Defining Critical Habitats of Threatened and Endemic Reef Fishes with a Multivariate Approach

Understanding critical habitats of threatened and endemic animals is essential for mitigating extinction risks, developing recovery plans, and siting reserves, but assessment methods are generally lacking. We evaluated critical habitats of 8 threatened or endemic fish species on coral and rocky reefs of subtropical eastern Australia, by measuring physical and substratum‐type variables of habitats at fish sightings. We used nonmetric and metric multidimensional scaling (nMDS, mMDS), Analysis of similarities (ANOSIM), similarity percentages analysis (SIMPER), permutational analysis of multivariate dispersions (PERMDISP), and other multivariate tools to distinguish critical habitats. Niche breadth was widest for 2 endemic wrasses, and reef inclination was important for several species, often found in relatively deep microhabitats. Critical habitats of mainland reef species included small caves or habitat‐forming hosts such as gorgonian corals and black coral trees. Hard corals appeared important for reef fishes at Lord Howe Island, and red algae for mainland reef fishes. A wide range of habitat variables are required to assess critical habitats owing to varied affinities of species to different habitat features. We advocate assessments of critical habitats matched to the spatial scale used by the animals and a combination of multivariate methods. Our multivariate approach furnishes a general template for assessing the critical habitats of species, understanding how these vary among species, and determining differences in the degree of habitat specificity. Definición de Hábitats Críticos para Peces Arrecifales Amenazados y Endémicos Mediante un Método Multivariado     

Effects of an Invasive Plant on Population Dynamics in Toads

When populations decline in response to unfavorable environmental change, the dynamics of their population growth shift. In populations that normally exhibit high levels of variation in recruitment and abundance, as do many amphibians, declines may be difficult to identify from natural fluctuations in abundance. However, the onset of declines may be evident from changes in population growth rate in sufficiently long time series of population data. With data from 23 years of study of a population of Fowler's toad (Anaxyrus [ = Bufo] fowleri) at Long Point, Ontario (1989–2011), we sought to identify such a shift in dynamics. We tested for trends in abundance to detect a change point in population dynamics and then tested among competing population models to identify associated intrinsic and extrinsic factors. The most informative models of population growth included terms for toad abundance and the extent of an invasive marsh plant, the common reed (Phragmites australis), throughout the toads’ marshland breeding areas. Our results showed density‐dependent growth in the toad population from 1989 through 2002. After 2002, however, we found progressive population decline in the toads associated with the spread of common reeds and consequent loss of toad breeding habitat. This resulted in reduced recruitment and population growth despite the lack of significant loss of adult habitat. Our results underscore the value of using long‐term time series to identify shifts in population dynamics coincident with the advent of population decline. Efectos de una Planta Invasora sobre las Dinámica Poblacional de Sapos     

Influence of Habitat Patchiness on Genetic Diversity and Spatial Structure of a Serpentine Endemic Plant

Abstract: Conservation of rare plant species often involves small, local populations dispersed within apparently suitable habitat. We used enzyme electrophoresis to study genotypic diversity in 32 populations of Calystegia collina , a self-incompatible clonal plant endemic to serpentine substrate in northern California's Coast Range. Genotypic diversity within a population was a good predictor of seed set by randomly marked flowers. Ramets from the most abundant genotypes in a population were most likely to produce flowers, but flowers from abundant genotypes were less likely to produce seed capsules than were flowers from rarer genotypes. These results are consistent with previous findings that reproductive success in C. collina is limited by the availability of compatible pollen. On small serpentine outcrops supporting only one or two populations, C. collina did not show reduced genotypic diversity or heterozygosity compared with populations on large outcrops supporting many populations. Instead, genotypic diversity and outcrop size had strong but independent influences on reproductive success. Although large serpentine outcrops contain more populations and provide better conditions for flower and seed production, significant diversity of unique genotypes clearly exists in isolated serpentine outcrops. Our findings suggest that plant conservation strategies must take into account the natural distribution of populations. The effects of habitat fragmentation on C. collina and other plant species that occur naturally in small, discrete patches may be unlike those that have been documented in more recently fragmented species.     

