Disease and cell death in white syndrome of Acroporid corals on the Great Barrier Reef

White syndromes (WS) are among the most prevalent coral diseases, and are responsible for reef demise on the Great Barrier Reef. The disease manifests as a clear differentiation between tissue and exposed skeleton and results in rapid tissue loss. Fluorescence in situ hybridisation (FISH) was used in conjunction with histology and transmission electron microscopy (TEM) to investigate bacterial communities and cell death associated with WS. No evidence of bacterial communities or microbial association (using six bacterial probes, TEM and histopathology) was evident within the lesion or adjacent tissues, despite the presence of dense possible secondary invaders in the exposed skeletal regions. Despite widespread reference to necrosis in coral disease literature, there was no evidence of necrosis in any WS lesion or the adjacent tissues in this study. However, in situ end labelling, light microscopy and TEM of WS and healthy coral tissue sections showed evidence of extensive programmed cell death (PCD) exclusively in WS. This study provides the first evidence of intrinsic or PCD as a primary mechanism of cell death in WS, and may provide some explanation for the failure to isolate pathogens from over 80% of identified coral diseases, many of which show similar lesion patterns and WS characteristics.     

Elevated land runoff after European settlement perturbs persistent foraminiferal assemblages on the Great Barrier Reef

Coral reefs are under pressure from a variety of human-induced disturbances, but demonstration of ecosystem changes and identification of stressors are often difficult. We tested whether global change or increased agricultural runoff after European settlement of Northeast Australia (ca. 1860) has affected inshore reefs of the Great Barrier Reef. Eleven sediment cores were retrieved from inner reefs, intermediate reefs, and outer-island reefs, and benthic foraminiferal assemblages were analyzed in dated (14C, 210Pb, 137Cs) core sections (N = 82 samples). Data were grouped into six age bands (< 55, 55-150, 150-500, 500-1000, 1000-1500, and > 1500 yr). Principal component analysis and two-factor (Zone and Age) permutational analysis of variance (PERMANOVA) suggested that assemblages from the three zones were significantly different from each other over several millennia, with symbiont-bearing (mixotrophic) species dominating the outer reefs. A significant interaction term indicated that within-zone patterns varied. Assemblages in outer reefs unaffected from increased land runoff were persistent until present times. In both other zones, assemblages were also persistent until 150 yr ago, suggesting that benthic foraminiferal assemblages are naturally highly persistent over long (> 2000 yr) timescales. Assemblages in core sections < 55 yr old from inner reefs were significantly (post hoc t test) different from those older than 150 yr. Similarly, assemblages < 55 yr old from intermediate reefs were significantly different compared to older assemblages. A multivariate regression tree (environmental variables: Zone and Age) explained 56.8% of the variance in foraminiferal assemblages and confirmed patterns identified by PERMANOVA. With some exceptions, changes on the inner and intermediate reefs were consistent with a model predicting that increased nutrients and higher turbidity enhance relative abundance of heterotrophic species. Given that assemblages did not change in outer-island reefs (not impacted by runoff) we argue that changes in assemblages due to global change can be rejected as an explanation. Thus, the findings are more consistent with the hypothesis that agricultural runoff since European settlement altered foraminiferal assemblages than with the hypothesis that global forcing caused changes.     

Symbiont specificity and bleaching susceptibility among soft corals in the 1998 Great Barrier Reef mass coral bleaching event

Considerable variability in bleaching was observed within and among soft coral taxa in the order Alcyonacea (Octocorallia: Cnidaria) on the central Great Barrier Reef (GBR, latitude 18.2°–19.0°S, longitude 146.4°–147.3°E) during the 1998 mass coral bleaching event. In April 1998, during a period of high sea surface temperatures, tissue samples were taken from bleached and unbleached colonies representative of 17 soft coral genera. The genetic identities of intracellular dinoflagellates (Symbiodinium spp.) in these samples were analyzed using PCR-denaturing gradient gel electrophoresis fingerprinting analysis of the internal transcribed spacer regions 1 and 2. Alcyonaceans from the GBR exhibited a high level of symbiont specificity for Symbiodinium types mostly in clade C. A rare clade D type (D3) was associated only with Clavularia koellikeri, while Nephthea sp. hosted symbionts in clade B (B1n and B36). Homogenous Symbiodinium clade populations were detected in all but one colony. Colonies that appeared bleached possessed symbiont types that were genetically indistinguishable from those in nonbleached conspecifics. These data suggest that parameters other than the resident endosymbionts such as host identity and colony acclimatization are important in determining bleaching susceptibility among soft corals. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Modelling the photosynthetic production by sponges on Davies Reef,Great Barrier Reef

