Disturbance-Response Analysis: a Method for Rapid Assessment of the Threat to Species in Disturbed Areas

Abstract:  We developed a method with which to analyze a specie's response to chronic anthropogenic disturbance (CAD). We regressed density of individuals on the intensity of 3 disturbance agents (human activities, raising livestock, and land degradation) along CAD gradients to determine how much CAD is experienced by a species; whether species are ruderal (achieving maximum densities in disturbed sites); whether density declines as a result of CAD; which disturbance agents are responsible for this reduction; and the number of populations that decline as a result of CAD. We tested the method on 9 threatened Mammillaria species (Cactaceae). Seven species were ruderal. In 4 species, actual disturbance surpassed the CAD intensity in which plants achieved their maximum densities; thus, the density of those 4 species appeared to be declining. For 7 species, some populations were threatened by human activities or livestock, whereas others were favored by them. Land degradation negatively affected all species. Our results allowed us to distinguish 4 groups of species that had similar responses and thus may require different forms of management. Our method provided an estimation of the growth rate (λ) of the studied populations that was significantly correlated with λs obtained from demographic studies. The size structures of populations were consistent with the predictions of the analysis, which suggests our results are consistent and reliable. Disturbance–response analysis provides a basis for management in heavily populated areas, where conservation must be achieved along with development activities that cause CAD. The method provides readily interpretable information, which facilitates participative decision making; the data are rapidly generated, which makes it appropriate when results are required promptly or for assessment of large numbers of species; and it provides a comprehensive perception of how threatened species behave in the real world.     

Genetic analysis of Pinus banksiana and Pinus resinosa populations from stressed sites contaminated with metals in Northern Ontario (Canada)

The Sudbury region in Canada is known for the mining and smelting of high-sulphide ores containing nickel, copper, iron and precious metals. Although reports provide information of metal levels in soil and plants, knowledge of genetic effects on plants growing in contaminated areas is limited. The main objective of this study was to characterise the level of genetic diversity in Pinus banksiana and Pinus resinosa populations from the Sudbury (Ontario) region using microsatellite markers. Soil samples were analysed for concentrations of metals. High levels of metal contents in soil were observed within short distances of the smelter compared with control sites. The level of genetic diversity was very low for P. resinosa populations and moderate for P. banksiana samples. Observed heterozygosity was fivefold higher in P. banksiana populations than P. resinosa populations studied. Overall, 17 and 24% of the total genetic diversity were attributed to differences among populations for P. banksiana and P. resinosa, respectively. In general, the inbreeding was significantly higher in P. resinosa populations than P. banksiana populations and gene flows were relatively low in both species. No significant trend of the levels of genetic diversity for metal contaminated and uncontaminated sites was found.     

Genetic, morphological, and chemical divergence in the sponge genus Latrunculia (Porifera: Demospongiae) from New Zealand

We undertook a comprehensive study of Latrunculia in New Zealand to determine the relationship between taxonomic, environmental, and chemical variation within the genus. Sponges were collected from five locations around New Zealand: Three Kings Islands, Tutukaka, Wellington, Kaikoura, and Doubtful Sound. Allozyme electrophoresis at nine polymorphic loci indicated that sponges from each geographic location were genetically distinct, and that they displayed genetic differences of the magnitude usually associated with reproductively isolated species (Nei's D between locations =0.375-2.476). Additionally, the comparisons revealed that the green and brown colour morphs of Latrunculia that are sympatric at Three Kings Islands and Kaikoura are distinct from each other, and that there are two genetic groups within the green sponges in Doubtful Sound. On the basis of genetic data we conclude that there are at least eight species of Latrunculia in New Zealand waters, not one to four as had been previously thought. Morphological comparisons of the eight genetic species based on skeletal characters (i.e. skeletal organisation of the choanosome, spicule composition, size, and geometry) indicated that the eight Latrunculia species fell into only two morphological groups that could be easily diagnosed on the basis of discorhabd type. Within these two primary morphological groups, skeletal characteristics among the eight species largely overlap and are not diagnostic. These findings emphasise the limitations of traditional taxonomic methods based solely on skeletal characters for distinguishing species of Latrunculia. However, multivariate analysis (MANOVA and CDA) based on six measured skeletal variables did reveal significant morphological variation among the species (Pillai's Trace=3.28, F=6.90, P<0.0001), supporting the division of the genus into eight species. Comparisons of chemical extracts from Latrunculia also showed that the amounts of five different bioactive compounds (discorhabdins A, B, C, D, and J) varied predictably among the eight species. This finding suggests that discorhabdin variation within Latrunculia, previously thought to be associated with intra-specific environmental variability, is more likely to reflect differences among species rather than phenotypic plasticity. Our results also highlight the importance of thorough taxonomic studies associated with marine natural products research to understand fully the variation in bioactive properties among individuals. The potential processes underlying the unusually high speciation rates in New Zealand Latrunculia that are indicated in our study are discussed.     