入侵植物空心莲子草的入侵机制及综合管理

综合分析空心莲子草(Alternanthera philoxeroides)的入侵机制并探讨其防治方法,指出空心莲子草的成功入侵与其自身的生物学特性,如无性繁殖、较强的表观可塑性、广泛的适应性、强大的抗逆性等密切相关,其次与生境的可入侵性、人为干扰等外在因素也息息相关。应将人工防除与化学、生物防除手段相结合,加强区域间管理,适时适地采取最佳防除措施。需加强入侵种空心莲子草与本地种的竞争关系研究,运用本地种防止其入侵。     

Predicting Recovery Criteria for Threatened and Endangered Plant Species on the Basis of Past Abundances and Biological Traits

Recovery plans for species listed under the U.S. Endangered Species Act are required to specify measurable criteria that can be used to determine when the species can be delisted. For the 642 listed endangered and threatened plant species that have recovery plans, we applied recursive partitioning methods to test whether the number of individuals or populations required for delisting can be predicted on the basis of distributional and biological traits, previous abundance at multiple time steps, or a combination of traits and previous abundances. We also tested listing status (threatened or endangered) and the year the recovery plan was written as predictors of recovery criteria. We analyzed separately recovery criteria that were stated as number of populations and as number of individuals (population‐based and individual‐based criteria, respectively). Previous abundances alone were relatively good predictors of population‐based recovery criteria. Fewer populations, but a greater proportion of historically known populations, were required to delist species that had few populations at listing compared with species that had more populations at listing. Previous abundances were also good predictors of individual‐based delisting criteria when models included both abundances and traits. The physiographic division in which the species occur was also a good predictor of individual‐based criteria. Our results suggest managers are relying on previous abundances and patterns of decline as guidelines for setting recovery criteria. This may be justifiable in that previous abundances inform managers of the effects of both intrinsic traits and extrinsic threats that interact and determine extinction risk. Predicción de Criterios de Recuperación para Especies de Plantas en Peligro y Amenazadas con Base en Abundancias Pasadas y Atributos Biológicos     

Positive and Negative Effects of a Threatened Parrotfish on Reef Ecosystems

Species that are strong interactors play disproportionately important roles in the dynamics of natural ecosystems. It has been proposed that their presence is necessary for positively shaping the structure and functioning of ecosystems. We evaluated this hypothesis using the case of the world's largest parrotfish (Bolbometopon muricatum), a globally imperiled species. We used direct observation, animal tracking, and computer simulations to examine the diverse routes through which B. muricatum affects the diversity, dispersal, relative abundance, and survival of the corals that comprise the foundation of reef ecosystems. Our results suggest that this species can influence reef building corals in both positive and negative ways. Field observation and simulation outputs indicated that B. muricatum reduced the abundance of macroalgae that can outcompete corals, but they also feed directly on corals, decreasing coral abundance, diversity, and colony size. B. muricatum appeared to facilitate coral advancement by mechanically dispersing coral fragments and opening up bare space for coral settlement, but they also damaged adult corals and remobilized a large volume of potentially stressful carbonate sediment. The impacts this species has on reefs appears to be regulated in part by its abundance—the effects of B. muricatum were more intense in simulation scenarios populated with high densities of these fish. Observations conducted in regions with high and low predator (e.g., sharks) abundance generated results that are consistent with the hypothesis that these predators of B. muricatum may play a role in governing their abundance; thus, predation may modulate the intensity of the effects they have on reef dynamics. Overall our results illustrate that functionally unique and threatened species may not have universally positive impacts on ecosystems and that it may be necessary for environmental managers to consider the diverse effects of such species and the forces that mediate the strength of their influence. Efectos Positivos y Negativos de un Pez Loro Amenazado Sobre Ecosistemas Arrecifales     

Threatened Species and the Potential Loss of Phylogenetic Diversity: Conservation Scenarios Based on Estimated Extinction Probabilities and Phylogenetic Risk Analysis

