Inhibition of decomposing leaf litter of Cinnamomum camphora on growth of Pharbitis nil and the alleviation effect of nitrogen application北大核心CSCD

In plant configuration of landscaping, herbaceous plant is often inter-planted with ornamental tree species. But unreasonable plant collocation may reduce the effectiveness of afforestation for the inhibition effect of tree on the growth of understory, and further more affect the greening effect. Camphor (Cinnamomum camphora) is widely planted in landscaping accompanying herbaceous plants including morning glory (Pharbitis nil). But camphor was reported to have allelopathic effect on its adjacent plant, therefore correct selection and collocation of plants has important significance to obtain good greening effect. This research aimed to study by a pot experiment the effects of decomposing leaf litter of Cinnamomum camphora on the growth, phenological traits of Pharbitis nil, as well as modification of these effects by nitrogen application. Three application rates of C. camphora leaf litter including 25, 50 and 100 g/pot (denoted by L25, L50 and L100, respectively) and a control (CK) were implemented. Nitrogen application began on the 34th d of decomposition, with 0.39 g urea being divided into three equal portions and added continuously to each pot. The results showed that (1) The height, basal diameter, leaf area and biomass production of Pharbitis nil were all inhibited sharply by exposure to the leaf litter, being decreased by 32.85%-83.78%, 5.23%-23.00%, 30.31%-58.47%, and 40.34%-84.54%, respectively, with the inhibition effect increasing both in intensity and stability with the increase of leaf litter. Such inhibition effect was obviously alleviated by exogenous nitrogen application. (2) The flowering dynamics of Pharbitis nil was greatly impacted by the leaf litter, with the flower initiation 2.5-10.0 d later and the flowering duration 6.3-11.4 d longer compared to the control. Although the leaf litter-treated plants exhibited more (0.5-3.3) flowers than the control, their quality decreased, and the hundred-grain weight of the seed decreased with the increase of leaf litter. However, the differences among treatments in the reproductive parameters mentioned above reduced after nitrogen fertilization. The results indicated that leaf litter of C. Camphora has a great allelopathic effect on morphological and reproductive growth of Pharbitis nil, which may be attributed to the release of phototoxic substances during the decomposition process.     

Isolation,identification, and the degradation characteristics of a thiobencarb-degrading bacterium Bacillus sp. T2北大核心CSCD

Thiobencarb, a thiocarbamate herbicide, is widely used to control weeds in rice paddies. Screening for highly efficient thiobencarb-degrading bacteria is important for the bioremediation of thiobencarb-contaminated environments. The aim of this study was to isolate and identify highly efficient thiobencarb-degrading bacteria and to identify the degradation pathway and the degrading properties. The thiobencarb-degrading strain was isolated using methods of microbiological acclimation and enrichment and was then identified using a 16S rRNA phylogenetic analysis. The degrading properties of the isolated bacterium were determined by single-factor experiments, and the degradation products were identified using gas chromatography-mass spectrometry (GC-MS). A thiobencarb-degrading strain T2, which can utilize thiobencarb as the sole source of carbon for energy and growth, was isolated from paddy soil. Strain T2 degraded more than 98.3% of 0.4 mmol/L of thiobencarb within 36 h. It was preliminarily identified as Bacillus sp. T2 according to the 16S rRNA gene analysis and from its morphological, physiological, and biochemical characteristics. The metabolic products of the thiobencarb degradation for strain T2 were identified as 4-chlorobenzyl mercaptan, 4-chlorobenzaldehyde, and 4-chlorobenzoic acid by the GC-MS. Based on metabolite identification, it was speculated that thiobencarb degradation in strain T2 was initiated by the hydrolysis of the thioester bond to produce 4-chlorobenzyl mercaptan, which was further oxidized to 4-chlorobenzaldehyde and 4-chlorobenzoic acid. The thiobencarb degradation that was initiated by the hydrolysis of the thioester bond by strain T2 is a new metabolic pathway, which provides valuable research material and reliable experimental data for revealing the metabolic process and mechanism of thiobencarb microbial degradation in soil. The strain Bacillus sp. T2 has a very high degradation efficiency, suggesting it is a good prospect for microbial remediation in thiobencarb-polluted environments. © 2018 Science Press. All rights reserved.     

