A Spatially Explicit Resource-Based Approach for Managing Stream Fishes in Riverscapes

The article describes a riverscape approach based on landscape ecology concepts, which aims at studying the multiscale relationships between the spatial pattern of stream fish habitat patches and processes depending on fish movements. A review of the literature shows that few operational methods are available to study this relationship due to multiple methodological and practical challenges inherent to underwater environments. We illustrated the approach with literature data on a cyprinid species (Barbus barbus) and an actual riverscape of the Seine River, France. We represented the underwater environment of fishes for different discharges using two-dimensional geographic information system-based maps of the resource habitat patches, defined according to activities (feeding, resting, and spawning). To quantify spatial patterns at nested levels (resource habitat patch, daily activities area, subpopulation area), we calculated their composition, configuration, complementation, and connectivity with multiple spatial analysis methods: patch metrics, moving-window analysis, and least cost modeling. The proximity index allowed us to evaluate habitat patches of relatively great value, depending on their spatial context, which contributes to the setting of preservation policies. The methods presented to delimit potential daily activities areas and subpopulation areas showed the potential gaps in the biological connectivity of the reach. These methods provided some space for action in restoration schemes.     

Habitat, Landscape and Bird Composition in Mountain Forest Fragments

The study attempts to separate the effects of forest fragmentation related to landscape (patch area, isolation) and habitat (altitude, vegetation structure) on bird community composition in a mountain pine forest. Bird composition was related, using a multivariate approach (canonical correspondence analyses), to either habitat or to landscape, eliminating the effect of habitat statistically. Bird composition and species richness varied with patch area and isolation from large pine stands, but this effect could be assigned principally to variation in vegetation structure and altitude. Another effect, that of increasing occurrence and numbers of Anthus trivialis with decreasing distance to nearest low-altitude forest, could be assigned to both habitat (grass cover) and landscape (connectivity effects). Management implications are drawn from the results.     

Effects of Increasing Urbanization on the Ecological Integrity of Open Space Preserves

This article analyzes the effects of increasing urbanization on open space preserves within the metropolitan area of Phoenix, Arizona, USA. Time series analysis is used in 10-year increments over 40 years to study urban landscape change. Three landscape metrics—(1) matrix utility (measures intensity of adjacent land uses), (2) isolation (measures distances to other open space patches), and (3) connectivity (measures physical links to other open space patches and corridors)—are used to assess changes in landscape patterns and serve as indicators of urban ecological integrity of the open space preserves. Results show that in the case of both open space preserves, general decline in indicators of urban ecological integrity was evident. The matrix utility analysis demonstrated that increasing intensity of land uses adjacent to preserve is likely to increase edge effects, reducing the habitat value of interior or core habitat areas. Isolation analysis showed that both preserves have experienced increasing isolation from other open space elements over time. Also, connectivity analysis indicated that terrestrial connections to other open space elements have also deteriorated. Conclusions of this research demonstrate that while preservation of natural areas as open space is important in an urban context, intense development of surrounding areas reduces the urban ecological integrity significantly.     

Using Sediment Budgets to Investigate the Pathogen Flux Through Catchments

We demonstrate a materials budget approach to identify the main source areas and fluxes of pathogens through a landscape by using the flux of fine sediments as a proxy for pathogens. Sediment budgets were created for three subcatchment tributaries of the Googong Reservoir in southeastern New South Wales, Australia. Major inputs, sources, stores, and transport zones were estimated using sediment sampling, dam trap efficiency measures, and radionuclide tracing. Particle size analyses were used to quantify the fine-sediment component of the total sediment flux, from which the pathogen flux was inferred by considering the differences between the mobility and transportation of fine sediments and pathogens. Gullies were identified as important sources of fine sediment, and therefore of pathogens, with the pathogen risk compounded when cattle shelter in them during wet periods. The results also indicate that the degree of landscape modification influences both sediment and pathogen mobilization. Farm dams, swampy meadows and glades along drainage paths lower the flux of fine sediment, and therefore pathogens, in this landscape during low-flow periods. However, high-rainfall and high-flow events are likely to transport most of the fine sediment, and therefore pathogen, flux from the Googong landscape to the reservoir. Materials budgets are a repeatable and comparatively low-cost method for investigating the pathogen flux through a landscape.     

