Life History as a Predictor of Salamander Recovery Rate from Timber Harvest in Southern Appalachian Forests,U.S.A

Forest management often represents a balance between social, economic, and ecological objectives. In the eastern United States, numerous studies have established that terrestrial salamander populations initially decline in abundance following timber harvest, yet the large‐scale and long‐term consequences are relatively unknown. We used count data from terrestrial survey points to examine the relation between salamander abundance and historic timber harvest while accounting for imperfect detection of individuals. Overall, stream‐ and terrestrial‐breeding salamanders appeared to differ by magnitude of population decline, rate of population recovery, and extent of recolonization from surrounding forest. Specifically, estimated abundance of both species groups was positively associated with stand age and recovery rates were predicted to increase over time for red‐legged salamanders (Plethodon shermani) and decrease in stream‐breeding species. Abundance of stream‐breeding salamanders was predicted to reach a peak by 100 years after timber harvest, and the population growth rate of red‐legged salamanders was predicted to undergo a significant increase 100 years after harvest. Estimated abundance of stream‐breeding salamanders in young forest stands was also negatively associated with the distance to adjacent forest, a result that suggests immigration has a role in the recovery of these species. Our results indicate that salamander abundance in young forest stands may be only modestly lower than in more mature forest but that full recovery from timber harvest may take a substantial amount of time and that species life history may affect patterns of recovery. Historia de Vida como un Vaticinador de la Tasa de Recuperación de una Salamandra a la Colecta de Madera en los Bosques del Sur de los Apalaches, E.U.A     

Conserving spawning stocks through harvest slot limits and no-take protected areas

The key to the conservation of harvested species is the maintenance of reproductive success. Yet for many marine species large, old, individuals are targeted despite their disproportionate contribution to reproduction. We hypothesized that a combination of no-take marine protected areas (MPAs) and harvest slot limits (maximum and minimum size limits) would result in the conservation of large spawning individuals under heavy harvest. We tested this approach under different harvest intensities with a 2-sex, stage-structured metapopulation model for the Caribbean spiny lobster (Panulirus argus). P. argus is intensively harvested in the Caribbean, and in many localities large, mature individuals no longer exist. No-take MPAs and harvest slot limits combined, rebuilt and maintained large mature individuals even under high harvest pressure. The most conservative model (a 30% MPA and harvest slot limit of 75–105 mm) increased spawner abundance by 5.53E¹² compared with the fishing status quo at the end of 30 years. Spawning stock abundance also increased by 2.76–9.56E¹² individuals at a high harvest intensity over 30 years with MPAs alone. Our results demonstrate the potential of MPAs and harvest slot limits for the conservation of large breeding individuals in some marine and freshwater environments. Decisions on which management strategy best suits a fishery, however, requires balancing what is ecologically desirable with what is economically and socially feasible.     

Long-Term Effects of Group-Selection Timber Harvesting on Abundance of Forest Birds

Abstract:  Relatively few studies have examined the ecological effects of group-selection timber harvesting, and nearly all have been short-term and have lacked experimental manipulations that allow pre- and posttreatment comparisons. We have been documenting the effects of a group-selection timber harvest on bird abundance in a Maine forest for 24 years (preharvest, 1983–1987; postharvest, 1988–2006). Here we characterized the trends in bird abundance over the first 20 years of the study in the managed and control halves of the 40-ha study area. Species responses to the group-selection harvest were idiosyncratic, but in general the mature-forest bird community was retained and species dependent on early successional habitat temporarily (≤8 years) benefited. The Eastern Wood-Pewee ( Contopus virens ) , Winter Wren ( Troglodytes troglodytes ) , Pine Warbler ( Dendroica pinus ) , and White-throated Sparrow ( Zonotrichia albicollis ) increased in abundance in the managed half of the study area following timber harvest, whereas the Veery ( Catharus fuscescens ) decreased. The Black-and-White Warbler ( Mniotilta varia ) , Nashville Warbler ( Vermivora ruficapilla ) , and Common Yellowthroat ( Geothlypis trichas ) responded positively to harvesting, as indicated by decreases in abundance in the control area and more protracted declines or stable abundances in the managed area. This study constitutes the longest experimental investigation to date of the effects of a group-selection harvest on birds and thus provides important information on the strength, direction, and duration of temporal changes in bird populations following forest management.     

