-bacterial acute gastroenteritis outbreaks in humans, with few reports about the occurrence of the norovirus GIV strain. We investigated the presence of norovirus GIV in surface water (river, bay, and stream) and untreated sewage, and we determined a positivity rate of 9.4 % (9/96). The strains genotyped were GIV.1. To our knowledge, this is the first report of GIV in Brazil.     

Environmental circumstances surrounding bushfire fatalities in Australia 1901–2011

This paper describes the development and analysis of a dataset covering bushfire related life loss in Australia over the past 110 years (1901–2011). Over this time period 260 bushfires have been associated with a total of 825 known civilian and firefighter fatalities. This database was developed to provide an evidence base from which an Australian national fire danger rating system can be developed and has benefits in formalising our understanding of community exposure to bushfire. The database includes detail of the spatial, temporal and localised context in which the fatalities occurred. This paper presents the analysis of 674 civilian fatalities. The analysis has focused on characterising the relationship between fatal exposure location, weather conditions (wind speed, temperature, relative humidity and drought indices), proximity to fuel, activities and decision making leading up to the death.The analysis demonstrates that civilian fatalities were dominated by several iconic bushfires that have occurred under very severe weather conditions. The fatalities from Australia's 10 worst bushfire days accounted for 64% of all civilian fatalities. Over 50% of all fatalities occurred on days where the McArthur Forest Fire Danger Index (FFDI) exceeded 100 (the current threshold for declaring a day as ‘catastrophic’) proximal to the fatality.The dominant location category was open air representing 58% of all fatalities followed by 28% in structures, and 8% in vehicles (6% are unknown). For bushfires occurring under weather conditions exceeding an FFDI value of 100, fatalities within structures represented over 60% of all fatalities. These were associated with people dying while attempting to shelter mainly in their place of residence. Of the fatalities that occurred inside a structure in a location that was specifically known, 41% occurred in rooms with reduced visibility to the outside conditions. Over 78% of all fatalities occurred within 30 m of the forest.     

Hepatitis A Outbreaks and Environmental Circulation of Genotype IA Strains in the São Paulo City, 2017–2018

Food and Environmental Virology - Hepatitis A virus (HAV) is the major cause of enterically transmitted infectious hepatitis. Between 2016 and 2017, the number of confirmed cases of hepatitis A...     

Active Surveillance and Genetic Characterization of Prevalent Velogenic Newcastle Disease and Highly Pathogenic Avian Influenza H5N8 Viruses Among Migratory Wild Birds in Southern Egypt During 2015–2018

Food and Environmental Virology - A total of 1007 samples (910 fecal droplets and 97 cloacal swabs) were collected from 14 species of migratory wild birds in most wetlands during 3 successive...     

Are ecosystem service hotspots located in protected areas? Results from a study in Southern Italy

Ecosystems are essential in providing multiple services to society. However, understanding ecosystem services (ESS) in terms of spatial distribution and trade-offs still remains a challenge for landscape planners and natural resource managers. In this paper, we analyzed the supply of a set of ESS – carbon storage, soil erosion protection, biodiversity, and recreation – within the landscape surrounding the city of Bari in Southern Italy. Through an analysis of this landscape, which includes natural protected areas, such as Natura 2000 Network sites, national and regional parks and nature reserves, and in view of the recent Fitness Check of the Nature Directives, we aimed to provide answers to the following questions: (i) Where are the areas of high and low supply of individual ecosystem services located?; (ii) Where do ecosystem service trade-offs (i.e., ‘hotspots’ and ‘coldspots’) occur?; and (iii) To what extent are ecosystem service hotspots and coldspots located within or outside of natural protected areas? Results show that most of the landscape in the study area supplied at least one of the selected ESS and that ESS hotspots were mostly located within forested and/or natural areas. Hotspots occupied 8.0% of the total landscape, with 23.7% located in natural protected areas. Coldspots were scarce and equal to 2.4%; they constituted only 0.1% of natural protected areas. Almost all of the landscape (89.6%) consists of intermediate areas (i.e., between hotspots and coldspots); 76.2% of natural protected areas consists of intermediate areas. This latter finding is relevant because the high intermediate classes are potentially high-performing areas, which lie mainly on the borders of protected spaces; they can positively influence ecological processes and thus enhance a wide-ranging provision of ESS. Our results highlight the importance of analyzing landscapes to facilitate the selection of priority areas where management efforts would yield maximum benefits.     

Yearly variation in characteristics and health risk of polycyclic aromatic hydrocarbons and nitro-PAHs in urban shanghai from 2010–2018

This study encompassed the regular observation of nine polycyclic aromatic hydrocarbons (PAHs) and three nitro-PAHs (NPAHs) in particulate matter (PM) in Shanghai in summer and winter from 2010 to 2018. The results showed that the mean concentrations of ?PAHs in summer decreased by 24.7% in 2013 and 18.1% in 2017 but increased by 10.2% in 2015 compared to the data in 2010. However, the mean concentrations of ?PAHs in winter decreased by 39.7% from 2010 (12.8 ± 4.55 ng/m³) to 2018 (7.72 ± 3.33 ng/m³), and the mean concentrations of 1-nitropyrene in winter decreased by 79.0% from 2010 (42.3 ± 16.1 pg/m³) to 2018 (8.90 ± 2.09 pg/m³). Correlation analysis with meteorological conditions revealed that the PAH and NPAH concentrations were both influenced by ambient temperature. The diagnostic ratios of PAHs and factor analysis showed that they were mainly affected by traffic emissions with some coal and/or biomass combustion. The ratio of 2-nitrofluoranthene to 2-nitropyrene was near 10, which indicated that the OH radical-initiated reaction was the main pathway leading to their secondary formation. Moreover, backward trajectories revealed different air mass routes in each sampling period, indicating a high possibility of source effects from the northern area in winter in addition to local and surrounding influences. Meanwhile, the mean total benzo[a]pyrene-equivalent concentrations in Shanghai in winter decreased by 50.8% from 2010 (1860 ± 645 pg/m³) to 2018 (916 ± 363 pg/m³). These results indicated the positive effects of the various policies and regulations issued by Chinese authorities.     

Briefing of Symposium on Environmental Protection and Ecology in Developing Countries

The symposium on Environmental Protection and Ecology in Developing Countries, orga-nized and financed by Chinese Academy of Sciences (CAS) and Federation of Asian Scientific Academics and Societies (FASTS) and supported by American Association for the Advance-ment of Science (AAAS) and the UNEP Regional representative has held on November 2-4 in Beijing, China.     

Symposium on Environmental Protection and Ecology in Developing Countries-Call for Action

The participants in the Symposium on Environmental Protection and Ecology in Develo-ping Countries, cosponsored by the Chinese Academy of Sciences (CAS) and the Federation of Asian Scientific Academies & Societies (FASAS), held in Beijing, China, on 1-4 November 1989.     

Environmental impact of radionuclide migration in groundwater from a low-intermediate level radioactive waste repository

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