Biodegradation of coplanar polychlorinated biphenyls by anaerobic microorganisms from estuarine sediments.

In this study, we investigated the biodegradability of biphenyl and 5 congeners (one non-planar and four coplanar) of polychlorinated biphenyl (PCB). Biphenyl, the non-planar congener 2,3',4',5-tetrachlorobiphenyl (25-34 CB), and the four coplanar congeners 3,3',4,4'-tetrachlorobiphenyl (34-34 CB), 3,4,4',5-tetrachlorobiphenyl (345-4 CB), 3,3',4,4',5-pentachlorobiphenyl (345-34 CB), and 3,3',4,4',5,5'-hexachlorobiphenyl (345-345 CB) were amended at a concentration of 10 mg/L into anoxic sediment slurries collected from the estuaries of the Tansui River and the Erjen River. During 2 years' incubation under sulfidogenic conditions, biphenyl was persistent, while all other chlorinated congeners, except for 345-345 CB, were dechlorinated with or without a lag period in sediment slurries collected from both rivers. Dechlorination of coplanar and non-planar congeners began with para chlorine removal. All para chlorines from the mono-, di-, and trichlorobiphenyl groups could be removed by sediment slurries from both rivers. Microbial communities in sediment from the Erjen River additionally fostered meta-dechlorination activity, but only after removal of all the para chlorines. Addition of Tween 20 (0.05%, v/v) into sediment slurries from the Tansui River did not enhance dechlorination rates or extents, but the addition of toluene- or 3-chlorobenzoate-adapted sediments enhanced dechlorination of 34-34 CB and 345-4 CB.     

Anaerobic biodegradation of DDT residues (DDT, DDD, and DDE) in estuarine sediment.

The potential for anaerobic biodegradation of 1,1,1-trichloro-2,2-bischlorophenylethane (DDT), 1,1-dichloro-2,2,-bischlorophenylethane (DDD), and dichlorodiphenylchloroethylene (DDE) in anoxic sediment slurries collected from the Keelung River was investigated in this study. o,p'- and p,p'-DDT were dechlorinated to o,p'- and p,p'-DDD, respectively, and then transformed to other compound(s). 1-Chloro-2,2-bis (p-chlorophenyl) ethylene (DDMU) and trace amount of dichlorobenzophenone (DBP) were detected in sediment slurries amended with p,p'-DDT or p,p'-DDD. DDMU was also detected in sediment slurries amended with p,p'-DDE. The relative transformation rates for both o,p'- and p,p'-isomers of DDT, DDD, and DDE were DDT>DDD>DDE. Re-addition of DDT, DDD, or DDE to the sediment slurries after initial removal enhanced the respective dechlorination rates. The transformation rates of the p,p'-isomers of both DDT and DDD were faster than those of the respective o,p'-isomers. p,p'-DDT dechlorination in the p,p'-DDT-adapted sediment slurries were inhibited by the addition of molybdate, or molybdate plus sulfate, but not inhibited by the addition of sulfate. Addition of bromoethane-sulfonic acid (BESA) slightly inhibited p,p'-DDT dechlorination. Non-adapted sediment slurries lost the ability to dechlorinate pentachlorophenol during adaptation to p,p'-DDT. p,p'-DDD was the major transformation product of p, p'-DDT in 3,4,4',5-tetrachlorobiphenyl-adapted sediment slurries, which suggested that the microbial community in the 3,4,4',5-CB-adapted sediment was unable to remove chlorine from the aromatic rings of p,p'-DDT.     