Evidence for a three-way trade-off between nitrogen and phosphorus competitive abilities and cell size in phytoplankton

Trade-offs among functional traits are essential for explaining community structure and species coexistence. While two-way trade-offs have been investigated in many systems, higher-dimensional trade-offs remain largely hypothetical. Here we demonstrate a three-way trade-off between cell size and competitive abilities for nitrogen and phosphorus in marine and freshwater phytoplankton. At a given cell size, competitive abilities for N and P are negatively correlated, but as cell size increases, competitive ability decreases for both nutrients. The relative importance of the two trade-off axes appears to be environment dependent, suggesting different selective pressures: freshwater phytoplankton separate more along the N vs. P competition axis, and marine phytoplankton separate more along the nutrient competition vs. cell size axis. Our results demonstrate the multidimensional nature of key trade-offs among traits and suggest that such trade-offs may drive species interactions and structure ecological communities.     

Influence of the mineralogical composition on microbial activities in marine sediments: an experimental approach

We investigated the influence of the mineralogical composition of marine sediments on bacterial activity in experimental microcosms. Calcite and quartz were added to natural marine sediments and microbial response in terms of total bacterial abundance and biomass, β-D-glucosidase exo-enzymatic activity and bacterial incorporation of a radio-labelled (³H-leucine) substrate were investigated for a period of one month. We report here that after 15 days the mineralogical composition of the sediment (calcite vs. quartz) had an impact on bacterial abundance and activity (reduced for ca 15% and 56%, respectively). However, such impact was mitigated or even disappeared in high organic nutrient conditions.     

Salmon, wildlife, and wine: marine-derived nutrients in human-dominated ecosystems of central California.

Pacific salmon transfer large quantities of marine-derived nutrients to adjacent forest ecosystems with profound effects on plant and wildlife production. We investigated this process for two highly modified California wine country rivers, one with consistent salmon runs (Mokelumne River) and one without (Calaveras River). Mokelumne River Chinook salmon transported biomass and N comparable to Pacific Northwest salmon streams. Calaveras River levels were much less. Scavenger numbers correlated with salmon carcass counts over time on the Mokelumne River but not the Calaveras River. Likewise, salmon carcasses were consumed significantly faster on the Mokelumne River. Native riparian vegetation as well as cultivated wine grapes adjacent to Mokelumne River spawning sites received 18-25% of foliar N from marine sources, significantly higher than vegetation along the Calaveras River. These data suggest that robust salmon runs continue to provide important ecological services with high economic value, even in impaired watersheds. Loss of Pacific salmon can not only negatively affect stream and riparian ecosystem function, but can also affect local economies where agriculture and salmon streams coexist.     

Influence of the mineralogical composition on microbial activities in marine sediments: an experimental approach

We investigated the influence of the mineralogical composition of marine sediments on bacterial activity in experimental microcosms. Calcite and quartz were added to natural marine sediments and microbial response in terms of total bacterial abundance and biomass, β-D-glucosidase exo-enzymatic activity and bacterial incorporation of a radio-labelled (³H-leucine) substrate were investigated for a period of one month. We report here that after 15 days the mineralogical composition of the sediment (calcite vs. quartz) had an impact on bacterial abundance and activity (reduced for ca 15% and 56%, respectively). However, such impact was mitigated or even disappeared in high organic nutrient conditions.     