Some thoughts on using a landscape framework to address cumulative impacts on wetland food chain support

Problems of using food chain support as a functional attribute of a wetland are discussed. It is suggested that primary production may not be the metric that best evaluates food chain support. Environmental constructs of the wetland and resultant habitat variables appear to yield more information on life-support functions. A landscape-oriented approach is derived to separate hierarchically the wet-lands into ecological regions and landscape elements. This classification scheme allows for predetermination of environmental constraints and the possible natural limits of wetland food chain support. It is proposed that models derived from spatial location theory be used to determine the movement of animals from wetland patches experiencing impacts on food chain support. Patch size, distance between patches, habitat diversity, and environmental constraints are incorporated in these models.     

A Review of Habitat Connectivity Research for Pacific Salmon in Marine,Estuary, and Freshwater Environments

Long‐term conservation planning for diadromous fishes would benefit from a better understanding of both the role of connectivity among environments and habitat variability in the expression of life‐history diversity. Most of the scientific knowledge on habitat fragmentation and connectivity has been developed in terrestrial systems in the discipline of landscape ecology. Research on habitat connectivity in aquatic systems (e.g., salmonid research that spans the spectrum of habitats from freshwater to the sea) is uncommon and largely focused on barriers to fish passage. Here, we present a review of the literature characterizing current research patterns on habitat connectivity within and among environments for Pacific salmon. We found this topic is still incipient: the literature is dominated by studies of freshwaters, with few articles focusing on habitat needs in estuary and marine systems. Pan‐environment studies are rare, pointing to a gap in our understanding of complex habitat relationships that might be significant in the development of long‐term conservation and restoration plans for Pacific salmon, particularly in light of the potential impact of climate change.     

Assessing the Effects of Management Alternatives on Habitat Suitability in a Forested Landscape of Northeastern China

Forest management often has cumulative, long-lasting effects on wildlife habitat suitability and the effects may be impractical to evaluate using landscape-scale field experiments. To understand such effects, we linked a spatially explicit landscape disturbance and succession model (LANDIS) with habitat suitability index (HSI) models to assess the effects of management alternatives on habitat suitability in a forested landscape of northeastern China. LANDIS was applied to simulate future forest landscape changes under four management alternatives (no cutting, clearcutting, selective cutting I and II) over a 200-year horizon. The simulation outputs were linked with HSI models for three wildlife species, the red squirrel (Sciurus vulgaris), the red deer (Cervus elaphus) and the hazel grouse (Bonasa bonasia). These species are chosen because they represent numerous species that have distinct habitat requirements in our study area. We assessed their habitat suitability based on the mean HSI values, which is a measure of the average habitat quality. Our simulation results showed that no one management scenario was the best for all species and various forest management scenarios would lead to conflicting wildlife habitat outcomes. How to choose a scenario is dependent on the trade-off of economical, ecological and social goals. Our modeling effort could provide decision makers with relative comparisons among management scenarios from the perspective of biodiversity conservation. The general simulation results were expected based on our knowledge of forest management and habitat relationships of the species, which confirmed that the coupled modeling approach correctly simulated the assumed relationships between the wildlife, forest composition, age structure, and spatial configuration of habitat. However, several emergent results revealed the unexpected outcomes that a management scenario may lead to.     

A hybrid scheme for comparing the effects of bird diversity conservation approaches on landscape patterns and biodiversity in the Shangan sub-watershed in Taiwan

This work utilizes bird survey data, regression modeling, land-use modeling and landscape metrics to evaluate the effects of various spatial bird diversity conservation approaches on land-use allocation, land-use patterns, and biodiversity in the Shangan sub-watershed in central Taiwan. A survey of the distribution of species revealed that bird species are concentrated in the central and western parts of the sub-watershed. The results obtained using a Shannon-Weaver diversity regression model suggest that diversity of land-use increases the diversity of bird species. Logistic regression results verify that socio-economic factors determine the potential advantages of designating a particular type of land-use in certain parts of the study area. The results of land-use simulation modeling indicate that the eastern and southwestern areas of the sub-watershed will change most frequently between 2007 and 2017. Additionally, increasing the areas to protect bird diversity will effectively increase the patch size, habitat core area, edge effect and habitat connectivity. The Shannon-Weaver diversity regression model shows that protecting bird species diversity in large areas increases bird diversity. The proposed modeling approach is an effective tool that provides useful information for ecological planning and policymaking related to watersheds.     