A+OSA污泥减量工艺的微生态特性

采用16S rDNA序列与PCR-DGGE(polymerase chain reaction-denaturing gradient gel electrophoresis)分析技术相结合的方法,研究了A+OSA(the anoxic+oxic-settling-anaerobic)污泥减量工艺在不同工况下的减量效果及其微生态特性。结果显示,在自然条件下,A+OSA工艺可有效减少剩余污泥27%左右。分子生物研究表明,解耦联池的插入可以明显改变系统微生物的群落结构,且随着解耦联池水力停留时间的延长,系统中部分微生物被"淘洗",微生物丰富度和多样性指数均有所降低。相似性分析表明,参照系统和A+OSA工艺分属于2个不同的集群,但在A+OSA工艺内部各反应池样品间具有较高的相似性,且各反应池在HRT为5.16 h和7.14 h时,表现为显著相似。通过上述研究可为该工艺优化及调控提供理论指导。     

Ecological effects, transport, and fate of mercury: a general review

Mercury at low concentrations represents a major hazard to microorganisms. Inorganic mercury has been reported to produce harmful effects at 5 μg/l in a culture medium. Organomercury compounds can exert the same effect at concentrations 10 times lower than this. The organic forms of mercury are generally more toxic to aquatic organisms and birds than the inorganic forms. Aquatic plants are affected by mercury in water at concentrations of 1 mg/l for inorganic mercury and at much lower concentrations of organic mercury. Aquatic invertebrates widely vary in their susceptibility to mercury. In general, organisms in the larval stage are most sensitive. Methyl mercury in fish is caused by bacterial methylation of inorganic mercury, either in the environment or in bacteria associated with fish gills or gut. In aquatic matrices, mercury toxicity is affected by temperature, salinity, dissolved oxygen and water hardness. A wide variety of physiological, reproductive and biochemical abnormalities have been reported in fish exposed to sublethal concentrations of mercury. Birds fed inorganic mercury show a reduction in food intake and consequent poor growth. Other (more subtle) effects in avian receptors have been reported (i.e., increased enzyme production, decreased cardiovascular function, blood parameter changes, immune response, kidney function and structure, and behavioral changes). The form of retained mercury in birds is more variable and depends on species, target organ and geographical site. With few exceptions, terrestrial plants (woody plants in particular) are generally insensitive to the harmful effects of mercury compounds.     

Biogeochemistry of mercury in the Amazonian environment

In this paper, the processes that affect mercury (Hg) cycling in the Amazonian environment were reviewed, criticized and new directions of research are proposed. The discussion of the origin of the mercury contamination, whether natural or anthropogenic is marked by a lack of fundamented arguments from both sides. Undoubtedly mercury inputs from gold mining have locally increased environmental concentrations, but in the whole Amazon, these loads would be insignificant, considering the high concentrations observed by some authors in remote soils. A reasonable process that should explain these elevated concentrations in soil is that B horizons function as a mercury "sponge" that have been accumulating mercury over a geological time scale, releasing it back to cycling during erosion and forest fires. The environmental degradation of the Amazonian forest due to human activities is probably enhancing the release of that mercury to the cycle. Mercury transformations in reduced, anoxic environments--sediments and waters--are also a key problem for the understanding of the environmental methylation. The studies that have been carried out in the Amazonian environment are too restricted and results permit only circumstantial conclusions. Large efforts must be directed to monitoring programs considering time and space variability.     

Spatio-temporal distribution of organic and inorganic pollutants from Lake Geneva (Switzerland) reveals strong interacting effects of sewage treatment plant and eutrophication on microbial abundance

Variation with depth and time of organic matter (carbon, nitrogen, phosphorus), inorganic pollutant (mercury), as well as bacterial abundance and activity, were investigated for the first time in sediment profiles of different parts of Lake Geneva (Switzerland) over the last decades. The highest organic contents (about 32%), mercury concentration (27 mg kg⁻¹), bacterial abundance (in order of 9 × 10⁹ cell g⁻¹ dry sediment), and bacterial activity (1299 Relative Light Units (RLU)) were found in the highly polluted sediments contaminated by the waste water treatment plant (WWTP) discharge, which deposited during the period of cultural eutrophication. Such data, which contrast with the other sampled sites from deeper and more remote parts of the lake, prove that the organic matter and nutrients released from the municipal WWTP have considerable effects on bacterial abundance and activities in freshwater sediments. In fact, the relatively unpolluted deepwater sites and the coastal polluted site show large synchronous increases in bacterial densities linked to the anoxic conditions in the 1970s (lake eutrophication caused by external nutrient input) that subsequently increased the nutrient loading fluxes. These results show that the microbial activities response to natural or human-induced changing limnological conditions (e.g., nutrient supply, oxygen availability, redox conditions) constitutes a threat to the security of water resources, which in turn poses concerns for the world’s freshwater resources in the context of global warming and the degradation of water quality (oxygen depletion in the bottom water due to reduced deep waters mixing). Moreover, the accumulation of inorganic pollutants such as high mercury (methyl-mercury) concentration may represent a significant source of toxicity for sediment dwelling organisms.     