Reproduction of asteroids from Balsfjorden,Northern Norway: Analyses of lipids in the gonads of Ctenodiscus crispatus,Asterias lincki and Pteraster militaris

Seasonal lipid analyses were performed on the gonads and residual bodies of Ctenodiscus crispatus (Retzius) and Asterias lincki (Müller & Troschel), collected from Balsfjorden, northern Norway during March 1978–February 1980. The ovaries of both species had high percentages of total lipid (in the region of 60% of the dry weight) that were relatively constant throughout the season. Testes from both species had in the region of 20% of their dry weight as lipid, again with little seasonal variation. The majority of the total lipid in the ovaries of C. crispatus was accounted for by alkyldiacylglycerols and there was little seasonal variation in lipid class composition. Phospholipid accounted for the bulk of the lipid in the testes of C. crispatus, where alkyldiacylglycerols were present but in minor amounts. A slight degree of seasonal variation occurred in the composition of testis lipid in that maximal percentages of triacylglycerols and alkyldiacylglycerols occurred in January–April. The ovaries of A. lincki contained both triacylglycerols and alkyldiacylglycerols as major neutral lipids. Significant seasonal variation occurred in lipid class composition in the ovaries in that neutral lipids showed transient minima in February–April. The testes of A. lincki had substantial amounts of both triacylglycerols and alkyldiacylglycerols: maximal percentages of these lipids occurred in January–March. Analyses of gonads of near-mature Pteraster militaris (O. F. Müller) revealed that the ovaries were rich in lipid that was predominantly alkyldiacylglycerols, whereas the testes had much lower levels of lipid accounted for mainly by phospholipids. The residual bodies of all three asteroids had significant but small amounts of alkyldiacylglycerols in their lipids. A. lincki had triacylglycerols as a major lipid class in its body lipids, whereas in C. crispatus the major body lipid was phospholipid. Little seasonal variation was seen in the composition of the residual body lipid of either C. crispatus or A. lincki. The results are consistent with an aseasonal reproductive pattern in C. crispatus, although a main breeding activity occurred in mid-winter. A. lincki is a more seasonal breeder, but also had maximal activity in winter. Irrespective of their breeding habits, all three asteroids produced eggs rich in alkyldiacylglycerols. A major role for this lipid in the development of the large lecithotrophic eggs of asteroids is indicated.     

Reproductive biology of <Emphasis Type="Italic">Cosmasterias lurida</Emphasis> (Echinodermata: Asteroidea) an anthropogenically influenced substratum from Golfo Nuevo,Northern Patagonia (Argentina)

The starfish Cosmasterias lurida was sampled from the pier piles of Almirante Storni in the Golfo Nuevo, northern Patagonia, from November 2001 to November 2003. In this anthropogenically modified site there is an unusually abundant food supply of mussels and large aggregations of starfishes. The reproductive cycle was studied by organ indices and histological examination of gonads. The highest gonad index (GI) values were found in the summer (February–March), followed by a drop in GI values, indicating spawning. Histological analyses indicated that gametogenesis takes place from June to January, sexual maturity occurred during the summer and spawning occurred in April. The GI and pyloric caeca index (PCI) tended to have an inverse relationship, but this was only statistically significant in males. However, biochemical analyses of the starfish indicated no transfer of nutrients between pyloric caeca and gonads in either sex. In fact, simultaneous accumulation of carbohydrates was found in the pyloric caeca and gonads of both sexes.     

