Cloning and expression of RING-finger E3 ubiquitin ligase CsSDIR1 gene in tea plant (Camellia sinensis)北大核心CSCD

Protein ubiquitination regulates many aspects of plant development and stress response. The RING-finger type E3 ubiquitin ligase SDIR1 (salt and drought induced ring finger 1) gene plays a key role in plant stress response. In this study, the full-length cDNA and the promoter sequences of CsSDIR1 were isolated from tea plants using the RT-PCR technology, and its bioinformatics characteristics were systematically analyzed. The expression patterns of CsSDIR1 in various tissues and in response to cold, drought, salt, and ABA treatments were also investigated by quantitative real-time RT-PCR (qRT-PCR). The sequence of CsSDIR1 contains a complete open reading frame of 831 bp, coding for a 276-long amino acid protein with a molecular weight of (Mr) 30.085 × 103 and a theoretical isoelectric point of 6.54. CsSDIR1 was predicted to be a hydrophobic protein localized on the intracellular membranes. The analysis of the amino acid sequence characteristics showed that CsSDIR1 contains two putative transmembrane domains at the N-terminus and a C3H2C3 RING-finger domain at the C-terminus; it shares high similarity with other plants' SDIR1, and has the closest relationship to Actinidia sinensis. A cis-acting regulatory elements prediction showed that the CsSDIR1 promoter contains many cis-acting elements, especially drought and salt stress response elements. The qRT-PCR analysis indicated that the CsSDIR1 gene has a high expression level in stems, followed by roots, leaves, and flowers; the expression of the CsSDIR1 gene is up-regulated by ABA, salt, and drought treatments, whereas it is down-regulated in response to cold stress. These results demonstrated that the CsSDIR1 gene might be involved in the plant stress response of tea trees. © 2018 Science Press. All rights reserved.     

The physiological response and iron and potassium contents in the hairy roots of Brassica rape L. Under cadmium stress北大核心CSCD

The experiments were conducted to investigate the tolerance and enrichment capabilities by elucidating the physiological response and cadmium impact on iron and potassium accumulation amounts of brassica rape hairy roots under different cadmium concentrations by using liquid suspension culture method. The results showed the following. (1) The growth of hairy roots was not significantly different under low cadmium concentrations (below 100 μmol/L), whereas it was obviously inhibited under high cadmium concentrations (more than 100 μmol/L). Further, the maximum fresh weight of brassica rape hairy roots reached 4.34 g under 25 μmol/L cadmium stress after 7 days. (2) The content of ROS in brassica rape hairy roots increased with increasing concentrations of cadmium; the antioxidant enzyme activities of brassica rape hairy roots (SOD, POD, and CAT) decreased first and then increased with increasing cadmium concentrations under 1-day stress, whereas showed an opposite trend under 7-day stress. (3) PI staining and MDA content indicated that cellular damage was more serious with increasing cadmium concentrations. (4) With the increase of cadmium concentrations, cadmium content of hairy roots increased and reached maximum of 2.97 mg/g under 400 μmol/L cadmium stress after 7 days. The iron content also increased significantly with the maximal weight of 14.52 mg/g after 1-day cadmium stress, whereas no significant difference was noted under 7-day cadmium stress. The potassium content under 7-day cadmium stress was 1.6 times of that after 1-day stress (15.73 mg/g). The study showed that the physiological response of Brassica rape hairy roots was correlated with the concentration and time of cadmium stress. Moreover, cadmium stress caused metabolic disorders of iron and potassium in the hairy roots, but the hairy roots of Brassica rape had better enrichment effect on cadmium. © 2018 Science Press. All rights reserved.     

Response of the grain yield and quality of hybrid rice to weak light stress北大核心CSCD