全氟化合物的生物富集效应研究进展

研究污染物的生物富集效应,对于预测污染物在生物体内的含量、建立环境标准以及评估污染物的生态风险具有重要的意义。结合近年来国内外报道的有关全氟化合物（PFCs）的生物浓缩因子（BCF）、生物富集因子（BAF）、生物放大因子（BMF）和营养级放大因子（TMF）等参数,对PFCs的生物富集效应及其影响因素进行了综述。研究结果表明,氟代碳原子数高于7的PFCs一般在生物体或食物链（网）上具有生物富集效应,而氟代碳原子数低于7的PFCs的生物富集效应较低。PFCs的理化性质（碳链长度、碳链末端基团类型和是否含有支链等）、生物的种类及其生理生化参数（体长、体重和性别等）和环境条件（生态系统的组成、水温和污染物含量等）等都影响PFCs在生物体内或食物链（网）上的富集。综观当前研究成果,PFCs在食物链（网）上生物放大效应研究主要集中于极地地区海洋食物网,应加强其他区域（特别是典型污染区域）、各种类型食物网（如淡水食物网和陆生食物网）上PFCs的生物富集效应及其影响因素研究,为全面评估PFCs的生态风险提供基础数据。     

Global conservation status of sponges

Sponges are important for maintaining ecosystem function and integrity of marine and freshwater benthic communities worldwide. Despite this, there has been no assessment of their current global conservation status. We assessed their status, accounting for the distribution of research effort; patterns of temporal variation in sponge populations and assemblages; the number of sponges on threatened species lists; and the impact of environmental pressures. Sponge research effort has been variable; marine sponges in the northeastern Atlantic and Mediterranean and freshwater sponges in Europe and North America have received the most attention. Although sponge abundance has increased in some locations since 1990, these were typically on coral reefs, in response to declines in other benthic organisms, and restricted to a few species. Few data were available on temporal trends in freshwater sponge abundance. Despite over 8500 described sponge species, only 20 are on threatened species lists, and all are marine species from the northeastern Atlantic and Mediterranean. Of the 202 studies identified, the effects of temperature, suspended sediment, substratum loss, and microbial pathogens have been studied the most intensively for marine sponges, although responses appear to be variable. There were 20 studies examining environmental impacts on freshwater sponges, and most of these were on temperature and heavy metal contamination. We found that most sponges do not appear to be threatened globally. However, little information is available for most species and more data are needed on the impacts of anthropogenic‐related pressures. This is a critical information gap in understanding sponge conservation status. Estado Global de la Conservación de Esponjas     

Effects of Human Exclusion on Parasitism in Intertidal Food Webs of Central Chile

Abstract:  Numerous ecological studies have demonstrated the dramatic effects that humans have on coastal marine ecosystems. Consequently, marine reserves have been established to preserve biodiversity. Recent reviews show that this strategy has paid off because inside reserves, most species have rapidly increased in size and abundance. Even though these studies focused on free-living organisms and paid little attention to parasite populations, numerous authors support the hypothesis that parasitism levels could be good indicators of ecosystem stability. We examined harvesting effects on the dynamics of a parasitic trematode ( Proctoeces lintoni ) that completes its life cycle in intertidal mussels ( Perumytilus purpuratus ), keyhole limpets ( Fissurella crassa ), and clingfish ( Sicyases sanguineus ). All of these species are directly or indirectly affected by humans. Prevalence and abundance of the trematode P. lintoni in the three host species were compared in four study sites that differed in the intensity of human harvest. Parasitism infection in limpets and mussels was significantly higher in areas protected from human harvesting than in open-access areas, which suggests a significant change in parasite dynamics inside reserves. Yet the average parasitic biomass found in the gonads of F. crassa did not differ between protected and open-access areas. These results show, then, that the parasite system responded by increasing infection rates in marine protected areas without implication for reproductive success of the intermediate host. Our findings show that the indirect effects of harvesting by humans on the embedded parasite communities of littoral ecosystems require further scientific investigation.     

Biochemical composition and early diagenesis of organic matter in coastal sediments of the NW Adriatic Sea influenced by riverine inputs

River inputs influence trophodynamic and biogeochemical processes of adjacent continental shelves. In order to provide new insights on the influence of continental inputs on the benthic trophic state and early diagenesis of sediment organic matter we collected surface sediments in the NW Adriatic Sea at three stations located at increasing distance from the Po River. Sediment samples were collected in four periods characterized by different river outflows and analysed for chloropigment content (chlorophyll-a and phaeopygments), protein, carbohydrate and lipid concentrations, prokaryote abundance and aminopeptidase activity. Sediments of the NW Adriatic Sea displayed high organic loads, tightly coupled with the outflow dynamics of the Po River. A major flooding event was responsible of an enhanced accumulation of organic material on the sea bottom. The resulting increased nutrient load in the sediment impaired organic matter degradation processes. The results of the present study suggest that the enhanced trophic state of marine coastal sediments subjected to riverine inputs are related not only to the increased nutrient inputs, but that they may be amplified by impaired degradation processes.     