Devising Appropriate Policies and Instruments in Support of Private Conservation Areas: Lessons Learned from the Klein Karoo,South Africa

Abstract: The amount of privately conserved land is increasing worldwide. The potential of these areas to contribute to the global conservation of biodiversity is significant, given that statutory protected areas alone will not suffice. Nevertheless, there is still inadequate support for private conservation areas, and further research on appropriate, flexible, and generally applicable incentive measures is necessary. We conducted 25 semistructured interviews with the owners of private conservation areas in the Little Karoo, South Africa, to examine landowner opinions of existing conservation policies and their relationships with the local conservation authority. We also assessed landowner preferences regarding conservation incentive measures. Landowners doubted the conservation authority's capacity to implement its stewardship program and were also discouraged by the bureaucracy of the program. The conservation authority was often viewed negatively, except where landowners had experienced personal contact from conservation staff or where strong social capital had formed among landowners. Landowners did not desire financial rewards for their conservation efforts, but sought recognition of their stewardship role and greater involvement from the conservation authority through personal contact. We conclude that conservation policies for private lands could benefit from the provision of extension services to landowners, promotion of formation of groups of landowners and other stakeholders, and public acknowledgment of the contributions private conservation areas make.     

Slow Growth and Lack of Recovery in Overfished Holothurians on the Great Barrier Reef: Evidence from DNA Fingerprints and Repeated Large-Scale Surveys

Abstract:  Commercially fished holothurians have important functions in nutrient recycling, which increases the benthic productivity of coral reef ecosystems. Thus, removal of these animals through fishing may reduce the overall productivity of affected coral reefs. To investigate the potential for recovery of overfished holothurian (  Holothuria nobilis ) stocks on the Great Barrier Reef (GBR), we (1) conducted field surveys on 23 reefs after fishery closure, (2) modeled total virgin biomass and compared it with the total amount fished, and (3) estimated individual growth rates with a DNA fingerprinting technique. Two years after fishery closure, no recovery of H. nobilis stocks on reefs previously open to fishing was observed. Densities on reefs protected from fishing since the onset of the fishery in the mid 1980s remained about four times higher than on fished reefs. Based on density estimates and geographic information system data on the habitat area of each reef, we calculated that the virgin biomass (in the main fished area between 12° and 19°S) was about 5500 t and is now about 2500 t. The reduction is on the same order of magnitude as the total amount fished until 1999 (approximately 2500 t). The DNA analysis of repeated samples on three locations indicated high recapture rates of fingerprinted and released individuals of H. nobilis . Fitting growth curves with Francis's growth function indicated that medium-sized individuals (1 kg) grew 35–533 g /year, whereas large animals (2.5 kg) consistently shrank. Small animals (<500 g) were rarely observed. In combination, these data indicate that production of H. nobilis stocks is very low, presumably with low mortality, low recruitment, and slow individual growth rates. Consistent with anecdotal evidence, recovery of H. nobilis stocks on the GBR may take several decades, and we suggest a highly conservative management plan to protect both the stocks and the ecosystem.     

Genetic structure of camouflage grouper,<Emphasis Type="Italic"> Epinephelus polyphekadion</Emphasis> (Pisces: Serranidae), in the western central Pacific

The objective of the present study was to investigate the population genetic structure of the commercially important camouflage grouper, Epinephelus polyphekadion (Bleeker, 1849), in the western and central Pacific Ocean to improve existing management. Camouflage grouper are widely distributed in the Indo-Pacific and form brief, seasonal, spawning aggregations that are often heavily fished. The present study examined populations sampled in 1997-1998 at five sites in the western central Pacific spanning a geographic distance of ~5,000 km: New Caledonia, Great Barrier Reef, Palau, Marshall Islands, and Pohnpei (Micronesia). Primer pairs were developed to examine genetic variation at three polymorphic microsatellite loci. Cluster analysis, using genetic distance, revealed three regional groupings: (1) Palau, (2) Pohnpei and the Marshall Islands, and (3) the Great Barrier Reef and New Caledonia. Highly significant allele frequency differences were observed among sites. At Pohnpei, significant allele frequency differences in successive years were also apparent, possibly related to genetic variation among cohorts or between local spawning groups. The inter-annual differences at Pohnpei suggest that there may be further genetic structuring over relatively modest distances, a finding relative to determining management units for this commercially valuable species and suggests that future studies need to incorporate possible small-scale temporal or spatial components into study design.     