Prioritizing Stream Barrier Removal to Maximize Connected Aquatic Habitat and Minimize Water Scarcity

Instream barriers, such as dams, culverts, and diversions, alter hydrologic processes and aquatic habitat. Removing uneconomical and aging instream barriers is increasingly used for river restoration. Historically, selection of barrier removal projects used score‐and‐rank techniques, ignoring cumulative change and the spatial structure of stream networks. Likewise, most water supply models prioritize either human water uses or aquatic habitat, failing to incorporate both human and environmental water use benefits. Here, a dual‐objective optimization model identifies barriers to remove that maximize connected aquatic habitat and minimize water scarcity. Aquatic habitat is measured using monthly average streamflow, temperature, channel gradient, and geomorphic condition as indicators of aquatic habitat suitability. Water scarcity costs are minimized using economic penalty functions while a budget constraint specifies the money available to remove barriers. We demonstrate the approach using a case study in Utah's Weber Basin to prioritize removal of instream barriers for Bonneville cutthroat trout, while maintaining human water uses. Removing 54 instream barriers reconnects about 160 km of quality‐weighted habitat and costs approximately US$10 M. After this point, the cost‐effectiveness of removing barriers to connect river habitat decreases. The modeling approach expands barrier removal optimization methods by explicitly including both economic and environmental water uses.     

Modeling Protected Species Habitat and Assigning Risk to Inform Regulatory Decisions

In the United States, environmental regulatory agencies are required to use “best available” scientific information when making decisions on a variety of issues. However, agencies are often hindered by coarse or incomplete data, particularly as it pertains to threatened and endangered species protection. Stakeholders often agree that more resolute and integrated processes for decision-making are desirable. We demonstrate a process that uses species occurrence data for a federally endangered insect (Karner blue butterfly), a readily available habitat modeling tool, and spatially explicit information about an important Michigan commodity (tart cherries). This case study has characteristics of many protected species regulatory decisions in that species occurrence data were sparse and unequally distributed; regulatory decisions (on pesticide use) were required with potentially significant impacts on a viable agricultural industry; and stakeholder relations were diverse, misinformed, and, in some situations, unjustly contentious. Results from our process include a large-scale, empirically derived habitat suitability map for the focal species and a risk ranking of tart cherry orchards with risk based on the likelihood that pesticide applications will influence the focal protected species. Although the majority (77%) of pesticide-influence zones overlapped Karner blue butterfly habitat, risk scores associated with each orchard were low. Through our process we demonstrated that spatially explicit models can help stakeholders visualize and quantify potential protected species effects. In addition, model outputs can serve to guide field activities (e.g., species surveys and implementation of pesticide buffer zones) that help minimize future effects.     

An Integrated Sampling and Analysis Approach for Improved Biodiversity Monitoring

Successful biodiversity conservation requires high quality monitoring data and analyses to ensure scientifically defensible policy, legislation, and management. Although monitoring is a critical component in assessing population status and trends, many governmental and non-governmental organizations struggle to develop and implement effective sampling protocols and statistical analyses because of the magnitude and diversity of species in conservation concern. In this article we describe a practical and sophisticated data collection and analysis framework for developing a comprehensive wildlife monitoring program that includes multi-species inventory techniques and community-level hierarchical modeling. Compared to monitoring many species individually, the multi-species approach allows for improved estimates of individual species occurrences, including rare species, and an increased understanding of the aggregated response of a community to landscape and habitat heterogeneity. We demonstrate the benefits and practicality of this approach to address challenges associated with monitoring in the context of US state agencies that are legislatively required to monitor and protect species in greatest conservation need. We believe this approach will be useful to regional, national, and international organizations interested in assessing the status of both common and rare species.     