Abstract: New species conservation strategies, including the EDGE of Existence (EDGE) program, have expanded threatened species assessments by integrating information about species' phylogenetic distinctiveness. Distinctiveness has been measured through simple scores that assign shared credit among species for evolutionary heritage represented by the deeper phylogenetic branches. A species with a high score combined with a high extinction probability receives high priority for conservation efforts. Simple hypothetical scenarios for phylogenetic trees and extinction probabilities demonstrate how such scoring approaches can provide inefficient priorities for conservation. An existing probabilistic framework derived from the phylogenetic diversity measure (PD) properly captures the idea of shared responsibility for the persistence of evolutionary history. It avoids static scores, takes into account the status of close relatives through their extinction probabilities, and allows for the necessary updating of priorities in light of changes in species threat status. A hypothetical phylogenetic tree illustrates how changes in extinction probabilities of one or more species translate into changes in expected PD. The probabilistic PD framework provided a range of strategies that moved beyond expected PD to better consider worst‐case PD losses. In another example, risk aversion gave higher priority to a conservation program that provided a smaller, but less risky, gain in expected PD. The EDGE program could continue to promote a list of top species conservation priorities through application of probabilistic PD and simple estimates of current extinction probability. The list might be a dynamic one, with all the priority scores updated as extinction probabilities change. Results of recent studies suggest that estimation of extinction probabilities derived from the red list criteria linked to changes in species range sizes may provide estimated probabilities for many different species. Probabilistic PD provides a framework for single‐species assessment that is well‐integrated with a broader measurement of impacts on PD owing to climate change and other factors.     

稻田土壤磷淋失潜力与磷积累的关系

了解稻田土壤磷积累对排水和渗漏液中磷浓度的影响,可为稻田磷素淋失预测提供依据.采用室内模拟方法,研究稻田土壤Olsen-P水平与土壤溶液中磷质量浓度之间的关系.结果表明,土壤溶液中磷质量浓度随土壤Olsen-P水平增加而增加,其中,黏土、壤黏土和壤土的Olsen-P超过临界值(分别为84、65和53 mg·kg-1)后,土壤溶液中磷质量浓度显著增加.土壤Olsen-P水平较低时,黏土、壤黏土和壤土的土壤磷素积累与排水和渗漏液中磷质量浓度之间的关系较为相近,这3类土壤溶液中磷质量浓度与土壤Olsen-P水平存在线性相关关系.而砂土溶液中无明显临界值,砂土溶液中磷质量浓度与土壤Olsen-P水平间也存在线性相关关系.相同Olsen-P水平时,砂质土壤磷淋失潜力明显高于其他土壤.     

Structuring Decisions for Managing Threatened and Endangered Species in a Changing Climate

The management of endangered species under climate change is a challenging and often controversial task that incorporates input from a variety of different environmental, economic, social, and political interests. Yet many listing and recovery decisions for endangered species unfold on an ad hoc basis without reference to decision‐aiding approaches that can improve the quality of management choices. Unlike many treatments of this issue, which consider endangered species management a science‐based problem, we suggest that a clear decision‐making process is equally necessary. In the face of new threats due to climate change, managers’ choices about endangered species require closely linked analyses and deliberations that identify key objectives and develop measurable attributes, generate and compare management alternatives, estimate expected consequences and key sources of uncertainty, and clarify trade‐offs across different dimensions of value. Several recent cases of endangered species conservation decisions illustrate our proposed decision‐focused approach, including Gulf of Maine Atlantic salmon (Salmo salar) recovery framework development, Cultus Lake sockeye salmon (Oncorhynchus nerka) management, and Upper Columbia River white sturgeon (Acipenser transmontanus) recovery planning. Estructuración de Decisiones para Manejar Especies Amenazadas y en Peligro en un Clima Cambiante     

A Lost Link between a Flightless Parrot and a Parasitic Plant and the Potential Role of Coprolites in Conservation Paleobiology