An annual cycle of steroid hormone concentrations and gonad development in the winter skate,<Emphasis Type="Italic"> Leucoraja ocellata</Emphasis>, from the western Gulf of Maine

The winter skate, Leucoraja ocellata (Mitchill, 1815) is a large oviparous skate that is endemic to inshore waters of the western North Atlantic. The reproductive cycle of this species was characterized in monthly samples taken off the coast of New Hampshire, USA (42°15N; 70°25W), at depths of 9–107 m from November 2000 to October 2001. Plasma concentrations of the sex steroids testosterone (T), 17-estradiol (E₂), and progesterone (P₄) were determined by radioimmunoassay in mature male and female skates. Changes in ovary weight, shell gland weight, and follicle size for 66 female skates were compared to patterns of all three steroid hormones. Beginning in January, ovary weight, shell gland weight, average diameter of the largest follicle, and plasma E₂ increased steadily, culminating in a transient peak in July. This peak was followed by a steady decline in plasma E₂ concentrations, which returned to the lowest values in December. Although T concentrations fluctuated throughout the year, a low concentration in July coincided with a peak in E₂. Skates sampled in September, October, and November had the highest P₄ concentrations, coinciding with the period of egg-case production. For males (n=64), annual cycles of T and E₂ were compared to stages of spermatogenic development. Testosterone concentrations displayed two peaks, one in December/January and the other in July, which were associated with maximum spermatocyst concentration, while E₂ peaks in February, June, and October coincided with maximum spermatocyte concentration. Along with our observations that some reproductive individuals were present throughout the year, these findings suggest that the winter skate has a partially defined reproductive cycle.Electronic Supplementary Material Supplementary material is available in the online version of this article at http://dx.doi.org/10.1007/s00227-003-1264-8.Communicated by J.P. Grassle, New Brunswick     

Assessment of opium-based farming systems: a case study in the Nahom area,Oudomxay Province in Northern Laos

SUMMARY

An interdisciplinary team of 10 completed an exploratory one-month survey of villages in Nahom, Oudomxay Province, Laos, an area representative of upland farming systems based on opium and shifting cultivation. The study included investigation of the physical and socioeconomic environments and assessment of the farming systems. Due to the relatively low population density, there is enough land for villagers to practice shifting cultivation with a one year cultivation cycle, followed by 10–12 years of fallow. The soil degradation commonly caused by shifting cultivation was not significant in this area and the soil fertility is still relatively high. However, most of the original forests had been cut down and used for shifting cultivation and some degradation of the vegetation has occurred, showing that the ecological sustainability has been threatened by prevailing practices. Thirty-six percent of the households had food supply problems for more than three months of each year. The extremely low return for labour from upland rice cultivation, only 5.64 kg per labour-day, was the critical factor that caused the food shortage. Because of poor technique, rice yield from paddy fields was also low, thus shifting cultivators have no enthusiasm to expand their paddy fields. Income from opium provided 80.5% of household income. Opium was extremely tempting to local people due to the very high return for labour, 5700 kip (US$6) per labour-day, low investment, and good labour availability (mostly during the off-season of rice cultivation). However, opium was also a ‘two-edged sword’. It did not bring real wealth, health and happiness but instead brings poverty, poor health and disappointment.     

