Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots?

Fungal endophytes are found in asymptomatic photosynthetic tissues of all major lineages of land plants. The ubiquity of these cryptic symbionts is clear, but the scale of their diversity, host range, and geographic distributions are unknown. To explore the putative hyperdiversity of tropical leaf endophytes, we compared endophyte communities along a broad latitudinal gradient from the Canadian arctic to the lowland tropical forest of central Panama. Here, we use molecular sequence data from 1403 endophyte strains to show that endophytes increase in incidence, diversity, and host breadth from arctic to tropical sites. Endophyte communities from higher latitudes are characterized by relatively few species from many different classes of Ascomycota, whereas tropical endophyte assemblages are dominated by a small number of classes with a very large number of endophytic species. The most easily cultivated endophytes from tropical plants have wide host ranges, but communities are dominated by a large number of rare species whose host range is unclear. Even when only the most easily cultured species are considered, leaves of tropical trees represent hotspots of fungal species diversity, containing numerous species not yet recovered from other biomes. The challenge remains to recover and identify those elusive and rarely cultured taxa with narrower host ranges, and to elucidate the ecological roles of these little-known symbionts in tropical forests.     

Absorption and retention of polydimethylsiloxanes (silicones) in fish: Preliminary experiments†

Hydrophobicity and bioaccumulation potential of linear and cyclic polydimethylsiloxane (PDMS) oligomers were estimated by reversed‐phase liquid chromatography and feeding experiments with guppies (Poecilia reticulata). PDMS concentrations in fish were determined by capillary column gas chromatography and gas chromatography‐mass spectrometry. In contrast to polychlorinated biphenyls (PCBs), only very small amounts of PDMS were retained by the fish after six weeks feeding.     

How do nutrient conditions and species identity influence the impact of mesograzers in eelgrass-epiphyte systems?

Coastal eutrophication is thought to cause excessive growth of epiphytes in eelgrass beds, threatening the health and survival of these ecologically and economically valuable ecosystems worldwide. Mesograzers, small crustacean and gastropod grazers, have the potential to prevent seagrass loss by grazing preferentially and efficiently on epiphytes. We tested the impact of three mesograzers on epiphyte biomass and eelgrass productivity under threefold enriched nutrient concentrations in experimental indoor mesocosm systems under summer conditions. We compared the results with earlier identical experiments that were performed under ambient nutrient supply. The isopod Idotea baltica, the periwinkle Littorina littorea, and the small gastropod Rissoa membranacea significantly reduced epiphyte load under high nutrient supply with Rissoa being the most efficient grazer, but only high densities of Littorina and Rissoa had a significant positive effect on eelgrass productivity. Although all mesograzers increased epiphyte ingestion with higher nutrient load, most likely as a functional response to the quantitatively and qualitatively better food supply, the promotion of eelgrass growth by Idotea and Rissoa was diminished compared to the study performed under ambient nutrient supply. Littorina maintained the level of its positive impact on eelgrass productivity regardless of nutrient concentrations.     

HCHs and DDTs in Yellow River of Henan section—a typical agricultural area in China: levels,distributions and risks

The levels, potential sources and ecological risks of hexachlorocyclohexanes (HCHs) and dichlorodiphenyltrichloroethanes (DDTs) in Yellow River of Henan section, a typical agricultural area in China, were investigated. Surface water samples and suspended particulate matters (SPMs) were collected from 23 sites during two seasons. In wet season, the residues of ∑HCHs (α-HCH, β-HCH, γ-HCH and δ-HCH) and ∑DDTs (p,p′-DDT, o,p′-DDT, p,p′-DDE, p,p′-DDD) ranged from 41.7 to 290 and 4.42 to 269 ng/L in surface water, while those varied from 0.86 to 157 and 1.79 to 96.1 ng/g dw in SPM, respectively. Moreover, in surface water, the levels of HCHs and DDTs in wet season were much higher than those in dry season. The reverse was true for residues of HCHs and DDTs in SPM. Compared with the large rivers in other regions, the levels of HCHs and DDTs in the studied area ranked at high levels and the residual concentrations might cause adverse biological risk, especially for ∑HCHs during wet season. Distributions of HCHs and DDTs delineated that the input of tributaries made a significant effect on the residue of HCHs and DDTs in the mainstream. ∑HCHs in surface water were consist of 26.7 % α-HCH, 30.0 % β-HCH, 37.9 % γ-HCH and 5.45 % δ-HCH and those in SPM contained 5.16 % α-HCH, 22.1 % β-HCH, 60.5 % γ-HCH and 12.2 % δ-HCH on average. Combined with ratios of α-HCH/γ-HCH in surface water (0.70) and in SPM (0.09), the results strongly indicated that lindane was recently used or discharged in the studied area. The mean percentage of DDTs′ isomers were 28.7 % p,p′-DDT, 29.8 % o,p′-DDT, 28.1 % p,p′-DDE and 13.4 % p,p′-DDD in surface water, while those were 12.5 % p,p′-DDT, 31.8 % o,p′-DDT, 30.5 % p,p′-DDE and 25.1 % p,p′-DDD in SPM. The ratios of (DDE + DDD)/∑DDTs and o,p′-DDT/p,p′-DDT revealed that the DDTs in the studied area mainly derived from long-term weathering of technical DDTs residue and the input of dicofol.     