Sponge populations on Australia's Great Barrier Reef (GBR) may contain a mix of both phototrophic and heterotrophic species. The distribution of many of these sponges on reefs is assumed to be determined by light. A model was developed to investigate how the distribution of phototrophic sponges over depth is restricted by the availability of photosynthetically active radiation. Estimates of the balance between photosynthetic production and the total respiratory demand of entire sponge communities on Davies Reef (a middle-shelf reef of the Great Barrier Reef) are provided. These estimates are based upon published data for community composition and biomass, whilst photokinetic parameters have been determined for a variety of sponge species from oxygenexchange measurements. Phototrophic sponges on the fore-reef slope are predicted to exist at or above a state of net 24 h compensation (i.e., photosynthetic oxygen production by sponges balances or exceeds respiration over a 24 h period) to a depth of 30 m. It is proposed that phototrophic sponges are obligate phototrophs because the availability of light for photosynthesis corresponds with the lower depth limit of their distribution. Sponge communities (including both phototrophs and heterotrophs) from the fore-reef and lagoon exist close to a state of net 24 h compensation to a depth of 10 to 15 m. This balance shows diurnal variations, associated with the activity of phototrophs, such that instantaneous compensation of the community may occur to depths of 20 to 25 m when light is maximal.     

The distribution of herbivorous fishes on the Great Barrier Reef

The composition and functionality of ecologically important herbivorous fish assemblages were examined throughout much of Australia’s Great Barrier Reef (GBR). Diversity and abundance of surgeonfishes (Acanthuridae), parrotfishes (Labridae) and rabbitfishes (Siganidae) were strongly associated with position on the continental shelf, whilst effects of latitude were weaker and inconsistent. Species distributions varied considerably amongst taxonomic groups; parrotfishes were mostly widespread whilst distributions of surgeonfishes were often restricted. Most inshore environments supported depauperate herbivore assemblages dominated by different taxa and functional groups compared with assemblages in offshore environments. There were also strong cross-shelf transitions in the main taxa performing each functional role. Overall, this study show that the functional contributions of herbivorous fish assemblages to important ecosystem processes and the contributing taxa vary considerably amongst different GBR environments. Additionally, the two most numerically dominant herbivores actively select detritus, not algae, supporting increasing evidence for the importance of detritus in coral reef ecology.     

Composition of the near-reef zooplankton at Heron Reef,Great Barrier Reef

Using a light trap, zooplankton was sampled at three stations at Heron Reef, Great Barrier Reef: (a) a typical patch reef in the Heron lagoon, (b) a site in 8 m water on the southern slope of Heron reef, and (c) a station approximately 300 m south of (b), in the open water of the channel between Heron and Wistari reefs. Samples were taken at the surface and on the substratum at the lagoon and reef-slope stations, and at 3 to 6 m depth at the open-water station. A total of 114 taxa, many recognized as species, were distinguished in the samples. Pronounced differences existed in abundance, diversity, and taxonomic composition of the samples obtained at different stations. Less pronounced differences existed between surface and substratum samples from the same station. Near-reef samples were more similar to one another than to open-water samples. Decapod larvae, amphipods, and cumaceans were all abundant in near-reef samples and very rare in open-water samples. Forams, isopods, mysids and polychaetes were common in near-reef samples, and rare or absent in open-water samples. Copepods were abundant in all samples but the near-reef samples contained predominantly different species than did samples from the open water. The near-reef fauna included 66 taxa which did not occur in open-water samples. Many of these were epibenthic rather than strictly planktonic in behaviour.     