Mercury methylation in aquatic systems affected by acid deposition

Recently, it has been noted that fish in acidified lakes may contain elevated levels of mercury. While there is correlation among lakes between depressed pH and high mercury concentrations in fish, the cause of this problem is unknown. A number of hypotheses have been advanced in explanation, including increased mercury deposition, changes in mercury mobility due to acidification, pH dependent changes in mercury uptake by biota, and alterations in population size and/or structure which result in increased bioaccumulation in fish. Because fish accumulate mercury mainly in an organic form, methylmercury, changes in the biogeochemical cycling of this compound might account for elevated bioaccumulation. Mercury methylation is predominantly a microbial process which occurs in situ in lakes. This review focuses on microbiological and biogeochemical changes that may lead to increased levels of methylmercury in fresh waters impacted by acid-deposition. In particular, we focus on the hypothesis that sulfate-reducing bacteria are important mediators of metal methylation in aquatic systems and, moreover, that sulfate-deposition may stimulate methylmercury production by enhancing the activity of sulfate-reducing bacteria in sediments.     

Algal-bacterial interactions in metal contaminated floodplain sediments

The aim of the present study was to investigate algal-bacterial interactions in a gradient of metal contaminated natural sediments. By means of multivariate techniques, we related the genetic structure (denaturing gradient gel electrophoresis, DGGE) and the physiological structure (community-level physiological profiling, CLPP) of the bacterial communities to the species composition of the algal communities and to the abiotic environmental variables, including metal contamination. The results revealed that genetic and physiological structure of the bacterial communities correlated with the species composition of the algal community, but hardly to the level of metal pollution. This must be interpreted as an indication for a strong and species-specific linkage of algal and bacterial species in floodplain sediments. Metals were, however, not proven to affect either the algal or the bacterial communities of the Dutch river floodplains.     

The roles of biological interactions and pollutant contamination in shaping microbial benthic community structure

Biological interactions between metazoans and the microbial community play a major role in structuring food webs in aquatic sediments. Pollutants can also strongly affect the structure of meiofauna and microbial communities. This study aims investigating, in a non-contaminated sediment, the impact of meiofauna on bacteria facing contamination by a mixture of three PAHs (fluoranthene, phenanthrene and pyrene). Sediment microcosms were incubated in the presence or absence of meiofauna during 30 days. Bioremediation treatments, nutrient amendment and addition of a hydrocarbon-degrading bacterium, were also tested to enhance PAH biodegradation. Results clearly show the important role of meiofauna as structuring factor for bacterial communities with significant changes observed in the molecular fingerprints. However, these structural changes were not concomitant with changes in biomass or function. PAH contamination had a severe impact on total meiofaunal abundance with a strong decrease of nematodes and the complete disappearance of polychaetes and copepods. In contrast, correspondence analysis, based on T-RFLP fingerprints, showed that contamination by PAH resulted in small shifts in microbial composition, with or without meiofauna, suggesting a relative tolerance of bacteria to the PAH cocktail. The PAH bioremediation treatments were highly efficient with more than 95% biodegradation. No significant difference was observed in presence or absence of meiofauna. Nutrient addition strongly enhanced bacterial and meiofaunal abundances as compared to control and contaminated microcosms, as well as inducing important changes in the bacterial community structure. Nutrients thus were the main structural factor in shaping bacterial community composition, while the role of meiofauna was less evident.     