Genetic diversity in two barnacle species, <Emphasis Type="Italic">Chthamalus stellatus</Emphasis> and <Emphasis Type="Italic">Tesseropora atlantica</Emphasis> (Crustacea,Cirripedia), with different larval dispersal modes in the archipelago of the Azores

ISSRs (Inter Simple Sequence Repeats) were employed to compare the genetic structure of Chthamalus stellatus and Tesseropora atlantica in the Azores. The two barnacles differ as regards life cycle: the former conducting pelagic life for about 22 days, the latter for only 24 h. Thirty individuals of each species were analysed from four locations of three Azorean islands. Five ISSR primers produced, respectively, 117 and 79 polymorphic bands in C. stellatus and T. atlantica. Estimates of among-samples genetic diversity suggested extensive connectivity in the former species and isolation in the latter. AMOVA further supported these results by attributing 2% of genetic variance to the among-islands component of C. stellatus and 30% to T. atlantica. Results are consistent with expectations based on species life history and corroborate the importance of pelagic stages in determining the degree of genetic structuring in benthic marine invertebrates.     

Genetic structure and gene flow of eelgrass <Emphasis Type="Italic">Zostera marina</Emphasis> populations in Tokyo Bay,Japan: implications for their restoration

Massive losses of eelgrass Zostera marina beds in Japan have occurred over the past 100 years. Toward their restoration, transplantation of eelgrass has been attempted in some areas, including Tokyo Bay. This study examined population genetic structures and gene flow in eelgrass in Tokyo Bay to establish guidelines for conducting restoration. Genotypes of a total of 360 individuals from 12 beds were determined using five microsatellite markers. The eelgrass beds in inner bay had above-average genetic diversity. A neighbor-joining tree based on F _ST values among beds revealed that a strong gene flow had occurred among six beds in the inner bay. Genetic assignment testing of drifting shoots indicated that those with seeds migrate in both directions between the inner and outer bay. We suggested that the restoration of eelgrass in the innermost part of Tokyo Bay, where natural habitats have been lost, should be conducted using the inner bay beds.     

Ecological,genetic, and morphological differences among three <Emphasis Type="Italic">Pavona</Emphasis> (Cnidaria: Anthozoa) species from the Pacific coast of Panama

Ecological, genetic, and morphological differences among three Panamanian Pacific Pavona species with strongly developed collines (Pavona varians, P. frondifera, and P. chiriquiensis) were examined. Ecological factors included geographical distributions of species, habitat preferences, interspecific interactions, reproductive ecology, and tolerance to bleaching. Genetic differences were based on the electrophoretic analysis of ten allozyme loci. Morphological analyses consisted of tissue coloration, colony morphology, and measurements and counts of ten macro- and micro-skeletal characters. P. varians, present on reefs or in coral communities, is the most widely distributed and shows considerable morphological variation. P. chiriquiensis, a recently described species, encrusts basalt rock and has little morphological variation. P. frondifera is a reef dweller with a compact foliose morphology. Tissue coloration varies from light to dark brown in P. varians, from pink to brown in P. frondifera, and from brick red to brown or silvery in Pavona chiriquiensis. Also, the white to silvery polyp mouths of the latter species are a diagnostic feature that allows an easy identification in the field. Aggressive dominance during short-term interspecific interactions were as follows: Pavona chiriquiensis>P. varians>P. frondifera. P. chiriquiensis and P. varians showed contrasting responses to sea warming during the 1997-1998 El Niño Southern Oscillation. Whereas entire P. chiriquiensis bleached and died within 4 weeks of exposure to 30-31°C, colonies of P. varians did so only on their upper surfaces. The response of P. frondifera to elevated temperatures was not observed because it is mainly present in the Gulf of Panama where coral bleaching was absent in 1997-1998. The genetic data indicated that P. chiriquiensis differed strongly from both P. varians and P. frondifera, with Nei's unbiased genetic distances of 0.434 and 0.379, respectively. A fixed difference between P. varians and P. frondifera, and P. chiriquiensis exists at the triose phosphate isomerase (TPI-2) locus. A nearly fixed difference between P. chiriquiensis and P. frondifera and between P. chiriquiensis and P. varians was found at the hexokinase (HK) locus. P. varians differed slightly from P. frondifera with Nei's unbiased genetic distance of 0.068. No fixed difference was found between P. varians and P. frondifera. There were strong differences between P. chiriquiensis and P. varians in spawning times and gamete characteristics. Spawning in P. varians and P. chiriquiensis is 12 h out of phase. Also, eggs of the former species are white to beige and positively buoyant whereas those of the latter species are dark green and neutrally to negatively buoyant. No reproductive data are yet available for P. frondifera. Calicular diameters are significantly greater in P. chiriquiensis than in the other two species. In contrast, corallum thickness is greater in P. varians and P. frondifera than in P. chiriquiensis. Canonical discriminant function analysis readily separated the three species.     