Synchronous spawnings of 105 scleractinian coral species on the Great Barrier Reef

Following observations of mass spawning of hermatypic corals on the Great Barrier Reef in 1981 and 1982, spawning dates were successfully predicted and documented at five reefs on the Central and Northern Great Barrier Reef in 1983. During the predicted times, 105 species from 36 genera and 11 families were observed to spawn. Of these, 15 species were shown to have an annual gametogenic cycle. All but two of the species observed during mass spawnings shed gametes which underwent external fertilization and development. Synchronous spawning was observed both within and between the five reefs studied, which were separated by as much as 5° of latitude (500 km) or almost a quarter of the length of the Great Barrier Reef. The mass spawning of corals took place on only a few nights of the year, between the full and lastquarter moon in late spring. Maturation of gametes coincided with rapidly rising spring sea temperatures. Lunar and diel cycles may provide cues for the synchronization of gamete release in these species. The hour and night on which the greatest number of species and individuals spawned coincided with low-amplitude tides. Multispecific synchronous spawning, or mass spawning, of scleractinian and some alcyonacean corals represents a phenomenon which is, so far, unique in both marine and terrestrial communities.     

Post-release behaviour of black marlin, Makaira indica, caught off the Great Barrier Reef with sportfishing gear

The post-release behaviour of eight black marlin (Makaira indica), caught by standard sportfishing techniques off the Great Barrier Reef, Australia, was investigated using ultrasonic telemetry. Five marlin between 100 and 420 kg were successfully tracked for periods of 8 to 27 h. Of the three others tagged, one was killed by a shark and two shed their tags, probably as the result of poor attachment. The black marlin spent most of their time within 10 m of the surface, both day and night. During the day, however, they also spent some time between 40 and 140 m depth. They rarely penetrated the thermocline, and then only briefly, remaining at temperatures no more than 8 C° below that of surface waters. The deepest dives were to 178 m. Four of the five marlin tracked, initially moved offshore before heading parallel to the shore, whereas the other marlin stayed close to the reef edge. The average mean swimming speeds over the ground for entire tracks ranged from 0.7 to 1.02 m s⁻¹. Received: 17 January 1997 / Accepted: 16 June 1999     

Cross-shelf distribution of copepods and fish larvae across the central Great Barrier Reef

The distribution of total dry weight of zooplankton, copepod numbers and ichthyoplankton across the outer continental shelf in the central Great Barrier Reef was examined at bi-weekly intervals for three months over summer of 1983. Copepods were sampled (236 m net) within 10 m of the surface and within 10 m of the bottom. Mean densities in surface waters decreased markedly from the mid-shelf to outer shelf and the Coral Sea, but no cross-shelf gradient occurred in the bottom-water. Densities of copepods on the mid-shelf (surface and bottom waters) and in bottom-waters of the outer shelf were typically ca. 400 m^–3. Significantly lower densities (ca. 100 m^–3) occurred in surface waters of the outer shelf, except during outbursts of Acartia australis, when densities in these waters differed little from those elsewhere on the shelf. In oceanic waters, 10 km from the outer shelf station, copepod densities in surface waters were ca. 40 m^–3. Four of the five most abundant copepod taxa in surface waters, Paracalanus spp., Eucalanus crassus, Acrocalanus gracilis and Canthocalanus pauper, tended to be most abundant at the mid-shelf end of the transect. Acartia australis was sporadically very abundant in surface waters of the outer shelf, as was Paracalanus spp. in bottom-water of the outer shelf. An assemblage of Coral Sea species of copepod occurred in bottom-water of the outer shelf during two major intrusions, but not at other times. Densities of all common species varied considerably between cruises. Maximum densities of all common species except A. australis tended to be associated with diatom blooms linked to intrusions but a bloom did not necessarily mean all common species were abundant. Fish larvae included both reef and non-reef taxa, with reef taxa predominating on the outer shelf (approx 2:1 in density of individuals) and non-reef taxa dominating in nearshore samples (approx 2:1). Nine of the ten most abundant taxa analysed showed highly significant variation in numbers among stations and all but one of these also exhibited significant station x cruise interactions. Interactions generally reflected changes in the rank importance of adjacent stations from one cruise to the next or lack of any significant cross-shelf variation on some cruises where overall abundance of the taxa was low.     

