Identification and expression analysis of the HvENOD93 gene family in barley北大核心CSCD

早期结瘤素93(ENOD93)蛋白在植物根瘤形成初期扮演着重要的角色.基于大麦基因组信息鉴定大麦ENOD93基因家族成员,分析其理化特性、进化关系、基因结构、蛋白质结构和启动子顺式作用元件;并分析ENOD93家族在不同组织和不同基因型(籽粒大小)的表达情况.结果显示,大麦ENOD93基因家族有16个成员,均含有ENOD93基因家族特有的保守结构域;编码区长度在207-627 bp之间,外显子数量有1-4个,平均2.75个,且大部分位于细胞膜上;进化树结果表明与水稻、小麦和玉米等禾本科植物ENOD93基因的亲缘关系较近;启动子顺式元件主要有植物生长发育响应元件、胁迫响应元件以及激素响应元件;大部分HvENOD93基因在灌浆期籽粒和大粒材料中表达量较高.推测大麦HvENOD93基因在籽粒大小形成中起关键性作用;另外,结合其他物种相关基因研究结果,共筛选出3个同源基因.(图4表2参45)     

Identification and expression of the COI1 gene family in Camellia sinensis and its expression in oolong tea processing北大核心CSCD

茉莉酸受体蛋白COI1(coronatine insensitive 1)是茉莉酸信号转导途径的重要组成部分,为鉴定分析茶树茉莉酸受体COI1基因家族,预测其潜在的分子功能,了解茉莉酸受体COI1基因在乌龙茶加工中应答胁迫的分子机制,利用生物信息学方法对茶树茉莉酸受体COI1进行家族成员鉴定,氨基酸序列、结构域、基因结构、进化分析以及启动子顺式元件分析,结合实时荧光定量分析CsCOI1基因在乌龙茶加工中的表达.结果显示,茶树茉莉酸受体CsCOI1家族有两个成员,均含有F-box和富亮氨酸重复序列(LRRs)两个结构域;单子叶、双子叶的COI1蛋白各聚一支,且与蜜柑进化关系较近;茶树COI1基因家族两个成员均含有3个内含子,启动子顺势元件主要有胁迫响应元件、激素响应元件以及光响应元件;转录组数据说明茶树CsCOI1基因具有较强的组织表达差异性.实时荧光定量分析表明,CsCOI1a基因在室内萎凋后表达显著上调,且15 min、30 min日光萎凋后CsCOI1b基因的表达水平显著上调,同时茉莉酸含量发生显著变化.本研究推测CsCOI1基因可能通过茉莉酸信号转导途径参与乌龙茶加工中萎凋的胁迫响应过程,该结果可为乌龙茶加工品质调控奠定基础.(图8表2参30)     

Genome-wide identification and hormone expression patterns of the MaPIF family of banana genes北大核心CSCD

植物光敏色素作用因子(phytochrome interacting factor,PIF)是广泛分布于植物体内的一种转录因子,在植物的生长发育方面有着重要的作用.基于香蕉基因组数据,对香蕉MaPIF基因家族进行基因组鉴定,采用生物信息学分析方法对其进行命名,分析理化性质、蛋白质结构、基因结构、启动子顺势作用元件以及构建系统进化树;分析PIF家族在不同激素处理下的表达情况.结果显示,香蕉MaPIF家族有7个成员,均含有高度保守的bHLH结构域;编码区长度在1 116-2001bp之间,至少包含5个内含子,且大部分位于细胞外;进化树结果可以发现与拟南芥、水稻以及玉米PIF的亲缘关系较近;顺式作用元件预测结果显示,MaPIF上存在多种与激素和光相关的响应元件.qRT-PCR结果显示,MaPIF3-1、MaPIF4、MaPIF4-1在生长素(IAA)、赤霉素(GA)、生长素抑制剂(NPA)处理中均有显著表达,除此之外,所有成员在脱落酸(ABA)处理下均有明显表达.本研究表明MaPIF在香蕉生长发育中激素调控有重要作用.(图7表3参45)     