Hypo-osmotic regulation coupled with reduced metabolic urea in the dogfish Poroderma africanum: An analysis of serum osmolarity,chloride, and urea

Pyjama sharks (Poroderma africanum) were exposed to a wide range of salinities, over which blood serum was analysed for osmolarity, chloride and urea concentrations. Fish were divided into two groups, those fed twice weekly (high intake), and those fed once a month (low intake). Both groups were exposed to the same salinity range. High intake fish showed the characteristic elasmobranch osmolarity picture, with serum values slightly hyper-osmotic at all times. Low intake fish, however, showed a degree of hypo-osmotic regulation. Serum values for both groups overlapped at very low salinities. Serum urea was also affected by diet, so that again two distinct sets of values were produced, again with overlap at the lower salinities. When previously well-fed fish were starved over a period of one month, serum urea and osmolarity decreased simultaneously. Consequently, it is felt that serum osmolarity is directly related to serum urea levels. Serum chloride was not found to be affected by diet, both groups showing the same change in blood values when exposed to the same change in salinity. It is shown, however, that a reduction in food intake, over a period of more than a fortnight, can reduce metabolic urea to the extent of depressing serum osmolarity and, hence, shift the ionic and osmotic equilibrium between the fish and the sea water. This may result in varying degrees of hypoosmotic regulation.     

Defending young biparentally: female risk-taking with and without a male in the burying beetle, <Emphasis Type="Italic">Nicrophorus pustulatus</Emphasis>

A positive correlation between the parental effort of a male and female should promote stable biparental care. Risk-taking (as assessed by injuries) against infanticidal intruders by Nicrophorus pustulatus females was expected to be low when females had a low probability of successful defense of the young. I tested the hypothesis that when the presence of a male partner increased the probability of successful defense from low to moderate that female risk-taking would increase. Single females and pairs with first instar larvae were confronted by potentially infanticidal male and female conspecific intruders. Male intruders routinely took over nests from unpaired females (30 of 36 trials). Unpaired females and male intruders were injured infrequently, indicating less intense fights despite the high probability of infanticide. A resident female defending against a male intruder was injured more often when paired than unpaired, suggesting greater risk-taking. A male parent that delays desertion, therefore, receives fitness benefits not only from his own defense of the young, but from greater female defense against male intruders as well. It is hypothesized that the threat of infanticidal takeovers by males promotes extended biparental care in burying beetles. When the intruder was female, on the other hand, a female parent on her own had a moderate probability of successfully defending the brood (22 of 36 trials). The presence of a male partner against female intruders almost guaranteed successful defense (35 of 36 trials) and female intruders did not appear to contest pairs vigorously. Against female intruders the presence of a male partner did not significantly change injury rates of the defending female.     

Genetic diversity,clonality and connectivity in the scleractinian coral Pocillopora damicornis: a multi-scale analysis in an insular,fragmented reef system

Clonality and genetic structure of the coral Pocillopora damicornis sensu lato were assessed using five microsatellites in 12 populations from four islands of the Society Archipelago (French Polynesia) sampled in June 2008. The 427 analysed specimens fell into 132 multilocus genotypes (MLGs), suggesting that asexual reproduction plays an important role in the maintenance of these populations. A haploweb analysis of ITS2 sequences of each MLG was consistent with all of them being conspecific. Genetic differentiation was detected both between and within islands, but when a single sample per MLG was included in the analyses, the populations turned out to be nearly panmictic. These observations provide further evidence of the marked variability in reproductive strategies and genetic structure of P. damicornis throughout its geographic range; comparison with results previously obtained for the congeneric species Pocillopora meandrina underlines the importance of life history traits in shaping the genetic structure of coral populations.