Forecasting relative impacts of land use on anadromous fish habitat to guide conservation planning.

Land use change can adversely affect water quality and freshwater ecosystems, yet our ability to predict how systems will respond to different land uses, particularly rural-residential development, is limited by data availability and our understanding of biophysical thresholds. In this study, we use spatially explicit parcel-level data to examine the influence of land use (including urban, rural-residential, and vineyard) on salmon spawning substrate quality in tributaries of the Russian River in California. We develop a land use change model to forecast the probability of losses in high-quality spawning habitat and recommend priority areas for incentive-based land conservation efforts. Ordinal logistic regression results indicate that all three land use types were negatively associated with spawning substrate quality, with urban development having the largest marginal impact. For two reasons, however, forecasted rural-residential and vineyard development have much larger influences on decreasing spawning substrate quality relative to urban development. First, the land use change model estimates 10 times greater land use conversion to both rural-residential and vineyard compared to urban. Second, forecasted urban development is concentrated in the most developed watersheds, which already have poor spawning substrate quality, such that the marginal response to future urban development is less significant. To meet the goals of protecting salmonid spawning habitat and optimizing investments in salmon recovery, we suggest investing in watersheds where future rural-residential development and vineyards threaten high-quality fish habitat, rather than the most developed watersheds, where land values are higher.     

Bridging information domains to improve ecological understanding of biological invasions in a marine ecosystem

We devised a practical method for integrating information on 2 marine invasive species using 3 different approaches: standardized ecological monitoring, online-reporting databases, and surveys of anglers and crabbers. Focusing on 2 recently introduced species with different characteristics, the Asian shore crab (Hemigrapsus sanguineus) and Chinese mitten crab (Eriocheir sinensis), in the Hudson-Raritan watershed of New York and New Jersey, we used sensitivity analyses to explore the relative contribution of each information source to knowledge of species abundance and distribution. All 3 information sources contributed something unique to understanding abundance and distribution of the introduced crabs. Online and survey data on Asian shore crabs significantly affected predictions of abundance, whereas monitoring data did not. When survey data were omitted, abundance estimates were unchanged over time, but when they were included, the model predicted an increased abundance in 2012. All 3 data sets for the Asian shore crab significantly affected estimates of species coverage; surveys had the biggest influence, increasing range size by 4097.25 km². For the catadromous Chinese mitten crab, ecological monitoring data collected in freshwater shortly after the original sighting significantly shaped model estimates for abundance and documented the establishment phase of the mitten crab in an area outside the spatial scope of the surveyed resource users. However, the survey data significantly enlarged mitten crab range-size estimates by 6498.01 km². By demonstrating that data integration produced an image of the invasion process that would not have emerged had we used any 1 method individually, model results provide evidence for the advantages of an interdisciplinary approach.     

Ecological risks of polycyclic aromatic hydrocarbons found in coastal sediments along the northern shores of the Bohai Sea (China)

The total concentrations of 16 United States Environmental Protection Agency (US EPA)-listed polycyclic aromatic hydrocarbons (PAHs) found in coastal and estuarine sediments along the northern shores of the Bohai and Yellow Seas, China, at any study location varied from 0.236 to 8.34 nM g^?1 dry weight (dw). For a given PAH, concentrations varied by one to two orders of magnitude. Ecological risk assessments based on biota–sediment accumulation factors (BSAFs) indicated that the potential ecological hazard of PAHs in the sediments was limited. The average total sediment PAH concentrations were less than the effects range low, indicating that PAHs currently present in the sediments were not harmful to aquatic organisms. The estimated PAH concentration in the aquatic organisms was 0.223 nM g^?1 and posed a limited threat to human health via biological concentration from sediment to harvest of the sea. Assuming no additional PAH inputs, 99% of the 16 PAH molecules currently present in the sediments would be degraded in 40 years.     