Volatile components and their corresponding synthetic gene expression profile in the fruits of Actinidia chinensis北大核心CSCD

This study aimed to identify the difference in volatile aromatic components and the relationship with the expression pattern of their corresponding bio-synthesis genes in six kiwifruit (Actinidia chinensis) varieties (Cuiyu, Jintao, Jinyan, Chuhong, Donghong, and Xixuan). To provide a foundation for kiwifruit variety recognition, fruit quality evaluation, and molecular-assisted breeding, the volatile aromatic components in the ripe fruits of six kiwifruit varieties were evaluated by head space-solid phase micro extraction/gas chromatography-mass spectrometry. The aroma-synthesis-related genes, including acyltransferases (AcAT16), lipoxygenase (AcLox2), and terpene synthase genes (AcTPS1), were detected by the real time-quantitative polymerase chain reaction (qPCR) during the postharvest stage of fruits. Ninety-two aroma chemicals were identified in the tested kiwifruit cultivars. There were 35, 32, 30, 44, 28, and 17 of aromatic compounds in Cuiyu, Jintao, Jinyan, Chuhong, Donghong, and Xixuan, respectively. Esters were the main aroma components in Cuiyu, Jintao, and Jinyan. The major aromatic compounds of Chuhong, Donghong, and Xixuan were aldehydes and terpenoids. The expression level of AcATs16 and AcLox2 increased, and then decreased during the ripening of kiwifruit fruits. The expression of AcATs16 was significantly higher in Cuiyu and Jinyan than in other varieties. AcLox2 indicated significant abundance in Cuiyu and Chuhong. AcTPS1 was up-regulated in Jintao, Donghong, and Xixuan with fruit ripening; however, this was not observed in Cuiyu, Chuhong, and Jinyan. The difference in the composition and content of volatile aromatic components contributes to the difference in aroma in different kiwifruit cultivars. The diverse expression of AcATs16, AcLox2, and AcTPS1 might be closely related to the synthesis of ethyl butyrate, (E)-2-hexenal, and eucalyptol, respectively. © 2018 Science Press. All rights reserved.     

Cloning and expression analysis of ScBAK1 gene and its alternative spliceosome in sugarcane北大核心CSCD

Alternative splicing (AS) is an important part of regulation of eukaryotic gene expression. BAK1 (Brassinosteroid insensitive1-associated receptor kinase 1) is a specific type of plant serine/threonine protein kinases, and can regulate growth and development and natural immunization. To reveal the responses of sugarcane BAK1 gene to the adverse environment, a ScBAK1 gene and its alternative spliceosome, termed ScBAK1 (GenBank accession number: KP032226) and ScBAK1 S1 (GenBank accession number: KP032227), were cloned from leaf cDNA of Yacheng 05-179 utilizing the methods of electronic cloning and RT-PCR. The open reading frame (ORF) length of ScBAK1/ScBAK1 S1 gene was 1 860bp/1 770bp, encoding 619/589 amino acids residues. The predicted molecular weight of the protein was 69.28 kDa/ 65.76 kDa. Both proteins were located in plasma membrane, estimated as acid, hydrophikic and secretive proteins. Random coil and alpha helix gave priority to extended strand in their secondary structure without beta turn. The most important protein function was cell envelope, secondly biosynthesis of amino acids and cofactors. Real-time quantitative PCR analysis revealed that the expression of sugarcane ScBAK1 S1 gene exhibited the reduced expression trend under smut fungus stress and various abiotic exogenous stresses, including SA, CuCl2, PEG, ABA, NaCl and JA, while the expression of ScBAK1 gene was induced by SA, CuCl2, PEG, NaCl and smut fungus stresses. The phenomenon showed that the absent sequences or amounts of ScBAK1 S1 gene plays a key role in the response of ScBAK1 to the stress of sugarcane smut fungus, osmotic stress and cell growth. The differential expression of ScBAK1 and ScBAK1 S1 lays a foundation for further research on the function of ScBAK1 gene under biotic and abiotic stress.     