Late Quaternary extinctions and population fragmentations have severely disrupted animal‐plant interactions globally. Detection of disrupted interactions often relies on anachronistic plant characteristics, such as spines in the absence of large herbivores or large fruit without dispersers. However, obvious anachronisms are relatively uncommon, and it can be difficult to prove a direct link between the anachronism and a particular faunal taxon. Analysis of coprolites (fossil feces) provides a novel way of exposing lost interactions between animals (depositors) and consumed organisms. We analyzed ancient DNA to show that a coprolite from the South Island of New Zealand was deposited by the rare and threatened kakapo (Strigops habroptilus), a large, nocturnal, flightless parrot. When we analyzed the pollen and spore content of the coprolite, we found pollen from the cryptic root‐parasite Dactylanthus taylorii. The relatively high abundance (8.9% of total pollen and spores) of this zoophilous pollen type in the coprolite supports the hypothesis of a former direct feeding interaction between kakapo and D. taylorii. The ranges of both species have contracted substantially since human settlement, and their present distributions no longer overlap. Currently, the lesser short‐tailed bat (Mystacina tuberculata) is the only known native pollinator of D. taylorii, but our finding raises the possibility that birds, and other small fauna, could have once fed on and pollinated the plant. If confirmed, through experimental work and observations, this finding may inform conservation of the plant. For example, it may be possible to translocate D. taylorii to predator‐free offshore islands that lack bats but have thriving populations of endemic nectar‐feeding birds. The study of coprolites of rare or extinct taxonomic groups provides a unique way forward to expand existing knowledge of lost plant and animal interactions and to identify pollination and dispersal syndromes. This approach of linking paleobiology with neoecology offers significant untapped potential to help inform conservation and restoration plans. Un Eslabón Perdido entre un Loro No Volador y una Planta Parásita y el Papel Potencial de Coprolitos en Paleobiología de la Conservación     

入侵植物加拿大一枝黄花和本地一枝黄花的遗传多样性比较

为了阐明加拿大一枝黄花成功入侵的机制,利用简单序列重复区间标记(ISSR)方法对加拿大一枝黄花和本地一枝黄花的遗传多样性进行比较研究。从100条引物中筛选出12条引物用于PCR扩增,利用POPGEN32软件对2种一枝黄花进行遗传多样性分析。结果表明,加拿大一枝黄花在物种水平上的多态位点百分率为95.19%,Nei’s基因多样性指数为0.308 5,Shannon’s信息指数为0.415 8;本地一枝黄花在物种水平上的多态位点百分率(89.80%)、Nei’s基因多样性指数(0.249 1)和Shannon’s信息指数(0.383 4)都比加拿大一枝黄花小。加拿大一枝黄花和本地一枝黄花居群间遗传分化系数分别为0.118 2和0.131 3,居群内变异分别为0.881 8和0.868 7,表明2个物种居群间的遗传分化不明显,遗传一致度高,且主要的遗传变异存在于居群内。入侵植物加拿大一枝黄花具有较高遗传多样性,且高于本地一枝黄花,这可能是加拿大一枝黄花成功入侵的原因之一。     

An Experimental Test of Matrix Permeability and Corridor Use by an Endemic Understory Bird

Abstract:  Because of widespread habitat fragmentation, maintenance of landscape connectivity has become a major focus of conservation planning, but empirical tests of animal movement in fragmented landscapes remain scarce. We conducted a translocation experiment to test the relative permeability of three landscape elements (open habitat, shrubby secondary vegetation, and wooded corridors) to movement by the Chucao Tapaculo ( Scelorchilus rubecula ), a forest understory bird endemic to South American temperate rainforest. Forty-one radio-tagged subjects were translocated (individually) to three landscape treatments consisting of small release patches that were either entirely surrounded by open habitat (pasture), entirely surrounded by dense shrubs, or linked to other patches by wooded corridors that were otherwise surrounded by open matrix. The number of days subjects remained in release patches before dispersal (a measure of habitat resistance) was significantly longer for patches surrounded by open habitat than for patches adjoining corridors or surrounded by dense shrubs. These results indicate that open habitat significantly constrains Chucao dispersal, in accord with expectation, but dispersal occurs equally well through wooded corridors and shrub-dominated matrix. Thus, corridor protection or restoration and management of vegetation in the matrix (to encourage animal movement) may be equally feasible alternatives for maintaining connectivity.     

Potential Ecological Distribution of Alien Invasive Species and Risk Assessment: a Case Study of Buffel Grass in Arid Regions of Mexico