A Framework for Landscape Ecological Design of New Patches in the Rural Landscape

This study developed a comprehensive framework to incorporate landscape ecological principles into the landscape planning and design process, with a focus on the design of new patches in the rural landscape. The framework includes two interrelated phases: patch analyst (PA) and patch designer (PD). The patch analyst augments the process of landscape inventory and analysis. It distinguishes nodes (associated with potential habitat patches) from links (associated with corridors and stepping stones between habitats). For natural vegetation patches, characteristics such as size, shape, and spatial arrangement have been used to develop analytical tools that distinguish between nodes and links. The patch designer uses quantitative information and analytical tools to recommend locations, shapes, sizes, and composition of introduced patches. The framework has been applied to the development of a new golf course in the rural Mediterranean landscape of Apulia, Southern Italy. Fifty new patches of Mediterranean maquis (24 patches) and garrigue (26 patches) have been designed and located in the golf course, raising the overall natural vegetation area to 70 ha (60% of total property). The framework has potential for use in a wide variety of landscape planning, design, and management projects.     

Control of landscape diversity by catastrophic disturbance: A theory and a case study of fire in a Canadian boreal forest

A landscape may be envisioned as a space partitioned by a number of ecosystem types, and so it conforms to a neo-Clementsian model of succession. A corollary is that intermediate disturbance rates should maximize landscape (beta) diversity. This was confirmed using eight boreal forest landscapes in northwestern Ontario, Canada, where intermediate rates of forest fire were associated with highest landscape diversity. Because current measures of evenness subsume a richness measure, it is not, as yet, feasible to assess the relative contributions of evenness and richness to biological diversity, and thus it was not possible to determine the roles of numbers of habitat types and relative amounts of habitat types in the above situation. Both theory and observations suggest that forest fire control in fire-prone landscapes increases landscape diversity, but that it is lowered by fire control in landscapes of intermediate to low diversity.     

Landscape Connectivity Shapes the Spread Pattern of the Rice Water Weevil: A Case Study from Zhejiang,China

The spread of invasive species is a complex ecological process that is affected by both the biology of the species and the spatial structure of a landscape. The rice water weevil (Lissorhoptrus oryzophilus Kuschel), a notorious crop pest found in many parts of the world, is one of the most devastating invasive species in China, and has caused enormous economic losses and ecological damage. Little is known, however, as to how habitat and landscape features affect the spatial spread of this pest. Thus, the main goal of this study was to investigate the relationship between the observed spread pattern of L. oryzophilus and landscape structural factors in Zhejiang Province, China between 1993 and 2001. We quantified the invasive spread of the weevil in terms of both the proportion of infected area and spread distance each year as well as landscape structure and connectivity of rice paddies with landscape metrics. Our results showed that the spread of L. oryzophilus took place primarily in the southwest-northeast direction along coastal areas at a speed of about 36 km per year. The composition and spatial arrangement of landscape elements were key determinants of this unique spread pattern. In particular, the connectivity of early rice paddies was crucial for the invasive spread while other factors such as meteorological and geographical conditions may also have been relevant. To control the spread of the pest, we propose four management measures: (1) to implement a landscape-level planning scheme of cropping systems to minimize habitat area and connectivity for the pest, (2) to reduce the source populations at a local scale using integrated control methods, (3) to monitor and report invasive spread in a timely manner, and (4) to strengthen the quarantine system. To be most effective, all four management measures need to be implemented together through an integrated, multi-scaled approach.     

Grassland Fire and Cattle Grazing Regulate Reptile and Amphibian Assembly Among Patches

Fire and grazing are common management schemes of grasslands globally and are potential drivers of reptilian and amphibian (herpetofauna) metacommunity dynamics. Few studies have assessed the impacts of fire and cattle grazing on herpetofauna assemblages in grasslands. A patch-burn grazing study at Osage Prairie, MO, USA in 2011–2012 created landscape patches with treatments of grazing, fire, and such legacies. Response variables were measured before and after the application of treatments, and I used robust-design occupancy modeling to estimate patch occupancy and detection rate within patches, and recolonization and extinction (i.e., dispersal) across patches. I conducted redundancy analysis and a permuted multivariate analysis of variance to determine if patch type and the associated environmental factors explained herpetofauna assemblage. Estimates for reptiles indicate that occupancy was seasonally constant in Control patches (ψ ~ 0.5), but declined to ψ ~ 0.15 in patches following the applications of fire and grazing. Local extinctions for reptiles were higher in patches with fire or light grazing (ε ~ 0.7) compared to the controls. For the riparian herpetofaunal community, patch type and grass height were important predictors of abundance; further, the turtles, lizards, snakes, and adult amphibians used different patch types. The aquatic amphibian community was predicted by watershed and in-stream characteristics, irrespective of fire or grazing. The varying responses from taxonomic groups demonstrate habitat partitioning across multiple patch types undergoing fire, cattle grazing, and legacy effects. Prairies will need an array of patch types to accommodate multiple herpetofauna species.     