Cloning and expression analysis of geosmin synthase gene from Aphanizomenon gracile北大核心CSCD

Geosmin is a secondary metabolite responsible for earthy odors. The occurrence of geosmin has great impact on the quality of water environment. The gene essential for geosmin biosynthesis have been identified in several species. But little is known about the mechanism of geosmin synthesis in Aphanizomenon gracile. This study attempted to clone the gene involved in geosmin biosynthesis of Aphanizomenon gracile a nd a nalyze t he geosmin production u nder d ifferent e nvironments. T he high-efficiency thermal asymmetric interlaced PCR (hiTAIL-PCR) was used to amplify the full-length of geosmin synthase gene from Aphanizomenon gracile (WH-1). Real time PCR (RT-PCR) was applied to quantify the geosmin production in different light and temperature. As a result, geo, a geosmin synthase gene from Aphanizomenon gracile (WH-1) was cloned by hiTAIL-PCR. The full-length open reading frame (ORF) of geo was 2 262 bp, coding for a protein of 753 amino acids. Meanwhile, WH-1 was treated with different environment conditions and mRNA expression levels of geo were quantified by RT-PCR. It was found that low temperature (15 °C), high light intensity (35 μmol m-2 s-1) and continuous light illumination were beneficial to the expression of geo. The successful amplification of geosmin synthase gene verified that hiTAIL-PCR is an effective and simple procedure of low cost. The result provides fundamental knowledge on the monitoring and prevention for odorants.     

Comparison of zooplankton community of different areas in Changjiang River estuary北大核心CSCD

To compare the zooplankton communities in the South Branch, North Branch, North Channel and offshore of the Changjiang (Yangtze River) estuary, two cruises were carried out in the autumn of 2009 and the spring of 2010. A total of 27 species of zooplankton were identified in the spring, including 17 in the offshore, 11 in the south branch, 9 in the north branch, and only 5 in the North Channel. In autumn, altogether 71 species were collected, including 6 in the south branch, 11 in the north branch, 8 species in the North Channel area and 63 in the offshore. Either in the spring or autumn, the average species numbers of the offshore were the highest. Additionally, species numbers of the offshore were significantly higher than that in other areas (P < 0.05) for both seasons. There were no significant differences between the species number of the South Branch and the North Branch (P > 0.05). The species number and diversity index of the inner area were lower than that of the offshore. The average diversity index of offshore area was still the highest in both spring (1.69) and autumn (3.73). In spring, the diversity index of the North Channel was the lowest among four areas, while in autumn, that of the South Branch was the lowest (0.49). In spring, Sinocalanus sinensis was the dominant species of the South Branch, North'Branch and North Channel (> 50% of the total collection by number). The dominant species of offshore area were Tortanus vermiculus and Labidocera euchaeta. While in autumn, the dominant species were different for each area. In the South Branch, the most important species was S. dorrii (93.55% of the total collection by number). The main species was S. dorrii in the South Branch area, S. stenellus and T. vermiculusin in the North Branch and Subeucalanus subcrassus in the offshore (< 30% of the total collection by number). Numbers of species and diversity index seemed to vary among different areas of Changjiang estuary. The underline mechanisms of the regional variation in species number were mainly the salinity and suspended sediment concentrations. Generally speaking, zooplankton was more abundant in the polyhaline water. Diversity index was largely affected by both species number and abundance percentage. The zooplankton community was mainly influenced by the Changjiang diluted water and offshore water mass through affecting the salinity. In autumn, the Kuroshio flowed northward carrying polyhaline water, and brought subtropical species to the offshore of the Changjiang estuary. Since the North Channel is located in the estuarine turbidity zone, suspended sediment concentration of that area is higher than the other areas, which might limit the distribution of some species. To sum up, salinity is the most important factor causing the difference of zooplankton community among different areas in the Changjiang estuary. Besides, water masses and estuarine turbidity also influence the zooplankton community.     