Abstract:  Alien invasive species represent a severe risk to biodiversity. Such is the case of buffel grass ( Cenchrus ciliaris L.), a native species of Southern Asia and East Africa, which was introduced to the United States and Mexico for use in improved pasture. Here we present a coarse-grain approach to determine areas where buffel grass can potentially invade in Mexico. Potential species distributions, suitable for an invasion by buffel grass, were obtained through genetic algorithms. We generated the algorithms with databases of herbaria specimens; environmental digital covers of climate, soil texture, and vegetation; and the program called Genetic Algorithm for Rule-Set Prediction. This spatial modeling approach was validated with a case study for the state of Sonora, Mexico, where the occurrence of buffel grass has been proven. The most threatened vegetation types for the specific case of Sonora were desert scrub, mesquite woodlands, and tropical deciduous forest. The model prediction agreed with the field observations recorded in Sonora and allowed us to apply the same procedure to produce a map of the potential sites of buffel grass invasion for Mexico. The areas at risk of invasion mostly occurred in desert scrub, located in the arid and semiarid regions of northern Mexico. This methodology provides an initial baseline for assessment, prevention, and management of alien species that may become invasive under certain environmental conditions. Additionally this modeling approach provides a tool for policy makers to use in making decisions on land-use management practices when alien species are involved.     

Conservation and Management of a Threatened Madagascar Palm Species, Neodypsis decaryi, Jumelle

The dynamics of a remnant population of the palm Neodypsis decaryi were characterized using a linear, stage-structured demographic model. This palm is a threatened keystone species restricted to a narrow ecological zone in southeastern Madagascar. The population showed high mortality rates in the early stages of the life cycle, followed by a period of lower adult mortality. Demographic results indicated that the population was either stable or increasing inside the reserve (λ _m close to 1.0). Sensitivity and elasticity analyses indicated that adult stage classes were the most sensitive to producing changes in population growth rates. Continued biological monitoring is appropriate for the long-term conservation management of this palm inside the reserve. Outside the protected area the population appears to be declining rapidly, mainly because of anthropogenic effects (especially fire and grazing). If the conservation of Neodypsis decaryi is to be successful in the long term, then conservation methods must be carried out in cooperation with local villagers, and the species should be managed as a renewable resource in situ and ex situ. In situ conservation should include cultivation of this species throughout its natural range and protection of the existing viable natural populations. Alternative conservation management practices, both ecologically and economically sustainable, may be useful to alleviate the human pressures on this renewable resource. If leaves of N. decaryi are to be harvested by local people, we recommend restricting annual harvesting to about 25% of leaves per tree per year. Based on sensitivity analysis, seed collection should be kept well below 95% of the yearly crop if harvesting is not to have a significant impact on population growth rates.     

Dose Dependent Interactions Between Ammonification Potential and Bacteria in Three Tropical Pond Ecosystems

Using six different doses of peptone (0.25, 0.50, 0.75, 1.0, 1.25 and 1.50 gl^-1) and nine different periods of inclubation (1, 2, 3, 4, 6, 8, 10, 12 and 14 days), the rates of ammonification potential (AP) were monitored in three tropical ponds of differetn ecological status, during winter and summer periods. During the winter, the AP (ammonifying bacteria) exhibited peaks on day 4 of incubation in all the test doses of peptone in all the three ponds, except in the lowest dose in eutrophic and chemically polluted pond where the peaks preceded by a day. the responses of AP to the lowest doses of substrate did not differ between summer and winter, while the AP-peaks at higher doses were delayed by 2 days in summer. the concentrations of nitrate in vitro were the inverse and direct functions of the AP and dissolved oxygen of water. at moderate dose (0.75 gl^-1) of peptone, both AP and dissolved oxygen at higher doses, and by AP at the lowest dose of peptone.     

干旱区湿地景观植物群落与环境因子的关系

以塔里木河中下游湿地和艾里克湖湿地为研究对象,探讨干旱区湿地生态系统植物群落空间分布格局特征及影响群落分布的主要环境因子.采用双向指示种分析( TWINSPAN)法对研究区植物群落进行分类,并采用无偏对应分析( DCA)法对该分类结果进行验证,定量分析植被与8个土壤环境因子之间的关系.结果表明,调查样方中共出现38种植物,隶属于15科35属.采用TWINSPAN法可将41个样方中植物群落划分为7个类型,这7个群落类型分别以梭梭(Haloxylon ammodendron)、苦杨(Populus laurifolia)、芦苇(Phragmites australis)、胡杨(Populus euphratica)、盐穗木(Halostachys caspica)、刚毛柽柳(Tamarix hispida)、盐角草(Salicornia europaea)为建群种.DCA排序结果表明,土壤含水量和全磷含量是制约研究区域植被分布格局的主要环境因子.