Open and closed seascapes: where does habitat patchiness create populations with high fractions of self-recruitment?

Which populations are replenished primarily by immigrants (open) and which by local production (closed) remains an important question for management with implications for response to exploitation, protection, and disturbance. However, we lack methods for predicting population openness. Here, we develop a model for openness and show that considering habitat isolation explains the existence of surprisingly closed populations in high-dispersal species, including many marine organisms. Relatively closed populations are expected when patch spacing is more than twice the standard deviation of a species'. dispersal kernel. In addition, natural scales of habitat patchiness on coral reefs are sufficient to create both largely open and largely closed populations. Contrary to some previous interpretations, largely closed marine populations do not require mean dispersal distances that are unusually short, even for species with relatively long pelagic larval durations. We predict that habitat patchiness has strong control over population openness for many marine and terrestrial species with a highly dispersive life stage and relatively sedentary adults. This information can be used to make initial predictions about where populations will be more or less resilient to local exploitation and disturbance.     

Sedentary or mobile? Variability in space and depth use of an exploited coral reef fish

Movement of fishes defines the distribution and abundance of populations and occurs on a range of spatial and temporal scales. To successfully parameterise assessments and design management strategies for exploited fish populations, knowledge and consideration of their movement patterns are essential. Since the efficacy of management approaches vary depending on the sedentary or mobile nature of the target species, presence, space use and depth utilisation were examined to understand the movement patterns of redthroat emperor Lethrinus miniatus. Sixty individuals were monitored for up to 12 months in an acoustic array comprising three coral reefs, and variation in space use and movement patterns was observed among 26 individuals. Half of the individuals were recorded only in proximity of one receiver along the reef edge, while the other half were detected at multiple receivers and used horizontal areas of approximately 4 km². Periods of non-detection and lower detection frequency at night (χ ₁ ²  = 342.157, P < 0.001) indicated individuals may move away from the monitored reef edge to the adjacent sandy habitat, but most movements outside the array remain unknown. Long-distance movement was recorded for one individual, recaptured ~160 km from the release location. Generally, no trends in depth use were apparent, L. miniatus inhabited a variety of depths, which were not related to individual size or time of day, yet some effect of month was evident. Variation in movement among adult L. miniatus indicates that while some individuals undergo broader-scale movement, spatial closures that cover individual reefs (>4 km²) could provide protection from fishing for the proportion of the population that displayed high site fidelity and moderate-sized activity spaces (over a period of up to 12 months).     

How long can fisheries management delay action in response to ecosystem and climate change?

Sustainable management of fisheries is often compromised by management delaying implementation of regulations that reduce harvest, in order to maintain higher catches in the short-term. Decreases or increases in fish population growth rate driven by environmental change, including ecosystem and climate change, affect the harvest that can be taken sustainably. If not acted on rapidly, environmental change could result in unsustainable fishing or missed opportunity for higher catches. Using simulation models of harvested fish populations influenced by environmental change, we explore how long fisheries managers can afford to wait before changing harvest regulations in response to changes in population growth. If environmental change causes population declines, delays greater than five years increase the probability of population collapse. Species with fast and highly variable population growth rates are more susceptible to collapse under delays and should be a priority for revised management where delays occur. Generally, the long-term cost of delay, in terms of lost fishing opportunity, exceeds the short-term benefits of overfishing. Lowering harvest limits and monitoring for environmental change can alleviate the impact of delays; however, these measures may be more costly than reducing delays. We recommend that management systems that allow rapid responses to population growth changes be enacted for fisheries management to adapt to ecosystem and climate change.     

Participatory indicator development: what can ecologists and local communities learn from each other?