Effects of different concentrations of tetracycline and oxytetracycline on the growth and ecotoxicity in lettuce北大核心CSCD

四环素类抗生素(TCs)是目前我国应用广泛、用量最大的一类抗生素,畜禽粪便和土壤中存在TCs残留,影响蔬菜作物的生长发育. TCs因水溶性较高更容易被植物转运和积累,植物对TCs耐受性机理研究仍不足.为更全面探究土壤TCs对蔬菜的毒性作用,研究不同浓度四环素(TC)和土霉素(OTC)分别对生菜的抗生素残留、生长特征及抗氧化酶系统的影响.结果显示,在0(对照)、2、10、50、250 mg/kg 5个施用水平下,生菜叶片抗生素含量逐渐增加,且土霉素含量始终大于四环素含量.与对照相比,抗生素浓度在50 mg/kg以上时对生菜生长具有显著抑制作用,其中,株高、根长、地上部和地下部鲜重与叶片TC残留量具显著负相关.生菜叶片的脯氨酸含量随浓度增加呈先增加后降低的趋势,在10 mg/kg时达到最大.并且低浓度(2 mg/kg)促进抗氧化酶基因SOD、POD21和CAT的表达,高浓度抗生素(50、250 mg/kg)对其产生抑制作用,10 mg/kg的抗生素处理对SOD、POD21和CAT基因表达的影响在抗生素种类上存在差异.本研究表明抗生素浓度超过50 mg/kg对生菜生长产生抑制作用,脯氨酸和抗氧化酶SOD、POD、CAT的转录水平及其酶活性能快速响应抗生素胁迫,可作为生菜对抗生素抗性的辅助评价指标.(图8表3参19)     

Effect of different pearling times on the quality of hull-less barley rice北大核心CSCD

Hull-less barley is a special food crop rich in various nutrients in Qinghai-Tibet Plateau. Six-pearling is often used to produce commercial hull-less barley rice in order to improve its rough taste and inferior cooking quality. This study evaluated the differences in the nutritional, cooking, sensory, and storage qualities of hull-less barley rice with different pearling times to obtain suitable processing conditions for the production of high-quality hull-less barley rice. With increasing pearling time, the contents of vitamin B6, vitamin E, dietary fiber, iron, zinc, phenols, and flavonoids significantly decreased to a large extent, protein and vitamin B3 decreased slightly, the contents of total starch and β-glucan increased significantly, and γ-aminobutyric acid (GABA) initially increased and then decreased. The peak, trough, and final viscosity of whole grain barley were 1 860.50 cP, 914.50 cP, and 2 150.00 cP, respectively, and increased after six-pearling to 4 219.00 cP, 2 628.00 cP, and 5 074.00 cP, respectively. At the same time, the water absorption and volume expansion of the pearled hull-less barley increased significantly. The hardness of pearled hull-less barley reduced from 4 708.50 g to 2 282.00 g, its adhesiveness increased from 0.00 to -7.33, and its taste and sensory quality exhibited better. The activities of α-amylase, polyphenol oxidase, lipase, and catalase in pearled hull-less barley slightly decreased. Hull-less bran flour is rich in a variety of nutritional components and could be a potential resource with great developmental value. In general, hull-less barley rice obtained from three-pearling has high nutritional value, high cooking quality, low enzyme activity, and low energy consumption; therefore, it can be used to produce high-quality barley rice. This study provides important information for high-quality pearled hull-less barley and further utilization of barley bran flour. © 2022 Science Press. All rights reserved.     

Changes in CO2 flux for different recovery processes of desertification in the alpine meadows of Northwest Sichuan北大核心CSCD