Evaluating impacts of forage fish abundance on marine predators

Forage fish—small, low trophic level, pelagic fish such as herrings, sardines, and anchovies—are important prey species in marine ecosystems and also support large commercial fisheries. In many parts of the world, forage fish fisheries are managed using precautionary principles that target catch limits below the maximum sustainable yield. However, there are increasing calls to further limit forage fish catch to safeguard their fish, seabird, and marine mammal predators. The effectiveness of these extra-precautionary regulations, which assume that increasing prey abundance increases predator productivity, are under debate. In this study, we used prey-linked population models to measure the influence of forage fish abundance on the population growth rates of 45 marine predator populations representing 32 fish, seabird, and mammal species from 5 regions around the world. We used simulated data to confirm the ability of the statistical model to accurately detect prey influences under varying levels of influence strength and process variability. Our results indicate that predator productivity was rarely influenced by the abundance of their forage fish prey. Only 6 predator populations (13% of the total) were positively influenced by increasing prey abundance and the model exhibited high power to detect prey influences when they existed. These results suggest that additional limitation of forage fish harvest to levels well below sustainable yields would rarely result in detectable increases in marine predator populations.     

Biogenic disturbance determines invasion success in a subtidal soft-sediment system

Theoretically, disturbance and diversity can influence the success of invasive colonists if (1) resource limitation is a prime determinant of invasion success and (2) disturbance and diversity affect the availability of required resources. However, resource limitation is not of overriding importance in all systems, as exemplified by marine soft sediments, one of Earth's most widespread habitat types. Here, we tested the disturbance-invasion hypothesis in a marine soft-sediment system by altering rates of biogenic disturbance and tracking the natural colonization of plots by invasive species. Levels of sediment disturbance were controlled by manipulating densities of burrowing spatangoid urchins, the dominant biogenic sediment mixers in the system. Colonization success by two invasive species (a gobiid fish and a semelid bivalve) was greatest in plots with sediment disturbance rates < 500 cm(3) x m(-2) x d(-1), at the low end of the experimental disturbance gradient (0 to > 9000 cm(3) x m(-2) x d(-1)). Invasive colonization declined with increasing levels of sediment disturbance, counter to the disturbance-invasion hypothesis. Increased sediment disturbance by the urchins also reduced the richness and diversity of native macrofauna (particularly small, sedentary, surface feeders), though there was no evidence of increased availability of resources with increased disturbance that would have facilitated invasive colonization: sediment food resources (chlorophyll a and organic matter content) did not increase, and space and access to overlying water were not limited (low invertebrate abundance). Thus, our study revealed the importance of biogenic disturbance in promoting invasion resistance in a marine soft-sediment community, providing further evidence of the valuable role of bioturbation in soft-sediment systems (bioturbation also affects carbon processing, nutrient recycling, oxygen dynamics, benthic community structure, and so on.). Bioturbation rates are influenced by the presence and abundance of large burrowing species (like spatangoid urchins). Therefore, mass mortalities of large bioturbators could inflate invasion risk and alter other aspects of ecosystem performance in marine soft-sediment habitats.     

Fatty acid profiles of juvenile salmon indicate prey selection strategies in coastal marine waters

Juvenile salmon exhibit high growth rates upon their arrival into the marine environment. Dietary changes from freshwater and estuarine habitats to those derived from the marine environment may play an important role in ultimate adult survival. We measured the total lipid and fatty acid (FA) composition of juvenile Chinook salmon (Oncorhynchus tshawytscha), coho salmon (O. kisutch), and 18 of their potential prey items sampled from coastal waters during their first few months at sea. Coho salmon had significant reductions in their lipid content (% wet weight) between May and June, likely due to early marine growth. We did not find a significant drop between May and June Chinook salmon lipid content, which may indicate an earlier ontogenetic selection to marine prey that are higher in lipids and essential fatty acids (EFAs). Juvenile salmon ate prey of both high and low lipids. Significant FA compositional changes occurred for both coho and Chinook salmon between May and June. In May, the FA profile of juvenile salmon, especially coho salmon, did not resemble their prey items; however, in June, there was a strong correlation between salmon and their common fish prey as determined by gut content analysis. Significant increases in the level of EFAs, especially docosahexaenoic acid (DHA, 22:6n-3) accounted for the majority of the monthly differences in salmon tissue FA composition. In order for juvenile salmon to adequately meet their physiological requirements, they may have adapted to select advantageous prey with higher levels of EFAs, especially DHA, in order to rapidly increase their growth and ultimate survival.     