In this study, three rice varieties, Byou268 (low light-sensitive type), Nei5you768 (intermediate type), and Yixiangyou1108 (low light-tolerant), were used as experimental materials to investigate the yield and quality responses of different rice varieties to low light stress under normal light (CK) and low light (SH). The results showed the following: (1) Compared with normal light, the decrease in Yixiangyou1108’s 1 000-grain weight, grain number per spike, and seed setting rate under low light treatment were much lower than those of Nei5you768 and Byou268. The yield decline of Yixiangyou1108 (46.5%) was significantly lower than that of Nei5you768 (56.5%) and Byou268 (69.8%). Yixiangyou1108 showed strong tolerance to low light stress in terms of 1 000-grain weight, seed setting rate, grain number per panicle, and yield. (2) Compared with normal light, the reduction in grain length and width of Yixiangyou1108 under low-light treatment was significantly greater than that of Byou268; however, the reduction in the length-width ratio did not reach a significant level. The amylose content and gel consistency of the rice were significantly reduced. The reduction in amylose content of Yixiangyou1108 (24.5%) was significantly lower than that of Nei5you768 (28.1%) and Byou268 (30.6%); however, the decrease in gel consistency of Yixiangyou1108 (14.7%) was significantly higher than that of Nei5you768 (9.8%) and Byou268 (8.1%). After low light treatment, the characteristic values of the RVA curve of rice changed. The peak viscosity and breakdown viscosity of Yixiangyou1108, Nei5you768, and Byou268 were significantly decreased, but the cold glue viscosity and setback viscosity were significantly increased, while there was no significant difference in the peak time and peak temperature. The response of 1 000-grain weight, grain number per spike, and seed setting rate under low light stress can be used as a yield index of rice breeding with low light tolerance; rice grain type, amylose, and gel consistency; and peak viscosity and hot paset viscosity in RVA characteristic values can be used as quality indexes of low-light-tolerant rice material breeding. © 2022 Science Press. All rights reserved.     

Comparisons in subcellular and biochemical behaviors of cadmium between Iow-Cd and high-Cd accumulation cultivars of pakchoi （Brassica chinensis L.）

Subcellular distributions and chemical forms of cadmium （Cd） in the leaves, stems and roots were investigated in low-Cd accumulation cultivars and high-Cd accumulation cultivars ofpakchoi （Brassica chinensis L.）. Root cell wall played a key role in limiting soil Cd from entering the protoplast, especially in the low-Cd cultivars. The high-Cd cultivars had significantly higher leaf and stem Cd concentrations than the low-Cd cultivars in cell wall fraction, chloroplast/trophoplast fraction, organelle fraction and soluble fraction. In low-Cd cultivars, which were more sensitive and thus had greater physiological needs of Cd detoxification than high-Cd cultivars, leaf vacuole sequestrated higher proportions of Cd. Cd in the form of pectate/protein complexes （extracted by 1 tool. L~ NaC1） played a decisive role in Cd translocation from root to shoot, which might be one of the mechanisms that led to the differences in shoot Cd accumulation between the two types of cultivars. Furthermore, the formation of Cd- phosphate complexes （extracted by 2% HAc） was also involved in Cd detoxification within the roots of pakchoi under high Cd stress, suggesting that the mechanisms of Cd detoxification might be different between low- and high-Cd cultivars.     

Responses of bacterial strains isolated from drinking water environments to N-acyl-L-homoserine lactones and their analogs during biofilm formation

Often as a result ofbiofilm formation, drinking water distribution systems （DWDS） are regularly faced with the problem of microbial contamination. Quorum sensing （QS） systems play a marked role in the regulation of microbial biofilm formation; thus, inhibition of QS systems may provide a promising approach to biofilm formation control in DWDS. In the present study, 22 bacterial strains were isolated from drinking water-related environments. The following properties of the strains were investigated： bacterial biofilm formation capacity, QS signal molecule N-acyl-L-homoserine lactones （AHLs） production ability, and responses to AHLs and AHL analogs, 3-chloro-4-（dichloromethyl）-5-hydroxy-2（5H）- furanone （MX） and 2（5H）-furanone. Four AHLs were added to developed biofilms at dosages ranging from 0.1 nmol.L J to 100nmol.L1. As a result, the biofilm growth of more than 1/4 of the isolates, which included AHL producers and non-producers, were significantly promoted. Further, the biofilm biomasses were closely associated with respective AHLs concentrations. These results provided evidence to support the idea that AHLs play a definitive role in biofilm formation in many of the studied bacteria. Meanwhile, two AHLs analogs demon- strated unexpectedly minimal negative effects on biofilm formation. This suggested that, in order to find an applicable QS inhibition approach for biofilm control in DWDS, the testing and analysis of more analogs is needed.     

Tomato microtubule-associated protein end-binding protein 1 (EB1) mediates tolerance to salt stress北大核心CSCD

The dynamics of microtubules is regulated mainly by microtubule-associated proteins (MAPs) and plays an important role in plant development and response to environmental signals. End-binding protein 1 (EB1) is a MAP specially binding to the microtubule plus end. Blast search of tomato genome showed two EB1 genes, which were named as SlEB1a (Solyc03g116370) and SlEB1b (Solyc02g092950) in this study. Transgenic tomato plants over-expressing SlEB1a or RNA interfering both SlEB1a and SlEB1b were constructed, and their sensitivity to microtubule depolymerization drug propyzamide and salt stress were analyzed. In this study, we determined the role of tomato EB1 (SlEB1) in the response to salt stress. Compared to the wild-type control plants, OE plants were more sensitive to 1 μmol/L propyzamide, whereas RNAi plants were more tolerant to 1 μmol/L propyzamide; in contrast, OE plants were more tolerant to 100 mmol/L NaCl, whereas RNAi plants were more sensitive to 100 mmol/L NaCl. Thus, SlEB1 might positively regulate salt stress response by negatively regulating the dynamics of tomato cortical microtubules. This study forms a basis for how cortical microtubule dynamics plays a role in plant response to salt stress. © 2018 Science Press. All rights reserved.     