The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef

Within the tropics, mangroves and coral reefs represent highly productive biomes. Although these habitats are often within close proximity, the role and importance of mangrove habitats for reef fish species remains unclear. Throughout the Indo-Pacific, reef fish species appear to have few links with estuarine mangrove habitats. In contrast, clear-water non-estuarine mangrove habitats throughout the Caribbean support many reef fish species and may be fundamental for sustaining reef fish populations. But how important are clear-water non-estuarine mangroves for reef fishes within the Indo-Pacific? Using visual surveys during diurnal high tide, the fish assemblages inhabiting clear-water mangrove and adjacent reef habitats of Orpheus Island, Great Barrier Reef, were recorded. Of the 188 species of fishes that were recorded, only 38 were observed to inhabit both habitats. Of these, only eight were observed more than five times within each habitat. These observations provide little indication that the clear-water mangroves are an important habitat for reef fish species. In addition, although based on just a 3-month survey period, we found little evidence to suggest that these areas are important nurseries for reef fish species. The clear-water mangroves of Orpheus Island may, however, provide an additional foraging area for the few reef fish species that were observed to utilize these habitats during high tide. The difference in the importance of clear-water mangroves for reef fishes within this study compared with clear-water mangrove counterparts within the Caribbean is surprising. Although only preliminary, our observations would support suggestions that the patterns reflect the different hydrological characteristics and evolutionary histories of these two biogeographic regions.     

Estimates of adult and juvenile mortality for labrid fishes at One Tree Reef,Great Barrier Reef

Few estimates of natural mortality have been reported for coral reef fishes, yet this information is essential for predicting the effects of recruitment fluctuations on adult populations. In this study, mortality of adult (10 species) and juvenile (11 species) labrid fishes resident on ten isolated patch reefs in One Tree Lagoon, southern Great Barrier Reef, was estimated by visual censuses covering 30 mo, from November 1981 to April 1984. Numbers of adults of all species declined linearly over this period. Mortality rates differed significantly among species, ranging from 4.9 to 69.5% per annum. Average life-span for fishes that had survived the first year of life varied from 1.6 to 11.5 yr, depending on species. Average juvenile mortality varied among species from 25 to 91.8% per annum and was highest for abundant schooling species. Different cohorts of the same species also experienced significantly different rates of mortality. No clear relationship emerged between the number of new recruits and the number of fishes surviving to one year of age. The influence of recruitment fluctuations on adult populations of labrid fishes may be difficult to predict.     

Large-scale spatial variation in epilithic algal matrix cryptofaunal assemblages on the Great Barrier Reef

Spatial variation in the epilithic algal matrix (EAM) cryptofauna was investigated at three locations on the Great Barrier Reef: two inner shelf—Orpheus Island and the Turtle Island group—and a mid-shelf location, Lizard Island. Although the EAM appears to be a relatively simple and consistent habitat, significant differences in cryptofaunal assemblages were found between locations. EAM assemblages from Orpheus Island were markedly different. This appears to be a function of the sediment profile characteristics (grain size >60 µm) at Orpheus Island, as many cryptofaunal taxa displayed positive relationships with sediment volume. However, sediment volumes did not differ significantly between the three locations, highlighting the possibility of cyclonic activity affecting the sediment profile at Orpheus Island in the months preceding the study, in addition to the nutrient input from major terrigenous sources. The results of this study show that EAM cryptofaunal assemblages are not uniform across the Great Barrier Reef and suggest that dissolved nutrients, sediment loads and distance from river systems may be significant drivers of cryptobenthic faunal compositions.     