Mercury capture into biogenic amorphous selenium nanospheres produced by mercury resistant Shewanella putrefaciens 200

Shewanella putrefaciens 200, resistant to high concentration of Hg(II), was selected for co-removal of mercury and selenium from aqueous medium. Biogenic Hg(0) reduced from Hg(II) by S. putrefaciens 200 was captured into extracellular amorphous selenium nanospheres, resulting in the formation of stable HgSe nanoparticles. This bacterial reduction could be a new strategy for mercury removal from aquatic environments without secondary pollution of mercury methylation or Hg(0) volatilization.     

Effects of temperature and fertilization on total vs. active bacterial communities exposed to crude and diesel oil pollution in NW Mediterranean Sea

The dynamics of total and active microbial communities were studied in seawater microcosms amended with crude or diesel oil at different temperatures (25, 10 and 4 °C) in the presence/absence of organic fertilization (Inipol EAP 22). Total and hydrocarbon-degrading microbes were enumerated by fluorescence microscopy and Most Probable Number (MPN) method, respectively. Total (16S rDNA-based) vs. active (16S rRNA) bacterial community structure was monitored by Capillary-Electrophoresis Single Strand Conformation Polymorphism (CE-SSCP) fingerprinting. Hydrocarbons were analyzed after 12 weeks of incubation by gas chromatography-mass spectrometry. Total and hydrocarbon-degrading microbial counts were highly influenced by fertilization while no important differences were observed between temperatures. Higher biodegradation levels were observed in fertilized microcosms. Temperature and fertilization induced changes in structure of total bacterial communities. However, fertilization showed a more important effect on active bacterial structure. The calculation of Simpson's diversity index showed similar trends among temperatures whereas fertilization reduced diversity index of both total and active bacterial communities.     

Recent trends of biocides in pikes of the Lake Päijänne

Pikes were sampled in May 1980 from three areas of the Lake Päijänne, Finland and analyzed for their contents of total mercury, methyl mercury, hexachlorobenzene (HCB), DDE, PCB and chlorophenolic residues. An improved method for methyl mercury determination was applied and 82–84 % methylation of mercury in pikes regardless of area or biological variation was observed. Statistical analysis with previous results from the same areas gave a very significant decreasing trend of mercury levels at all three areas from 1970 to 1980. Future levels of mercury in fish to be consumed as food could be estimated from the trend regression. The very low levels of DDE and PCB showed some increasing trend when the influence of fat contents was eliminated by covariance analysis. General appearance of HCB at sub-ppb level was observed. Also pentachlorophenol occured at 10–70 ppb (fresh weight) levels at all areas, but the other chlorophenols were abundant only at Tiirinselkä which is most contaminated by pulp bleaching effluents.     

Bacterial community structure analyses to assess pollution of water and sediments in the Lake Shkodra/Skadar, Balkan Peninsula