Ownership property size,landscape structure,and spatial relationships in the Edwards Plateau of Texas (USA): landscape scale habitat management implications

The present research focused on using spatial analysis to determine relationships among land ownership property sizes and landscape structure, with a focus on conservation management implications. Indices and metrics of ownership property sizes and landscape structure were calculated for 20 km buffer areas around 31 North American Breeding Bird Survey transects, 12 located within the Edwards Plateau ecoregion and 18 in contiguous ecoregions. The number of bird species observed at each transect provided a measure of avian species richness associated with land cover classes for each respective transect (González in Urban influence on diversity of avifauna in the Edwards Plateau of Texas: effect of property sizes on rural landscape structure, Texas A&M University, 2005). Spatial correlations were calculated between each pair of the landscape indices. Spatial analysis identified a “threshold of habitat fragmentation” for the 500 acre (ac) ownership property size. Significant spatial correlations among variables showed that property sizes lower than 500 ac produced habitat fragmentation represented by a decrease in mean patch size (MN) and proximity among habitat patches (Index PROX). Spatial analysis also made possible the prioritization of ecological sub-regions of the Edwards Plateau for conservation or restoration. The Live Oak-Mesquite Savannah showed the highest average ownership property size (7305 ac) and the highest values of patch richness. Based on the results, management in the Live Oak-Mesquite Savannah sub-region should focus on the conservation of land mosaic diversity to assure native avian species turnover (Whittaker 1972). In Balcones Canyon Lands, 64 % of land was covered by farms smaller than 500 ac and the overall average ownership property size was above the threshold of fragmentation (1440 ac), implying that management policies there should focus both on habitat conservation and on restoration. In contrast, 71 % of land in the Lampasas Cut Plains was covered by farms smaller than 500 ac, and average ownership property size was very close to the fragmentation threshold (625 ac). Consequently, the results indicate that management in the Lampasas Cut Plains sub-region should focus on habitat restoration (e.g., corridors that connect isolated habitat patches). In general, the threshold of ownership property size, 500 ac, is important for conservation planning because below that threshold of property size, habitat patch size begins to decrease and the distance between equivalent patches of habitat increases. Isolated patches act as islands within a sea of less suitable habitat which produce negative effects on biodiversity. Identifying the spatial characteristics indicative of habitat fragmentation, or the likelihood thereof, is an important issue for conservation planning in places with urban sprawl influence.     

Ecological Impact Assessment in Data-Poor Systems: A Case Study on Metapopulation Persistence

Legislation on the protection of biodiversity (e.g., European Union Habitat and Bird Directives) increasingly requires ecological impact assessment of human activities. However, knowledge and understanding of relevant ecological processes and species responses to different types of impact are often incomplete. In this paper we demonstrate with a case study how impact assessment can be carried out for situations where data are scarce but some expert knowledge is available. The case study involves two amphibian species, the great crested newt (Triturus cristatus) and the natterjack toad (Bufo calamita) in the nature reserve the Meinweg in the Netherlands, for which plans are being developed to reopen an old railway track called the Iron Rhine. We assess the effects of this railway track and its proposed alternatives (scenarios) on the metapopulation extinction time and the occupancy times of the patches for both species using a discrete-time stochastic metapopulation model. We quantify the model parameters using expert knowledge and extrapolated data. Because of our uncertainty about these parameter values, we perform a Monte Carlo uncertainty analysis. This yields an estimate of the probability distribution of the model predictions and insight into the contribution of each distinguished source of uncertainty to this probability distribution. We show that with a simple metapopulation model and an extensive uncertainty analysis it is possible to detect the least harmful scenario. The ranking of the different scenarios is consistent. Thus, uncertainty analysis can enhance the role of ecological impact assessment in decision making by making explicit to what extent incomplete knowledge affects predictions.     

