Microbial activities in a permanently stratified estuary. I. Primary production and sulfate reduction

Physical, chemical and biological parameters have been measured in the water column of Saelenvann, a shallow estuary in western Norway, over a period of nearly 4 years. Due to the presence of a permanent pycnocline, a layer of anoxic water with high sulfide and ammonia concentrations persists under a layer of oxic water with normal photosynthetic and heterotrophic microbial activities. The magnitude of the sulfate reduction in the estuary was correlated with the magnitude of primary productivity. Increases in sulfate reduction following increased primary productivity occurred first in the free anoxic water, and only after an appreciable time lag in the upper sediment layers. The highest rates of sulfate reduction were found just below the interface with the oxic water and in the upper few centimeters of the sediment. It is estimated that twice as much sulfate is reduced in the free water mass as in the sediment. During the summer, the amount of organic material produced by primary productivity exceeds the amount of organic material mineralized by sulfate reduction, the inverse being the case during the winter.     

Composition of the fish fauna of a permanently open estuary on the southern coast of Australia,and comparisons with a nearby seasonally closed estuary

The fish faunas of the outer basin (Nornalup Inlet), inner basin (Walpole Inlet) and saline region of the main tributary (Frankland River) of the permanently open Nornalup-Walpole Estuary on the southern coast of Western Australia, were sampled bimonthly for a year using seine and gill nets, and also during a further two months by the former method. Although the Nornalup-Walpole Estuary is permanently open, the catches of fish in its shallows were dominated (98.4%) by estuarine-spawning species, thereby paralleling the situation in the nearby and seasonally closed Wilson Inlet. In contrast, larger representatives of several marine species were present in appreciable numbers in the offshore, deeper waters of both of these estuaries. The delayed recruitment of marine species into these estuaries apparently reflects the distance that the juveniles of these species have to travel from the areas where they are believed predominantly to spawn. The larger representatives of marine species made a greater contribution to the fish faunas of the offshore, deeper waters in the Nornalup-Walpole Estuary than in Wilson Inlet (64.5 vs 36.9%) and, unlike the situation in the latter estuary, they included five species of elasmobranchs, two of which (Mustelus antarcticus and Myliobatis australis) were relatively abundant. Classification and ordination of the combined data for both estuaries demonstrated that the composition of the fish fauna in the offshore, deeper waters of the outer basin of the Nornalup-Walpole Estuary was particularly distinct, with some marine species being restricted to these waters. This is presumably related both to the presence of a permanently open entrance channel and the relatively deep waters found in Nornalup Inlet, which allow the ready exchange of water between the sea and estuary and the maintenance of high salinities in the deeper regions of the outer basin for much of the year. The fish faunas in Walpole Inlet and the tributaries of both the Nornalup-Walpole Estuary and Wilson Inlet were more similar to each other than they were to those in the more seawards end of either estuary. This similarity reflects the apparent preference of certain teleosts, such as the estuarine species Acanthopagrus butcheri and the marine species Mugil cephalus and Aldrichetta forsteri for reduced salinities and/or features associated with riverine environments.     

Microbial biomass at land water interface and its role in regulating ecosystem properties of a fresh water dry tropical woodland lake

This study was aimed at determining microbial biomass at land water interface and the role it plays in regulating ecosystem properties of a fresh water dry tropical woodland lake. Four microbial variables namely biomass-C (Cmic), fumigated CO2-C, substrate induced respiration (SIR) and basal respiration (BR) were measured in humus samples collected from land water interface over a period of one year Microbial biomass (Cmic) was maximum during February (718 micorg CO2-C g(-1)). Similar was the case of fumigated CO2-C (560 microg CO2-C g(-1) 10 d(-1)), SIR (2900 microg CO2-C g(-1)) and BR (480 microg CO2-C g(-1)). Humus-N appeared maximum (1.60%) during November and phenolics (204 microg g(-1)) during December Gross primary productivity (GPP) was found maximum (3.30 g Cm(-2)d(-1)) during March. Almost similar trend appeared for chlorophyll and phytoplankton density. Variation in microbial biomass at land water interface can be explained by seasonality and the quality of substrate material. Asynchrony in the peaks of microbial variables with phytoplankton pulsation and GPP suggested that the microbial biomass through nutrient mineralization regulates ecosystem functioning of a fresh water woodland lake. This has relevance for evaluating the nature of anthropogenic perturbations and for maintenance of fresh water lakes void of human disturbances.     

Microbial activities as a function of water depth in the Ligurian Sea: an autoradiographic study

Fourteen species of sergestid shrimps were collected in the Sargasso Sea between the surface and 1500 m near Bermuda on 4 cruises. The vertical distribution and feeding activity of the most abundant species are discussed in relation to interspecific competition and the adaptive significance of vertical migration. Each species lives within a narrow depth range and exhibits a diel vertical migration. Sergestes splendens migrated as much as 825 m, while S. japonicus migrated less than 100 m. Neither the seasonal nor permanent thermocline influenced the migration range. The only species which occurred together both day and night were S. pectinatus with S. vigilax and S. pectinatus with S. sargassi. Morphological differences in the third maxillipeds of these species suggest differences in feeding. Although most species eat a variety of organisms, the foreguts of S. grandis, S. corniculum, and S. splendens contained euphausiids more often than those of other species, and S. grandis and S. robustus fed more frequently on fishes. In contrast, S. japonicus appears to feed on detritus. Food was found in the foreguts of most species less frequently during the day than night, but no species fed only at night. S. sargassi and S. pectinatus fed equally day and night.     