Desertification has emerged as a serious threat to the alpine meadows of Northwest Sichuan in recent decades. Artificial vegetation had certain effects on desertification recovery, while how the CO2 flux changed and its reasons are still unclear. During the growing season in 2016 (i.e., from July to September), we selected the desertified alpine meadows with different recovery degrees, including the early stage of restoration, the middle stage of restoration, the late stage of restoration, and control (the unrecovered desertification meadow) as four transects. CO2 flux was measured by the instrument LI-8100, and the microenvironment factors that affected CO2 flux changes were analyzed. The results showed that the carbon sequestration function of desertified alpine meadows gradually increased with the degree of recovery. Net ecosystem exchange (NEE) were -1.61, -3.55, and -4.38 μmol m-2 s-1 in the early, mid-term, and late transects, respectively, and the most dramatic changes occurred from the early stage to mid-term stage, increasing by 120.50%. Both ecosystem respiration (ER) and soil respiration (SR) were enhanced significantly with restoration (P < 0.05). In mid or late July, NEE, ER, and SR reached their maximum values, and thereafter, the indicators varied to near zero (P < 0.05). During the whole growing season, the daily dynamic in CO2 flux for the control alpine meadow was mild and retained the trend of continuous release all day, but that in the desertified alpine meadow was a single peak pattern. Moreover, with restoration process, the peak of CO2 flux increased and reached a peak in the late stage of the recovery process. The regression analysis showed that there was a significant positive correlation between CO2 flux and vegetation coverage, aboveground biomass, and soil moisture (0-5 cm) (P < 0.01), and a weak correlation with 0-5-cm soil temperature (P < 0.01). This indicates that topsoil moisture (5 cm) is a more significant factor for CO2 flux than topsoil temperature during the growing season in the restoration of desertified alpine meadows in Northwest Sichuan. In general, the vegetation recovery significantly improved the carbon-sequestration ability of the desertified alpine meadows during the growing season in Northwest Sichuan, and at the middle stage of restoration, the carbon-sequestration ability improved significantly due to vegetation restoration and increase in topsoil (0-5 cm) moisture. © 2018 Science Press. All rights reserved.     

Stoichiometric characteristics of carbon,nitrogen, and phosphorus in leaf litter soil of Pinus yunnanensis forest during different restoration stages in the karst plateau of eastern Yunnan北大核心CSCD

以滇东岩溶坡地不同恢复阶段云南松林(纯林、人工混交林、天然次生林)为研究对象,以元江栲原生林和小铁仔灌丛作为参照样地,对5种植被类型中的叶片-枯落物-土壤中的C、N、P含量和化学计量比特征进行研究.结果表明:(1)3种云南松林都呈现为高C(432.27 g/kg)、低N(10.28 g/kg)、P(0.96 g/kg)的格局,5种植被类型的叶片-枯落物-土壤C、N、P含量基本都表现为叶片>枯落物>土壤,C/N、C/P、N/P值则都表现为枯落物>叶片>土壤,叶片和枯落物的养分含量和化学计量比值与土壤间差异显著.(2)3种云南松林对于养分的吸收同化能力差异不大,但天然次生林的枯落物质量最好,人工混交林的土壤N、P有效性最高,云南松林内受N的胁迫作用强于原生林和灌丛.(3)植物叶片-枯落物-土壤中C、N、P及其化学计量比间相关性显著,互馈机制明显.研究区内土壤C、N、P化学计量特征受土壤pH、团聚体颗粒、含水率、容重和硝态氮影响显著.因此,滇东岩溶高原云南松植被恢复过程中主要受N胁迫作用,提高枯落物养分回流是云南松植被恢复与经营的关键要素.(图4表3参41)     

Photosynthetic characteristics and reproductive strategies of Polygonum viviparum at different altitudes in the Qilian Mountains北大核心CSCD