- Goal, Scope, Background. Lake Skadar is the largest lake in Balkan Peninsula, located on the Montenegro-Albanian border. The unique features of the lake and wide range of endemic and rare or endangered plant and animal species resulted in the classification of the Skadar as a wetland site of international significance. In spite of its importance the Lake is influenced by inflowing waters from river Morača and other regional rivers contaminated by the industry, municipal and agricultural activities in the area. Therefore, the Lake has been subject of various physical, chemical, biological and toxicological examinations. However, community-level analyses are most relevant to assess the effect of stressors on aquatic ecosystems. In the present study bacterial community structure among differently polluted sites of the lake was compared by genetic fingerprinting technique. Methods Water and sediment samples were collected from five differently polluted sampling sites on the Lake Skadar in spring and autumn of the same year. The bacterial community structure in the samples was characterized and compared by temporal temperature gel electrophoresis (TTGE) analysis of polymerase chain reaction-amplified bacterial 16S rRNA genes. Results and Discussion The TTGE analysis resulted in many distinguishable and reproducible band patterns, allowing reliable comparison of bacterial communities among sampling sites. Results on the bacterial community structure revealed that three of the selected locations can be considered as sites that have not shown any pollution degradation determined by our method, due to similar structure of bacterial community in the sediment samples. On the other hand, significant shifts in bacterial community structure in the mouth of the river Morača and Plavnica were shown. Since the results coincide with some of the bioassays and chemical analysis performed previously, the changes in bacterial community structure are explained as an effect of antropogenic pollution on the lake ecosystem by waters of river Morača and stream Plavnica. Conclusion The TTGE has proven to be an efficient and reliable method to monitor bacterial dynamics and community shifts in aquatic environment, especially in the sediments. Within the variety of environmental quality assessments the use of TTGE analyses of bacterial community is strongly recommended, particularly as an initial investigation. However, in any conclusion on the state of the environment, the TTGE results should be combined to some other biological, chemical and hydrological data. Recommendation and Outlook Since prokaryotes are a crucial group of organisms in the biosphere, the ecosystem function studies are largely based on bacterial communities. Therefore, bacterial community structure analysis should be a part of an integrated weight of evidence approach in pollution assessment. In case of Triad approach, consisting of chemical analyses, bioassays, and community studies in the field, the TTGE bacterial community structure analyses should be placed in the later Triad leg. In comparison to other community studies, based on various biotic indices, the TTGE bacterial community analysis has proven to be very sensitive, reliable and less time consuming.     

Comparison of Microbial Pyrene and Benzo[a]Pyrene Mineralization in Liquid Medium,Soil Slurry,and Soil

The microbial degradation of ¹⁴C-pyrene and ¹⁴C-benzo[a]pyrene by a bacterial mixed culture was studied within a mixture of the PAHs phenanthrene, anthracene, pyrene, fluoranthene, and benzo[a]pyrene as sole carbon source in the different culture systems: (i) liquid medium, (ii) soil slurry (surface and grinding influence), and (iii) soil. The fate of these two labeled compounds was followed in these systems with an emphasis on mineralization to carbon dioxide, extractability, and adsorption to humic materials and formation of unextractable residual. Mineralization showed the most obvious differences: soil slurries achieved the best results both concerning the extent of mineralization and the time required. The highest extent of pyrene mineralization (54% within 21 days) was observed in soil slurries; in liquid media, pyrene mineralization was slower, but reached approximately the same extent (54% in 150 days); in soils, mineralization reached only 36% of added pyrene after 160 days. Benzo[a]pyrene was mineralized in a mixture of PAHs in soil slurries to an extent of 34% within 70 days, whereas mineralization in liquid medium and soil occurred in the range of 5% (70 days). Mineralization of benzo[a]pyrene in sand slurries was lower compared to soil slurries (19% in sand slurries vs. 32% in soil slurries within 50 days).     

白洋淀表层沉积物细菌多样性及影响因素

为探究不同富营养化水体沉积物中细菌群落结构的差异及驱动因素,以白洋淀表层沉积物细菌为研究对象,通过高通量测序方法,分析了2种富营养水平下细菌群落结构组成、多样性以及与环境因子的相关性。结果表明,细菌群落多样性随富营养化水平升高而下降;重度和中度富营养化水平下的细菌群落结构有差异,重度富营养化水平下绿弯菌门丰度显著提高。总体而言,不同污染程度水体沉积物细菌群落结构在门水平上没有明显差异,沉积物中的优势菌门依次为变形菌门(31%~43%)、绿弯菌门(10%~21%)和拟杆菌门(9%~20%)。微生物群落与环境因子相关性热图表明,上覆水TP和${{\rm{NH}}_4^ + }$-N、底泥TP和${{\rm{NO}}_3^ - }$-N是白洋淀水体底泥细菌群落多样性的主要影响因素。白洋淀不同富营养化水体沉积物细菌多样性存在差异,磷含量是细菌群落结构的制约因素。     