Zooplankton community structure and water flow in the lee of Helix Reef (Great Barrier Reef, Australia)

To investigate which physical processes contribute most in moulding zooplankton community structure in the waters close to coral reefs, light traps moored in a grid pattern were used to collect zooplankton from the sea surface at 16 stations on the downstream side of Helix Reef during three time periods (2100-2200, 2400-0100, and 0300-0400 hours) over three consecutive nights covering the new moon period in January 1992. Two distinct zooplankton communities were present: a community composed primarily of reef-resident, demersal plankton immediately to the south of the reef in an area of reduced flushing, and a community containing coastal and shelf-seas taxa at the more exposed sites in the open flow field. The fauna composition at a number of exposed stations was as rich as that at sheltered stations both in terms of number of taxa and diversity indices but was almost an order of magnitude less abundant. The reef-resident, demersal plankton community was dominated by gammarid amphipods, mysids, and polychaetes, whereas only transient, meroplanktonic forms such as echinoderm and echinopluteus larvae and shelf-seas, holoplanktonic forms such as doliolids and larvaceans were significantly more abundant in the exposed community. Zooplankton associations were apparently formed by a combination of hydrodynamic processes, spatial and temporal distribution patterns of individual taxa, specific behaviours of certain taxa, and the interactions among taxa at different trophic levels.     

Vertical distribution of fish larvae in the Great Barrier Reef Lagoon,Australia

To investigate the natural defenses of Antarctic marine organisms against exposure to ultraviolet (UV) radiation (280 to 320 nm), 57 species (1 fish, 48 invertebrates, and 8 algae) were collected during austral spring 1988 in the vicinity of Palmer Station (Anvers Island, Antarctic Peninsula) and were analyzed for the presence of mycosporine-like amino acids (MAAs), compounds that absorb UV radiation and may provide shielding from these biologically hazardous wavelengths. Nearly 90% of the 57 species examined contained MAAs, and eight specific MAA compounds were identified. Seven of these (palythine, porphyra-334, shinorine, mycosporineglycine, palythene, asterina-330, and palythinol) have been observed previously in marine organisms from temperate and tropical latitudes. A new MAA, mycosporineglycine: valine, was found in the Antarctic fish and in 38 of the invertebrate species examined. This study confirms widespread occurrence of MAAs in Antarctic marine organisms and suggests that these species have some degree of natural biochemical protection from UV exposure.Contribution No. 502 from the Australian Institute of Marine Science     

Conservation Objectives and Sea‐Surface Temperature Anomalies in the Great Barrier Reef

Abstract: Spatial and temporal dynamics of ecological processes have long been considered important in marine systems, but seldom have conservation objectives been set for them. Climate change makes the consideration of the dynamics of ecological processes in the design of marine protected areas critical. We analyzed sea‐surface temperature (SST) trends and variability in Great Barrier Reef Marine Park (GBRMP) for 25 years and formulated and tested whether three sets of notional conservation objectives were met to illustrate the potential for planning to address climate change. Given mixed and limited evidence that no‐take areas increase resilience to disturbances such as anomalously high temperatures (i.e., temperatures ≥1 °C above weekly mean temperature), our conservation objectives focused on areas less likely to be affected by such events at extents ranging from the entire Great Barrier Reef to the system of no‐take zones and individual no‐take zones. The objective sets were (1) at least 50% of temperature refugia (i.e., pixels that had high‐temperature anomalies <5% or <7% of the time) within no‐take zones, (2) maximum occurrence of high‐temperature anomalies is <10%,< 20%, or <30% of total no‐take area 90% of the time, and (3) coverage of any single no‐take zone by high‐temperature anomalies occurs <5% or <10% of the time. We used satellite imagery from 1985–2009 to measure SST to determine high‐temperature anomalies. SSTs in the Great Barrier Reef increased significantly in some regions, and some of the conservation objectives were met by the park's current zoning plan. Dialogue between conservation scientists and managers is needed to develop appropriate conservation objectives under climate change and strategies to meet them.     