Given the growing popularity of indicators among policy-makers to measure progress toward conservation and sustainability goals, there is an urgent need to develop indicators that can be used accurately by both specialists and nonspecialists, drawing from the knowledge possessed by each group. This paper uses a case study from the Kalahari, Botswana to show how participatory and ecological methods can be combined to develop robust indicators that are accessible to a range of users to monitor and enhance the sustainability of land management. First, potential environmental sustainability indicators were elicited from pastoralists in three study sites. This knowledge was then evaluated by pastoralists, before being tested empirically using ecological and soil-based techniques. Despite the wealth of local knowledge about indicators, this knowledge was thinly spread. The knowledge was more holistic than published indicator lists for monitoring rangelands, encompassing vegetation, soil, livestock, wild animal, and socioeconomic indicators. Pastoralist preferences for vegetation and livestock indicators match recent shifts in ecological theory suggesting that livestock populations reach equilibrium with key forage resources in semiarid environments. Although most indicators suggested by pastoralists were validated through empirical work (e.g., decreased grass cover and soil organic matter content, and increased abundance of Acacia mellifera and thatching grass), they were not always sufficiently accurate or reliable for objective degradation assessment, showing that local knowledge cannot be accepted unquestioningly. We suggest that, by combining participatory and ecological approaches, it is possible to derive more accurate and relevant indicators than either approach could achieve alone.     

Latitudinal gradients in species richness for South American Mytilidae and Ostreidae: can alternative hypotheses be evaluated by a correlative approach?

We tested to what extent mean sea surface temperature, geometric constraints in range size frequency distributions (the mid-domain effect) and geographical coastline distance to the equator are related to species richness of coastal Mytilidae and Ostreidae in the Pacific and Atlantic coasts of South America (excluding islands). The location and magnitude of the peaks in species richness, as well as the shape of the pattern, varied between oceans. Results were not biased by spatial autocorrelation, although strong multicollinearity among predictor variables was detected. However, these regional-extent regression models suggest differences in the causal factors that explain richness gradients of studied bivalves in South American coasts, most likely related to historical events such as the Southeastern Pacific Pleistocene mass extinction of bivalves. Our results reinforced the conclusion that there is no single best explanatory cause for the latitudinal gradient in species richness and showed that the correlative approach is not useful when predictor variables are strongly correlated.     

Are local extinctions and recolonizations continuing at the colder limits of marine fish distributions? Halobatrachus didactylus (Bloch & Schneider, 1801), a possible candidate

In this paper, we compare the populations of the Lusitanian toadfish Halobatrachus didactylus along the Portuguese shore, using a putative fragment of the mitochondrial control region and the first intron of the S7 ribosomal protein gene. This demersal species ranges from the tropical West African coast to the Iberian Peninsula and the Mediterranean, having its northern limit in the Tagus River. For the putative control region, a single haplotype occurs in all fish from Tagus and Sado (the location immediately to the south) with a clear increase in diversity to the South, peaking at Algarve (south Portugal). The data seem to point to a very recent Holocenic colonization of Tagus and Sado from the South (possibly Algarve). We suggest that even small oscillations in sea surface temperature (SST) may cause local extinctions and subsequent recolonizations in populations of thermophilic fish that are at the cold limit of their distributions.     

High genetic diversities and complex genetic structure in an Indo-Pacific tropical reef fish (Chlorurus sordidus): evidence of an unstable evolutionary past?

Historical sea level fluctuations have influenced the genetic structure and evolutionary history of marine species and examining widespread species across their species ranges may elucidate some of these effects. Chlorurus sordidus is a common and widespread parrotfish found on coral reefs throughout the Indo-central Pacific. We used phylogenetic, phylogeographic, and cladistic analyses to examine the genetic composition and population structure of this species across most of its latitudinal range limits. We sequenced 354 bp of the mitochondrial control region I in 185 individuals from nine populations. Populations of C. sordidus displayed high levels of genetic diversity, similar to those recorded for widespread pelagic fish species, but much greater nucleotide diversity values than those previously recorded for other demersal reef fishes. Both phylogenetic and phylogeographic analyses detected strong genetic subdivision at the largest spatial scale (i.e. among oceans). The Pacific Ocean was characterised by weak population genetic structure. Separation of the Hawaiian location from other Pacific and West Indian Ocean sites was evident in phylogenetic analyses, but not from analysis of molecular variance. NCA and isolation-by-distance tests suggested that the genetic structure of this species was the result of multiple contemporary and historical processes, including long-distance colonisation and range expansion arising from fluctuating sea levels, limited current gene flow, and isolation by distance. This pattern is to be expected when historically fragmented populations come into secondary contact. We suggest the patterns of population genetic structure recorded in C. sordidus are caused by large local population sizes, high gene flow, and a recent history of repeated fragmentation and remixing of populations resulting from fluctuating sea levels.Communicated by M.S. Johnson, Crawley     

Invasive species distribution modeling (iSDM): Are absence data and dispersal constraints needed to predict actual distributions?