Effects of soil warming and nitrogen deposition on leaf and soil stoichiometric characteristics of Cunninghamia lanceolata saplings北大核心CSCD

Warming and nitrogen deposition directly or indirectly affect the plant-soil element cycle under global change. To examine the effects of warming and nitrogen deposition on leaf and soil carbon (C), nitrogen (N), phosphorus (P) contents, and their stoichiometric ratios in Cunninghamia lanceolata saplings, four types of treatments were assigned: control (CT), warming (W, + 4 ºC), nitrogen deposition (N, 40 kg ha-1 a-1), and warming + nitrogen deposition (WN) treatments. The results showed that: (1) compared with CT, W treatment significantly decreased leaf P content by 54.54% and increased leaf C/P and N/P by 85.26% and 83.39%, respectively; WN treatment significantly decreased leaf C content and P content by 1.99% and 51.03%, respectively, but increased the leaf C/P by 68.01% with no significant differences in leaf N content among treatments. The leaf N/P ratio of each treatment was less than 10, but that of the W and WN treatments were closer to 10 than that of the CT treatment. Meanwhile, W and WN treatments significantly increased tree height. (2) No significant differences were observed in soil total carbon (TC), total nitrogen (TN), and total phosphorus (TP) contents among treatments. Compared with CT, W treatment significantly decreased soil C/N by 4.09%, while neither W nor WN treatment affected soil C/P and N/P. W treatment increased the available soil content compared to CT treatment. (3) The correlation analysis showed that leaf N content was significantly negatively correlated with soil C/N in the CT treatment; in the W treatment leaf N content and N/P were significantly positively correlated with soil TN and TP content, respectively. Leaf N content was significantly negatively correlated with soil TC and TN in the N treatment, and leaf contents had no significant correlation with soil C, N, and P contents or their stoichiometric characteristics in the WN treatment. This study showed that N limitation still exists in C. lanceolata saplings. Warming and the interaction between warming and nitrogen deposition could alleviate N limitation and promote the growth of C. lanceolata. © 2022 Authors. All rights reserved.     

Identification of pakchoi cultivars with low cadmium accumulation and soil factors that affect their cadmium uptake and translocation

The selection and use of low-Cd-accumulating cultivar （LCAC） has been proposed as one of the promising approaches in minimizing the entry of Cd in the human food chain. This study suggests a screening criterion of LCACs focusing on food safety. Pot culture and plot experiments were conducted to screen out LCACs from 35 pakchoi cultivars and to identify the crucial soil factors that affect Cd accumulation in LCACs. Results of the pot culture experiment showed that shoot Cd concentrations under the three Cd treatments significantly varied across cultivars. Two cultivars, Hualv 2 and Huajun 2, were identified as LCACs because their shoot Cd concentrations were lower than 0.2 mg. kg-1 under low Cd treatment and high Cd exposure did not affect the biomass of their shoots. The plot experiment further confirmed the consistency and genotypic stability of the low-Cd- accumulating traits of the two LCACs under various soil conditions. Results also showed that soil phosphorus availability was the most important soil factor in the Cd accumulation of pakchoi, which related negatively not only to Cd uptake by root but also to Cd translocation from root to shoot. The total Cd accumulation and translocation rates were lower in the LCACs than in the high-Cd cultivar, suggesting that Cd accumulation in different cultivars is associated with the Cd uptake by root as well as translocation from root to shoot. This study proves the feasibility of the application of the LCAC strategy in pakchoi cultivation to cope with Cd contamination in agricultural soils.     