Genetic structure of fissiparous populations of Holothuria (Halodeima) atra on the Great Barrier Reef

Allozyme variation at five polymorphic loci was surveyed in a total of 311 individuals of the sea cucumber Holothuria (Halodeima) atra (Jäger, 1833) collected from two nearshore and two midshelf populations in the Great Barrier Reef in November 1996. Strong deviations in genotype frequencies from those expected under Hardy–Weinberg equilibrium, particularly a large number of heterozygote excesses, confirmed the occurrence of asexual reproduction. Females and males differed significantly in genotype frequencies as a result of differences in either the amount of fission in each sex or in the mortality of asexually produced recruits. The estimated maximum sexual input (number of sexually produced individuals: sample size = N*:N_i) to the two nearshore reefs (38 to 67%) was low relative to that to the two midshelf reefs (74 to 87%). The three ratios and G _o :G _e , N _go :N _i , N*:N _i , (where G _o = observed genotypic diversity, G _e = expected genotypic diversity, N _go = number of genotypes) considered to be indicators of the extent of asexual reproduction, showed a consistent trend in the degree of asexual reproduction similar to that derived from the number of regenerating individuals observed in the populations for which data were available. F-statistic analyses of clonal gene frequencies demonstrated that all populations received sexual recruits from the same gene pool. There was evidence of restricted sexual recruitment to the Fantome population, suggesting that asexual reproduction was dominant only in areas where sexual recruitment was limited by other factors.     

High genetic variability in a population of Tridacna maxima from the Great Barrier Reef

A population of the bivalve mollusk Tridacna maxima (Röding) from Hron Island, Great Barrier Reef, Australia, was studied by gel electrophoresis, and proved to be highly variable genetically, with an average heterozygosity of about 22%. This compares closely with a population of T. maxima from Enewetak (Eniwetok) Atoll, with an average heterozygosity of about 20%, very high for marine organisms. Enewetak Atoll was the site of a series of nuclear tests. The Heron Island study verifies that the high variability is natural, and supports the hypothesis that species from trophically stable environments tend to be highly variable genetically.     

Rates of nitrogen fixation on coral reefs across the continental shelf of the central Great Barrier Reef

This study was undertaken in 1981 to determine whether there were major variations in potential rates of nitrogen fixation on apparently bare coralline substrate from reefs across the continental shelf of the central Great Barrier Reef. Nitrogen fixation, measured as rates of ethylene production (nmol cm^-2h^-1), was significantly lower on substrata from two inner-shelf reefs, (0.46 and 1.07) than on two middle-shelf reefs (2.10 and 2.97) and on two outer-shelf reefs (3.20 and 3.81). By contrast, algal biomass (mg cm^-2) on experimental substrate was significantly higher on inner-shelf reefs (80.8 and 59.4) than on middleshelf (27.1 and 23.8) and outer-shelf reefs (26.4 and 22.4). The rate of nitrogen fixation was positively correlated with the proportion of bare substratum and significantly higher concentrations of dissolved inorganic nitrogen were found in waters over the reefs than in water flowing onto those reefs. The abundance of algal-grazing fishes was reported previously to be significantly lower on inner-shelf reefs. It is suggested that this cross-shelf variation in the activity of algal-grazing fishes may be a determinant of the observed cross-shelf variations in potential nitrogen fixation.Contribution No. 233 from the Australian Institute of Marine Science     

Spatial and temporal variation in coral recruitment on the Great Barrier Reef: Implications for dispersal hypotheses

Over 15 000 coral recruits were counted on settlement plates from three mid-shelf reefs and six fringing reefs in the northern section of the Great Barrier Reef during two summers (1986 and 1987) and one winter (1987). The density of coral recruits on some settlement plates from a fringing reef was up to 4.88 cm^–2, the highest value ever reported. Mean density of recruits was greater on fringing reefs (81.1 recruits/settlement plate) than on mid-shelf reefs (15.6 recruits/settlement plate), but there was greater spatial variation in abundance of recruits between the fringing reef sites. Other differences between the mid-shelf reefs and the fringing reefs were that different taxa were dominant, and that settlement orientation differed, with mid-shelf recruits settling preferentially on horizontally oriented surfaces and fringingreef recruits preferring vertical surfaces. Of the three midshelf reefs, Green Island reef recorded the highest recruitment rate for each of the two summers, despite having a depauperate adult coral population following predation by the asteroidAcanthaster planci. This suggests that coral larvae frequently travel between reefs. In contrast with an earlier study, there was no consistent difference in abundance of recruits between forereef and backreef locations. Overall, the results indicated great spatial variation in the availability of coral larvae, both on the scale of whole reefs and within-reef habitats.