Species distribution models (SDMs) based on statistical relationships between occurrence data and underlying environmental conditions are increasingly used to predict spatial patterns of biological invasions and prioritize locations for early detection and control of invasion outbreaks. However, invasive species distribution models (iSDMs) face special challenges because (i) they typically violate SDM's assumption that the organism is in equilibrium with its environment, and (ii) species absence data are often unavailable or believed to be too difficult to interpret. This often leads researchers to generate pseudo-absences for model training or utilize presence-only methods, and to confuse the distinction between predictions of potential vs. actual distribution. We examined the hypothesis that true-absence data, when accompanied by dispersal constraints, improve prediction accuracy and ecological understanding of iSDMs that aim to predict the actual distribution of biological invasions. We evaluated the impact of presence-only, true-absence and pseudo-absence data on model accuracy using an extensive dataset on the distribution of the invasive forest pathogen Phytophthora ramorum in California. Two traditional presence/absence models (generalized linear model and classification trees) and two alternative presence-only models (ecological niche factor analysis and maximum entropy) were developed based on 890 field plots of pathogen occurrence and several climatic, topographic, host vegetation and dispersal variables. The effects of all three possible types of occurrence data on model performance were evaluated with receiver operating characteristic (ROC) and omission/commission error rates. Results show that prediction of actual distribution was less accurate when we ignored true-absences and dispersal constraints. Presence-only models and models without dispersal information tended to over-predict the actual range of invasions. Models based on pseudo-absence data exhibited similar accuracies as presence-only models but produced spatially less feasible predictions. We suggest that true-absence data are a critical ingredient not only for accurate calibration but also for ecologically meaningful assessment of iSDMs that focus on predictions of actual distributions.     

Butterfly effects in mimicry? Combining signal and taste can twist the relationship of Müllerian co-mimics

Müllerian co-mimics are aposematic species that resemble each other; sharing a warning signal is thought to be mutually beneficial for the co-mimics by reducing per capita predation risk. In Batesian mimicry, edible mimics avoid predation by resembling an aposematic model species. The protection of both the model and the mimic is weakened when the mimics are abundant compared to the models. The quasi-Batesian view suggests that defended (Müllerian) co-mimics, when unequal in their defences, could also show a Batesian-like trend of increasing mortality with increasing abundance of a less defended “mimic”. We manipulated frequencies of unequally distasteful artificial co-mimics that were prey for great tits. The co-mimics had different signals (imperfect mimicry) but were equally preferred by the birds when palatable. Unexpectedly, when unpalatable, one of the signals was easier for the birds to learn to avoid. Consequently, during predator learning, the signal design of the prey strongly affected mortality of the co-mimics; there was an interaction between the signal and frequency treatments, but increasing the frequency of a less defended “mimic” did not increase co-mimic mortalities as predicted. In contrast, in a memory test that followed, the effect of signal design disappeared; if the birds had experienced high frequency of “mimics” during learning, co-mimic mortalities did subsequently increase. Since the effect of co-mimic frequencies on mortalities changed depending on the signal design of the prey and predator experience, the results suggest that mimetic relationship may be an unpredictable interplay of several factors in addition to taste and abundance.     

Does the composition of the demersal fish assemblages in temperate coastal waters change with depth and undergo consistent seasonal changes?