Polygonum viviparum, which reproduces sexually and asexually, is widely distributed in the Qinghai-Tibet Plateau, and its reproduction strategies are very sensitive to changes in the environment. This study aimed to elucidate the effect of altitude on the photosynthetic characteristics and reproductive strategies of P. viviparum. This study was conducted to investigate the responses of photosynthetic, vegetative, and reproductive traits of P. viviparum populations along six altitudinal gradients in the eastern part of the Qilian Mountains in China. Our results indicated that, with increasing altitude, the net photosynthetic rate of P. viviparum showed an increasing trend, reaching its maximum value (14.39 μmol m–2 s–1) at 3 700 m above sea level. The transpiration rate showed an increasing trend, followed by a decreasing trend, and the intercellular CO2 concentration did not differ significantly between altitudes. With increasing altitude, the plant height and leaf area of P. viviparum showed a downward trend, the aboveground and underground biomass decreased, and the specific leaf area initially decreased and then increased. However, the leaf greenness index showed an upward trend, and the number of stomata in the upper and lower epidermis of leaves initially increased and then decreased. With increasing altitude, the proportion of inflorescence length per plant (the ratio of inflorescence length to plant height), the proportion of bulbil length per inflorescence (the ratio of bulbil length to inflorescence height), and the proportion of the number of bulbils per inflorescence (the ratio of the number of bulbils to the total number of flowers and bulbils) showed an increasing trend. Air temperature and light intensity are the major environmental factors affecting the photosynthetic characteristics and functional traits of P. viviparum. Thus, P. viviparum is exposed to more environmental stresses and obtains less energy when altitude increases, but it adapts to the harsh alpine environment by increasing the photosynthetic capability per unit area. With increasing altitude, P. viviparum populations may be sustained by investing less energy in vegetation and more in reproduction, especially asexual reproduction. © 2022 Science Press. All rights reserved.     

Geostatistical analysis on the spatial pattern of Pinus tabulaeformis population at different habitats in the Lingkong Mountain北大核心CSCD

In order to reveal the distribution pattern and spatial correlation of Pinus tabulaeformis population, this research used geostatistical theory and methods to examine the distribution pattern and spatial correlation of P. tabulaeformis population in different habitats of the Lingkong Mountain. The results showed that the semivariograms well fitted the exponential model for P. tabulaeformis populations at the mountain ridge, and the spherical model for those in slow slopes and valley areas. All three populations showed aggregated pattern. The spatial heterogeneity of the habitats of ridge, slow slope and valley was mostly due to the spatial autocorrelation in the ranges of 11.16 m, 9.99 m and 4.74 m, respectively. The populations at the ridges and gentle slopes showed greater sill values and determinant coefficient but lower fractal dimension than the pines in valleys, indicating that the first two habitats are characterized by higher degree of spatial heterogeneity and more significant spatial patterns, which is not found in the valley populations. Therefore the variations in the spatial distribution patterns of P. tabulaeformis populations is likely resulted from both the intrinsic biological characteristics and the environmental factors.     

Nutrient utilization by Casuarina equisetifolia plantation of different ages in the tropical coastal area of South China北大核心CSCD

Casuarina equisetifolia plantation plays a key role in protecting coastal areas from hazardous climate. However, the plantations in the tropical coastal area of south China have degraded severely in recent years. This research aimed to investigate the nutrient status of the plantation ecosystem along a chronological sequence. The results showed that different parts of the Casuarina equisetifolia had very similar level of Carbon (C), 448-462 g kg-1 in the branch and trunk, 416-430 g kg-1 in the leaf and shed leaf, 320-391 g kg-1 in the fine root. Carbon content did not vary with the plantation age. High fine root biomass did not definitely lead to high soil carbon stock. Casuarina equisetifolia had Nitrogen (N) content of 9.9-11.9 g kg-1, with the highest N found in the leaf and fine root. The Phosphorus (P) content was in the order of leaf > fine root > trunk. The plantation in fast growth period of age 6 had the lowest N and P. The soil of 3-year plantation had the highest P content among the 4 age classes, which also resulted in the highest soil C and N content in plantation of 3 years among all. However, the C and N stock of the sandy soil was extremely low compared to normal soil of the region. Soil N was weakly correlated with leaf N, but soil P not correlated with leaf P. Except for the obvious dynamics of C/N and C/P ratios in the leaf, which showed a peak in 6-year plantations, the C/N and C/P ratios of different organs did not change with the plantation age. Casuarina equisetifolia retranslocated nutrients from aging leaf at a rate of 18-30% for N and 43-58% for P. The nutrient resorption efficiency was not correlated with nutrient level in either soil or plant. In summary, Casuarina equisetifolia has low level of nutrient status. The plantation growth is limited by N and P in young period, but by P in relatively older period.