A 14-year measurement of toxic elements in atmospheric particulates in Hong Kong from 1995 to 2008

Toxic elements in the atmosphere can enter and accumulate in the human body, seriously impacting human health. In this study, we analyzed a 14-year （1995-2008） measurement of three toxic elements （As, Cd and Cr） in PMlo in Hong Kong, China. The pollution of these toxic elements in Hong Kong was not serious. The trend analysis showed that As and Cr in PM10 increased at a statistically significant level （p〈0.05） during the 14-year period, while the Cd in PM10 did not change significantly. Typical seasonal variations were observed for all three toxic elements, largely in relation to the Asian monsoon. Hourly 10-day backward trajectories were computed and cate- gorised into four groups. The continental air masses showed much higher concentrations of the three toxic elements than the marine air masses. The abundances of As and Cd in the PM10 were much higher in the continental air masses than those in the marine air masses, while the abundances of Cr showed an opposite pattern. The trends of the three toxic elements in East China＇s air mass were consistent with those in the overall data set ofHong Kong. Examination of the toxic element data recorded at urban sites and a roadside site also indicated a large contribution of external air masses to particulate As and Cd in Hong Kong. These results suggest that the long-range transport from the mainland of China is the dominant contributor to particulate As and Cd, while both local and long-distance sources determine the particulate Cr in Hong Kong.     

Quantitative characterization of Cu binding potential of dissolved organic matter （DOM） in sediment from Taihu Lake using multiple techniques

Dissolved organic matter （DOM） plays an important role in heavy metal speciation and distribution in the aquatic environment especially for eutrophic lakes which have higher DOM concentration. Taihu Lake is the third largest freshwater and a high eutrophic lake in the downstream of the Yangtze River, China. In the lake, frequent breakout of algae blooms greatly increased the concentration of different organic matters in the lake sediment. In this study, sediment samples were collected from various part of Taihu Lake to explore the spatial difference in the binding potential of DOM with Cu. The titration experiment was adopted to quantitatively characterize the interaction between Cu（II） and DOM extracted from Taihu Lake sediments using ion selective electrode （ISE） and fluorescence quenching technology. The ISE results showed that the exogenous DOM had higher binding ability than endogenous DOM, and DOM derived from aquatic macrophytes had a higher binding ability than that derived from algae. The fluorescence quenching results indicated that humic substances played a key role in the complexation between DOM and Cu（II） in the lake. However, because of the frequent breakout of algae blooms, protein-like matters are also main component like hnmic matters in Taihu Lake. Therefore, the metals bound by protein-like substances should be caused concern as protein-like substances in DOM were unstable and they will release bound metal when decomposed.     

Variation characteristics of thermal resources in Qinghai-Tibet Plateau in recent 50 years北大核心CSCD

To provide scientific support for the rational development and utilization of thermal resources and avoid climate risks, the distribution of thermal resources in Qinghai-Tibet Plateau in the context of climate change was analyzed in this study. Based on meteorological data from 1961 to 2020 at 149 stations in Qinghai-Tibet Plateau, the changes in thermal resources over the past 50 years were analyzed using inclination rate analysis and Mann-Kendall inspection, combined with JAVA and Python programming. The results showed that: (1) the annual average temperature in Qinghai-Tibet Plateau shows an obvious warming trend, and the temperature increases greatly after the 1990s, with the climate tendency rate from 1961 to 2020 reaching 0.298 ℃/10 a. (2) The accumulated temperature and lasting days steadily above 0 ℃, 5 ℃ and 10 ℃ increased significantly, and the accumulated temperature increases were not entirely determined by the duration of the lasting days. (3) The beginning dates of accumulated temperature steadily above 0 ℃, 5 ℃, and 10 ℃ were generally advanced, while the deadlines were delayed, and the trend of early start dates was stronger than that of deadlines. In conclusion, this study shows that, in the context of global warming, thermal resources in Qinghai-Tibet Plateau have undergone substantial changes, which will play an important role in the introduction and extension of crops. © 2022 Science Press. All rights reserved.     

Genetic diversity and genetic differentiation of Squaliobarbus curriculus from the Pearl River based on mitochondrial D-loop sequences北大核心CSCD

Squaliobarbus curriculus is one of the most economically important edible freshwater fish in the Pearl River. To assess the level of genetic diversity and genetic variation of S. curriculus populations w ithin t he Pearl R iver, samples were collected from six geographical populations from six drainages. 978 base pairs of the D-loop sequence were obtained as a molecular marker. 106 haplotypes were defined among 170 S. curriculus individuals. Populations of S. curriculus in the Pearl River displayed a high haplotypic diversity index (h = 0.9820) and high nucleotide diversity index (π = 0.01353). T he results of genetic distance and genetic differentiation index show that genetic differentiation among S. curriculus populations is not significant. The neighbor-joining tree shows two clades. Clade A is composed of most haplotypes of S. curriculus. Clade B includes two private haplotypes from the Xijiang River. Haplotype network analysis is consistent with the results of genetic distance and genetic differentiation. The results of AMOVA analysis showed that most variation was found within populations (99.36%). Neutral test analysis explained that there was population expansion in the history of S. curriculus in the Pearl River. Xijiang River could be the center of origin, as supported by all the results. © 2018 Science Press. All rights reserved.     