The aim of this study was to determine whether the composition of the demersal fish fauna in coastal marine waters in temperate Australia changes markedly with increasing water depth and distance from the shore and whether the composition of the fish fauna in water depths of 5 to 35 m undergoes cyclic, seasonal changes. Samples of demersal fishes were therefore collected by trawling over the predominantly sandy substrate at nine sites located in water depths of 5 to 15 m or 20 to 35 m and within 20 km of the shore in four regions along ∼200 km on the lower west coast of Australia. The sampling regime involved trawling for fishes at each site at night in seven consecutive seasons between the summer of 1990/1991 and winter of 1992. A total of 72 435 fishes, representing 77 families, 143 genera and 172 species was caught. The compositions of the fish faunas in offshore waters with depths of 5 to 35 m were shown to differ markedly from those previously recorded for nearshore marine waters in the same regions. However, as some species, such as Sillago burrus, S. vittata, S. bassensis and Rhabdosargus sarba, increase in size, they move out from their nursery areas in nearshore waters into deeper and more offshore waters, where spawning occurs. Ordination showed that, in each of the four regions, the composition of the fish fauna in depths of 5 to 15 m differs from that in depths of 20 to 35 m. This difference is attributable to the fact that some species, such as  S. burrus, S. vittata and Upeneichthys lineatus, are far more abundant in depths of 5 to 15 m, whereas other species, such as S. robusta, U. stotti and Lepidotrigla modesta, occur predominantly in depths of 20 to 35 m. However, the samples collected from the single site that was inshore but in deeper water demonstrate that the composition of the fish fauna is influenced by distance from shore as well as by water depth. The compositions of the fish faunas differed with latitude, largely due to the fact that some subtropical species, such as Polyspina piosae, S. burrus and  S. robusta, did not extend down into the more southern regions. Ordination also showed that the composition of the fish faunas at all but one of the nine sites underwent pronounced and consistent cyclic, seasonal changes. This seasonal cyclicity at the different sites was attributable to sequential patterns of immigrations and emigrations by a number of fish species during the course of the year. These seasonal migrations involved, inter alia (1) movements of certain species from their nursery areas into these deeper waters, e.g.  S. bassensis and Scobinichthys granulatus; (2) migrations into and off the sandy areas of the inner continental shelf, e.g. Arnoglossus muelleri; (3) migrations to spawning areas, e.g. Sillago robusta; and (4) movements into areas where detached macrophytes accumulate in winter, e.g. Cnidoglanis macrocephalus and Apogon rueppellii. Received: 21 August 1998 / Accepted: 9 February 1999     

Matching and mismatching stable isotope (δ13C and δ15N) ratios in fin and muscle tissue among fish species: a critical review

Using non-lethal tissue sampling for stable isotope analysis has become standard in many fields, but not for fishes, despite being desirable when species are rare or protected, when repeated sampling of individuals is required or where removal may bias other analyses. Here, we examine the utility of fish dorsal fin membrane as an alternative to muscle for analyzing δ¹³C and δ¹⁵N ratios in two reef fish species (blue cod Parapercis colias and spotty Notolabrus celidotus) that have differing feeding modes. Both species exhibited evidence of size-based feeding from fin δ¹⁵N values, but not from muscle. Blue cod fin δ¹⁵N increased steadily throughout the sampled size range (213–412 mm fork length), whereas spotty exhibited a distinct ontogenetic diet shift at approximately 120–140 mm fork length after which size-based feeding did not occur. Fin membrane was higher than muscle in δ¹³C in both species and in δ¹⁵N for blue cod, but fin δ¹⁵N was lower than muscle in spotty. The δ¹³C and δ¹⁵N fin–muscle offsets were constant in spotty regardless of size, while in blue cod, δ¹³C was constant with fish size, but δ¹⁵N offsets increased with increasing fish size. Non-lethal sampling utilizing fin tissue can be employed to estimate stable isotope values of muscle in fishes, but it is necessary to assess relationships among tissues and the effects of fish size on isotope values a priori for each species studied. Our data indicated that fin membrane may be a more sensitive tissue than muscle for detecting size-based feeding in some fish species using stable isotopes. A critical literature review revealed inconsistencies in tissue types tested, little understanding of tissue-specific trophic shift or turnover rates, and pseudo-replicated analyses leading to erroneous postulating of 1:1 relationships between tissues.     

Irrigation projects in Ethiopia: what can be done to enhance effectiveness under ‘challenging contexts’?

Investment in small scale irrigation (SSI) is crucial to sustain food security and livelihoods of smallholders. In Ethiopia, the government and development partners show a growing interest in developing irrigation projects. The success of irrigation projects is determined by governance and socio-cultural contexts. Yet the lack of thorough understanding of the challenging contexts undermines the efforts to achieve sustainability outcomes in irrigation projects. This article identifies the challenging contexts to irrigation projects, examines how the challenging contexts influence the effectiveness of irrigation projects, and indicates ways of improving the effectiveness of irrigation projects under the existing challenging contexts. Data were collected between April and December 2011 in three regional states of Ethiopia using in-depth interviews and focus group discussions. The lack of governance capacity and accountability are critical challenges for the sustainability of the irrigation projects. In addition, the poor consideration of local knowledge and the use of top-down approaches in planning and implementing the irrigation projects, and lack of equitable access to the irrigation schemes result in poor ownership of projects among farmers. Improving the funding scheme to support long-term capacity building at national and local levels, and in understanding the socio-cultural contexts of the intervention areas; planning irrigation projects with due consideration of the existing challenging contexts, and with active engagement of the local community, are important for the long-term viability and sustainability of irrigation projects.