Understanding the Ecology of Blue Elderberry to Inform Landscape Restoration in Semiarid River Corridors

Societal constraints often limit full process restoration in large river systems, making local rehabilitation activities valuable for regeneration of riparian vegetation. A target of much mitigation and restoration is the federally threatened Valley elderberry longhorn beetle and its sole host plant, blue elderberry, in upper riparian floodplain environments. However, blue elderberry ecology is not well understood and restoration attempts typically have low success rates. We determined broad-scale habitat characteristics of elderberry in altered systems and examined associated plant species composition in remnant habitat. We quantified vegetation community composition in 139 remnant riparian forest patches along the Sacramento River and elderberry stem diameters along this and four adjacent rivers. The greatest proportion of plots containing elderberry was located on higher and older floodplain surfaces and in riparian woodlands dominated by black walnut. Blue elderberry saplings and shrubs with stems <5.0 cm in diameter were rare, suggesting a lack of recruitment. A complex suite of vegetation was associated with blue elderberry, including several invasive species which are potentially outcompeting seedlings for light, water, or other resources. Such lack of recruitment places increased importance on horticultural restoration for the survival of an imperiled species. These findings further indicate a need to ascertain whether intervention is necessary to maintain functional and diverse riparian woodlands, and a need to monitor vegetative species composition over time, especially in relation to flow regulation.     

Safeguarding Wetlands and Their Connections within Wetlandscapes to Improve Conservation Outcomes for Threatened Amphibian Species

Wetlands should not be considered as independent objects but as dynamically connected objects, collectively known as wetlandscapes. We developed a framework that analyzes the influences of wetland suitability and connectivity on amphibian distributions. We defined two indices: a Wetland Suitability Index describing wetland quality and a Movement Permeability Index characterizing wetland connectivity for amphibian population dynamics. These indices were calculated from raster datasets and time‐varying inundation estimates. The indices were used to define a wetlandscape and an amphibian model was used to simulate population dynamics within the wetlandscape. The framework was applied to the Nose Creek watershed, a highly modified wetlandscape in Alberta, Canada. Two amphibian species were selected with different habitat preferences: the Northern Leopard Frog that prefers wet habitats and has high mobility over land, and the Great Plains Toad that prefers terrestrial habitats and has low mobility over land. We found each amphibian species had a “preferred” wetlandscape, reflecting their life cycle traits and migration strategies which in turn were dependent on the hydrological and ecological connections within the wetlandscape. This study highlights the importance of investigating both individual wetlands and the wetlandscape and considering both wetland habitat quality and connectivity as non‐substitutable properties that act jointly, but differently, on population dynamics.     

In search of effective scales for stream management: does agroecoregion,watershed, or their intersection best explain the variance in stream macroinvertebrate communities?

Our lack of understanding of relationships between stream biotic communities and surrounding landscape conditions makes it difficult to determine the spatial scale at which management practices are best assessed. We investigated these relationships in the Minnesota River Basin, which is divided into major watersheds and agroecoregions which are based on soil type, geologic parent material, landscape slope steepness, and climatic factors affecting crop productivity. We collected macroinvertebrate and stream habitat data from 68 tributaries among three major watersheds and two agroecoregions. We tested the effectiveness of the two landscape classification systems (i.e., watershed, agroecoregion) in explaining variance in habitat and macroinvertebrate metrics, and analyzed the relative influence on macroinvertebrates of local habitat versus regional characteristics. Macroinvertebrate community composition was most strongly influenced by local habitat; the variance in habitat conditions was best explained at the scale of intersection of major watershed and agroecoregion (i.e., stream habitat conditions were most homogeneous within the physical regions of intersection of these two landscape classification systems). Our results are consistent with findings of other authors that most variation in macroinvertebrate community data from large agricultural catchments is attributable to local physical conditions. Our results are the first to test the hypothesis and demonstrate that the scale of intersection best explains these variances. The results suggest that management practices adjusted for both watershed and ecoregion characteristics, with the goal of improving physical habitat characteristics of local streams, may lead to better basin-wide water quality conditions and stream biological integrity.