Growth promotion and disease prevention effects of streptomyces on Amorphophallus konjac K. Koch ex N.E.Br北大核心CSCD

This study aimed to evaluate the disease antagonism and seed growth promotion effects of streptomyces on Amorphophallus konjac by agar block and axenic fermentation extract experiments. Pot experiments were taken to assess relative biocontrol effiency and effect of streptomyce preparation M (mixture of S. carnosus and S. pactum in solid-state fermentation with 1:1 ratio) on biomass, photosynthetic rate, yield and corm quality of A. konjac K. Koch ex N.E.Br. Results showed that: 1 Streptomyces Act12 had obvious antagonistic activity against six soft rot pathogens, and the diameter of growth inhibition zones ranged from 19.4 to 31.6 mm. Fermentation filtrate of streptomyces exhibited growth-promoting activity on melon seed germination and seedling growth. 2 Streptomyce-derived viable preparations had biocontrol effect on A. konjac regarding soft rot-disease prevention. In the pot experiment, individual inoculation of preparations achieved 65.0% relative biocontrol effect on A. konjac during the harvest stage. After 10 and 20 days of inoculation combined with Pectobacterium chrysanthemi (a bacterial pathogen), the relative biocontrol effiency of streptomyces were 100.0% and 58.4%, respectively. 3 Streptomyces showed obvious growth-promoting effect on growth and yield of A. konjac. In the pot experiment, combined inoculation of streptomyces and Pectobacterium chrysanthemi significantly increased the petiole diameter by 11.1%, net photosynthetic rate by 111.7%, fresh weight of corm by 54.8%, fresh weight of rhizome by 304.2%, and the number of rhizomes by 200.0%, compared with individual inoculation of Pectobacterium chrysanthemi. 4 Individual inoculation with streptomyces improved corm quality of A. konjac. The contents of glucomannan, starch and cellulose significantly increased by 14.0%, 8.1% and 27.7%, respectively compared with control (P < 0.05) . This study indicates that streptomyces promotes the growth of A. konjac, enhances the yield and the content of glucomannan, and at the same time helps disease prevention of A. konjac.     

Effects of glucose dehydrogenase gene knock-out in Acetobacter sp. On the metabolism of carbon sources and the synthesis of 3-hydroxypropionic acid北大核心CSCD

3-Hydroxypropionic acid (3-HP) is an emerging platform chemical with a high added-value. Resting cells of Acetobacter sp. can efficiently catalyze 1,3-propanediol (1,3-PDO) to 3-HP. Glucose is oxidized by the membrane-bound dehydrogenase, resulting in an acidic environment that inhibits cell growth and reduces the biomass. We deleted the gdh gene for glucose dehydrogenase (GDH), and investigated the effects on cell growth, carbon metabolism, and 3-HP production. The gdh gene knocked-out showed a 1.72-fold increase in biomass in the mixed medium containing glucose and glycerol. A carbon flux analysis showed that glucose was converted to gluconic acid by GDH, followed by an oxidation to 2-ketogluconic acid. In addition, a small percentage of the gluconic acid was degraded via the pentose phosphate pathway. Glycerol was phosphorylated and entered the central pathway (gluconeogenesis). Results indicate that the deletion of gdh can effectively promote higher cell densities and improve the catalytic performance for the production of 3-HP, and thus provide a theoretical reference for improving the carbon source utilization and the catalytic performance of acetic acid bacteria. © 2018 Science Press. All rights reserved.     

Effects of long-term nitrogen addition and precipitation changes on CH4 flux in an alpine steppe北大核心CSCD