Simulated Responses of a Forest-Interior Bird Population to Forest Management Options in Central Hardwood Forests of the United States

I used estimates of carrying capacity, survival, fecundity, and edge effects to simulate the responses of a forest-interior bird population to selection cutting clearcutting, and no timber harvest. I also modeled population sensitivity to changes in fecundity, survival, K , and edge relationships. Because model parameters are based on scant data, results should he regarded as hypotheses to be further investigated or measures of the relative impact or sensitivity (given model assumptions). Simulated population size was greater with no timber harvest than with clearcutting and greater with clearcutting than with group selection when edge effects were included in the model. Without edge effects, population levels were only slightly lower under group selection than under no timber harvest, and greater than clearcutting. Edge effects had only a small impact on population levels under clearcutting. Clearcut size did not have much effect on population levels, but longer and shorter rotation ages resulted in higher and lower population levels, respectively. The model was very sensitive to declines in mean fecundity and survival, suggesting that factors affecting mean demographic rates could be more important than local edge effects. Some methods of timber harvest may be compatible with the conservation of forest-interior birds, but better demographic data and information on habitat suitability of selectively cut forests and young even-aged stands is needed to adequately evaluate management options.     

A model of the emergence of infectious pancreatic necrosis virus in Scottish salmon farms 1996–2003

Infectious pancreatic necrosis virus (IPNV) is an increasingly common pathogen in farmed Scottish Atlantic salmon; over 80% of marine sites are now infected, although most do not suffer clinical disease. The increasing prevalence of this pathogen in farms over the period 1996–2003 is modelled using a simple susceptible–infected (SI) epidemic model. Because salmon production approximately doubled over this period, population-dependent and -independent transmission models are compared. The model generates mean R₀ (increase ratio) of 1.41 in fresh and 1.45 in marine water farms at the national level; higher values apply with time under population-dependent transmission (1.58, freshwater, 1.80 marine by 2003). Regional differences in R₀ are mostly moderate, indicating similar regional processes in spite of substantial difference in prevalence. Prevalence of IPNV for marine sites was further increased by the use of smolts (young salmon) from multiple freshwater sources. The model suggests that prevalence is entering dynamic equilibrium and will stabilise or only increase slowly as population increases. Cutting freshwater transmission is the most effective single strategy at reducing IPNV prevalence, but a combination of strategies (including reducing the number of sources of smolts) is better and indeed is required for eradication. Eradication would require cuts in transmission of at least 30–45% and this is unlikely to be practicable.     

Habitat saturation drives thresholds in stream subsidies

Understanding how abundance regulates the effects of organisms on their ecosystems remains a critical goal of ecology, especially for understanding inter-ecosystem transfers of energy and nutrients. Here we examined how territoriality and nest-digging by anadromous salmon mediate trophic subsidies to stream fishes. Salmon eggs become available for consumption primarily by the digging of salmon that superimpose their nests on previous nests. An individual-based model of spawning salmon predicted that territoriality and habitat saturation produce a nonlinear effect of salmon density on numbers of available eggs to resident predators. Field studies in Alaskan streams found that higher densities of salmon produce disproportionately more eggs in stream drift and in diets of resident fishes (Arctic grayling and rainbow trout). Bioenergetics model simulations indicated that these subsidies produce substantially enhanced growth rates of trout. These results demonstrate that small changes in salmon abundance can drive large changes in subsidies to stream food webs. Thus, the ecological consequences of population declines of keystone species, such as salmon, will be exacerbated when behavior generates nonlinear impacts.