Isolation,identification, and the degradation characteristics of a BDE-47 degrading strain北大核心CSCD

In an effort to remove BDE-47 residues from the environment, a bacterial strain that is capable of utilizing BDE-47 as the sole carbon source was isolated and screened from soil collected from an e-waste recycling area in Tianjin to analyze the degradation properties. The strain was preliminarily identified as Enterobacter sp. according to a 16S rDNA gene sequence analysis. The strain degraded 35.8% of 525 μg/L of BDE-47 in 35 d when the initial concentration of bacteria was 7.1 × 105 cells/ mL. The product of the biodegradation of BDE-47 was BDE-28. The biodegradation of BDE-47 fit well with first-order kinetics, and its degradation kinetics was ln Ct = - 0.104t + 6.22. With the addition of an electron acceptor, such as Fe3+, SO4 2- and NO3 -, the BDE-47 degradation rate was significantly increased to 49.8%, 59.1%, and 67.3%, respectively. The above results revealed that the strain could degrade BDE-47, which is of importance in the application of environmental bioremediation of BDE-47. © 2018 Science Press. All rights reserved.     

MiRNA-451 is a potential biomarker for estrogenicity in mouse uterus

The uterotrophic assay has been commonly used to test environmental estrogens in vivo, however, it is often not sensitive enough sometimes. An alternative way is to evaluate estrogenicity through biomarker genes. MicroRNA （miRNA） is a class of regulatory gene, which has been shown to be a good biomarker for many diseases and toxicological effects in recent years, and some evidences showed that estrogen induced response was partially mediated by miRNAs. In this study, two types of microarrays were used to test the 17[3-estradiol （E2） induced miRNA expression profile at different time points in the immature mouse uterus. Statistical analysis showed the aldehyde slide based array had less variation than the amino slide based array, and 11 dysregulated miRNAs were screened out for significant fold change. Real-time PCR was performed to further confirm that 4 out of 7 selected miRNAs, namely miR-451, miR-155, miR-335- 5p, and miR-365, are E2 regulated miRNAs in the uterus. The function of the predicted targets of these miRNAs is involved in cell grow control, which is consistent with the main E2 function in the uterus. MiR-451 had similar strong responses to E2 in the uterus of both immature and overiectomized mice, and could be a potential biomarker for estrogenicity in the uterus.     

Interspecific association among main plant species in the unstable slope with high-frequency debris flow北大核心CSCD

To determine the characteristics of vegetation community structure and the relationship between species in the frequent watersheds of debris flow in fragile ecological environments, based on sample survey and 2 × 2 joint table techniques, we used analysis of variance test, χ2 test, Jaccard index, Pearson correlation coefficient, and Spearman's rank correlation coefficient test to study the main plant species correlations in the stable zone, instable zone, and deposit zone of the unstable slope. The analysis of variance test showed that all 45 species pairs had a significant negative correlation in the stable zone and instable zone, whereas there was no significant negative correlation in the deposit zone, which showed that the species had an independent distribution trend. The results from the different tests showed that there were 1 pair, 4 pairs, and 4 pairs from the stable zone, instable zone, and deposit zone, respectively, which had significant interspecific association under the χ2 test and the ratios of positive correlation pairs to negative correlation pairs were 0.55, 0.67, and 0.67 in the stable zone, instable zone, and deposit zone, respectively. There were 8 pairs, 5 pairs, and 5 pairs from the stable zone, instable zone, and deposit zone, respectively, which had significant interspecific association from the Pearson correlation analysis test, and the ratios of positive correlation pairs to negative correlation pairs were 0.36, 0.45, and 0.45 in the stable zone, instable zone, and deposit zone, respectively. There were 10 pairs, 6 pairs, and 9 pairs from the stable zone, instable zone, and deposit zone, respectively, which had significant interspecific association from the Spearman's rank correlation analysis test and the ratios of positive correlation pairs to negative correlation pairs were 0.5, 0.55, and 0.6 in the stable zone, instable zone, and deposit zone, respectively. The three test results showed general similarities but there were some differences. Most species pairs did not reach a significant level in the three zones and the number of negatively related species was more than the number of positively related species. In brief, this loose interspecific relationship indicates that the entire plant community was not stable, and the interspecific relationships among species are susceptible to environmental interference in the ecologically fragile areas of the debris flow basin. Therefore, rational selection and configuration of species should be applied to promote community structure development and ecological environmental improvement in vegetation restoration process areas with high-frequency debris flow. © 2018 Science Press. All rights reserved.