土壤是甲烷(CH4)重要的源和汇.氮沉降和降水格局变化正在急剧改变土壤碳循环,进而可能对土壤CH4通量造成深刻影响.高寒生态系统是巨大的碳库,对氮沉降和降水变化十分敏感.然而,目前多数研究集中在短期实验上,缺乏对长期氮沉降和降水变化背景下CH4通量的响应及其调控因素的认识.以青藏高原高寒草原为研究对象,在2013年搭建模拟氮沉降和降水格局改变实验平台.基于静态箱–气相色谱法测定2020年生长季(5-10月)土壤CH4通量.结果显示,高寒草原土壤呈CH4的汇.氮添加没有显著改变生长季和植物生长高峰CH4通量.然而,降水变化显著改变了生长季和植物生长高峰CH4通量,其中降水增加(+50%降水)降低了CH4的吸收(分别为–16%和–45%),降水减少(–50%降水)增强了CH4的吸收(分别为+73%和+33%).进一步研究发现,与植物属性和功能基因丰度相比,土壤环境因子主导了CH4通量变化(解释率>90%).其中CH4通量与土壤含水量和温度显著正相关,与土壤pH显著负相关.综上所述,在未来全球变化情景下,降水格局改变更能调节青藏高原高寒草原CH4通量的变化.(图6表1参37)     

Identification of two alkane hydroxylases involved in long-chain n-alkane degradation by Dietzia sp. DQ12-45-1b北大核心CSCD

The aim of this study was to identify genes involved in long-chain alkane degradation in Dietzia sp. DQ12-45-1b. Functional genes were annotated by genome analysis. Induction of alkane hydroxylase genes by C28 n-alkane was analyzed by using quantitative real-time PCR in wild-type Dietzia sp. DQ12-45-1b and its alkW1 gene knockout mutant strain M 5-5. From the genome of Dietzia sp. DQ12-45-1b, two homologues, G1 and G2 genes were annotated, which showed 50% amino acid sequence similarity with AlmA from Acinetobacter sp. DSM17874, and 48% amino acid sequence similarity with LadA from Geobacillus thermodenitrificans NG80-2, respectively. In addition, G1 showed 71% amino acid sequence similarity with G1a, and G2 showed 34% and 87% amino acid sequence similarities with G2a and G2ß, respectively, which were annotated from Dietzia sp. E1 genome. In addition, the alkW1 gene knockout strain M 5-5 could grow with C28 n-alkane as the sole carbon source, indicating the presence of potential long-chain alkane hydroxylase gene(s) other than alkW1 in Diezia sp. DQ12-45-1b. Accordingly, induction of G1 and G2 genes was observed when Dietzia ap. DQ12-45-1b and alkW1 knockout mutant strain M 5-5 grew with C28 n-alkane as sole carbon source. The results indicated that G1 and G2 genes are mostly responsible for the degradation of long-chain alkanes in Dietzia sp. DQ12-45-1b, which has unique multiple alkane hydroxylase systems.     

Interspecific and intraspecific identification of Dendrobium based on the psbAtrnH intergenic region sequences and the 5S rRNA gene spacer sequences北大核心CSCD

This research aimed to investigate the interspecific and intraspecific identification of Dendrobium by using the multi-locus method so as to provide a molecular basis for Dendrobium identification through the combination of chloroplast psbA-trnH intergenic region sequences and ribosome 5S rRNA gene spacer sequences. PCR direct sequencing was applied to detect the chloroplast psbA-trnH intergenic region sequences as well as the ribosome 5S rRNA gene spacer sequences of 12 Dendrobium species, while the psbA-trnH intergenic region sequences of Dendrobium denneanum dq-2 variety and dq- 5line were cloned and sequenced for single nucleotide polymorphism (SNP) analyzing. The sequences were analyzed by the software Sequencher4.14, Bioedit7.0, MEGA5.2 and Dansp5.0; the interspecific and intraspecific Kimara-2-Parameter(K2P) distances were also calculated. The phylogenetic tree (using Neighbor joining method) was constructed with Bulbophyllum odoratissimum and Bletilla striata as outgroup. The results showed an average length of chloroplast psbA-trnH gene sequences in Dendrobium as 742.3 bp, with 72 variable sites, including 33 information sites; the average length of the ribosome 5S rRNA gene spacer sequences in Dendrobium was 336.4 bp, with 213 variable sites including 139 information sites. Using psbAtrnH intergenic region sequences in combination with ribosome 5S rRNA gene spacer sequences can not only identify D. denneanum, D. hancockil, D. thysiflorum, D. devonianum, D. moniliforme, D. chrysotoxum, D. officinale, D. heterocarpum and D. nobile, but also differentiate D. officinale from different geographical populations, and distinguish the dq-2 variety and dq 5line with SNP in the multi locus of D. denneanum.