Preparation of coal slurry with organic solvents

In this study, various organic solvents were used to prepare coal slurries and the rheological and thermal properties of coal-organic solvent slurries were examined. Solvents with molecules containing unpaired electrons (high basicity) show high extraction power and cause swelling of coal. Therefore, coal-organic solvent slurries usually showed higher viscosities compared to coal-water slurry. In addition, coal slurries prepared by alcohols and cyclohexanone demonstrated lower settling rates but a high specific sedimentation volume presumably because these solvents swelled coal particles well and led to the formation of weak gel structures in the bulk. In addition, ethanol and cyclohexanone are capable of breaking a considerable amount of hydrogen bonds in coal and subsequently opening up the structures. Thus, more surface area is available for combustion and the combustion rate of coal slurries was increased.     

Aquatic plant debris improve phosphorus sorption into sediment under anoxic condition

The effects of plant debris on phosphorus sorption by anoxic sediment were investigated. Addition of plant debris significantly enhanced the decrease of soluble relative phosphorus (SRP) in overlying water at both 10 and 30 °C during the 30-day investigation. Both cellulose and glucose, two typical plant components, also clearly enhanced the SRP decrease in anoxic overlying water. The measurement of phosphorus (P) fractions in sediment revealed that the levels of unstable P forms were decreased by plant debris addition, whereas the opposites were true for stable P forms. However, under sterilized condition, plant debris/glucose addition has no effect on the SRP decrease in overlying water. Overall, our results suggested that plant debris improve P sorption into sediment under anoxic condition through a microorganism-mediated mechanism.     

Comparison of microbial pyrene and benzo[a]pyrene mineralization in liquid medium, soil slurry, and soil

The microbial degradation of 14C-pyrene and 14C-benzo[a]pyrene by a bacterial mixed culture was studied within a mixture of the PAHs phenanthrene, anthracene, pyrene, fluoranthene, and benzo[a]pyrene as sole carbon source in the different culture systems: (i) liquid medium, (ii) soil slurry (surface and grinding influence), and (iii) soil. The fate of these two labeled compounds was followed in these systems with an emphasis on mineralization to carbon dioxide, extractability, and adsorption to humic materials and formation of unextractable residual. Mineralization showed the most obvious differences: soil slurries achieved the best results both concerning the extent of mineralization and the time required. The highest extent of pyrene mineralization (54% within 21 days) was observed in soil slurries; in liquid media, pyrene mineralization was slower, but reached approximately the same extent (54% in 150 days); in soils, mineralization reached only 36% of added pyrene after 160 days. Benzo[a]pyrene was mineralized in a mixture of PAHs in soil slurries to an extent of 34% within 70 days, whereas mineralization in liquid medium and soil occurred in the range of 5% (70 days). Mineralization of benzo[a]pyrene in sand slurries was lower compared to soil slurries (19% in sand slurries vs. 32% in soil slurries within 50 days).     

微量磺胺甲恶唑对饮用水管网生物膜群落及抗性基因的影响与控制

针对饮用水管网系统可能存在的微生物风险问题,采用模拟不同处理条件下的输配水管道系统,通过宏基因组学分析探究微量磺胺甲恶唑以及次氯酸钠消毒对管道中生物膜与抗性基因组成的影响。结果表明,2 μg·L⁻¹磺胺甲恶唑的添加对微生物群落以及抗性基因组成无明显影响,而浮霉菌门细菌表现出很强的抗次氯酸钠消毒能力。在未消毒条件下丰度前十的抗性基因与携带差异性抗性基因的细菌在消毒后丰度均明显有所下降,次氯酸钠消毒使ARGs总量下降了91.9%,因此,次氯酸钠消毒通过控制携带抗性基因物种从而有效控制群落抗性基因的传播。同时,通过组间显著性差异的功能基因与组间显著性差异的抗性基因相关性分析,功能基因的变化情况与抗性基因变化情况一致,因此,长期消毒改变了细菌群落组成及其功能,并最终影响抗性基因传播。这项研究有助于控制长期运行的饮用水管网输配系统中可能存在的包括抗药基因在内的微生物相关风险问题。