Microbial associations in sponges. II. Numerical analysis of sponge and water bacterial populations

Three taxonomically distant sponges Pericharax heteroraphis, Jaspis stellifera and Neofibularia irata contain phenotypically similar bacterial symbionts which differ from bacteria in the ambient water. These symbionts are predominant in the sponges and were detected after computer analysis of 526 heterotrophic bacterial strains tested for 76 characters. These facultative anaerobic symbionts metabolize a wide range of compounds and may be important in removing waste products while the sponges are not circulating water. The bacteria produce sticky-mucoid colonies and thus would contribute to sponge structural rigidity. The fourth sponge Ircinia wistarii contains a mixed aerobic population similar to that in the ambient water. The majority of the bacteria are located around the inhalant canals, facilitating the uptake of dissolved organic matter and oxygen from the incoming water.     

Microbial activities in the emitted hydrothermal waters of the Galápagos rift vents

In-situ measurement of chemolithotrophic and some heterotrophic microbial activities were made in the immediate vicinity of actively discharging hydrothermal vents of the Galápagos Rift region at depths of 2 500 to 2 600 m. The CO₂-assimilation or chemosynthesis productivity in the emitted vent waters, freshly mixed with oxygenated ambient seawater of 2°C, was minor compared to the bacterial biomass produced within the subsurface vent system prior to emission. Uptake of acetate and glucose indicated the presence of mixotrophic or facultatively chemolithotrophic bacteria in the emitted vent waters in agreement with isolations. Demonstration of ribulose bisphosphate carboxylase and phosphoenol pyruvate carboxylase in cultures of thiobacilli isolated from these vent water supports the notion that chemoautotrophic sulfur-oxidizing bacteria are one of the sources of primary production in the form of particulate organic carbon for filtering organisms in the deep sea hydrothermal environment. The rates of bacterial metabolic activities in emitted vent water are too low for the amount of invertebrate biomass and the rate of its growth and maintenance. Therefore, the larger portion of chemosynthetic sustenance of deep sea vent ecosystems appears to be based on symbiotic associations between bacteria and invertebrates and on surface attached bacteria.     

Mixing at a sediment concentration interface in turbulent open channel flow

In this work we address the role of turbulence on mixing of clear layer of fluid with sediment-laden layer of fluid at a sediment concentration interface. This process can be conceived as the entrainment of sediment-free fluid into the sediment-laden layer, or alternatively, as the transport of sediment into the top sediment-free flow. This process is governed by four parameters—Reynolds number of the flow \(Re_\tau\), non-dimensional settling velocity of the sediment (proxy for sediment size) \(\tilde{V}\), Richardson number \(Ri_\tau\) and Schmidt number Sc. For this work we have performed direct numerical simulations for fixed Reynolds and Schmidt numbers while varying the values of Richardson number and particle settling velocity. In the simple model considered here, the flow’s momentum and turbulence pre-exists over the entire layer of fluid, while the sediment is initially confined to a layer close to the bed. Mixing of sediment-free fluid with the sediment-laden layer is associated primarily with upward transport of sediment and buoyancy. There is no simultaneous upward transport of fluid momentum and turbulence into the sediment-free fluid layer, which is already in motion and turbulent. The analysis performed shows that the ability of the flow to transport a given sediment size decreases with the distance from the bottom, and thus only fine enough sediment particles are transported across the sediment concentration interface. For these cases, the concentration profiles evolve to a final steady state in good agreement with the well-known Rouse profile. The approach towards the Rouse profile happens through a transient self-similar state. This behavior of the flow is not seen for larger particles. Detailed analysis of the three dimensional structure of the sediment concentration interface shows the mechanisms by which sediment particles are lifted up by tongues of sediment-laden fluid with positive correlation between vertical velocity and sediment concentration. Finally, the mixing ability of the flow is addressed by monitoring the time evolution of the center of mass of the sediment-laden layer and the vertical location of the sediment-free/sediment-laden interface.     

Microbial respiratory and ectoenzymatic activities in the Northern Adriatic Sea (Mediterranean Sea)

The carbon transfer through the microbial community in two areas of the Northern Adriatic Sea was estimated by proteolytic and respiratory activities during four oceanographic surveys carried out in June, 1996, 1997 and February, 1997, 1998. In front of the Po Delta (area A), the mean rates of proteolytic activity range from 4.9 to 9.9 r µg r C r h r l; near Ancona (area B), they range from 3.1 to 7.6 r µg r C r h r l. Respiratory rates vary between 0.19 and 2.29 and between 0.24 and 1.40 r µg r C r h r l in areas A and B, respectively. In general, high rates occur in the surface layers, within the first 10 r m of depth. In area A, proteolytic and respiratory rates undergo seasonal course, with high activity in warm periods. In area B, respiration and bacterioplankton abundance increase from the first to the second year, whilst proteolytic activity decreases. The sequence of metabolic steps in the carbon transfer within the bacteria, from the biotic vs . the abiotic compartment, was drawn in order to define the actual role of bacterial biomass in the biogeochemical fluxes in an ecosystem which often suffers distrophic crises. Respiratory turnover rates, in the upper 10 r m depth, reach low values in cold periods and high values in June, 1997. The carbon transfer versus mineralization flows better in the summer period, in particular in June, 1997. However, the bacterial growth efficiency ranges from 17 to 38% in area A and from 13 to 44% in area B with highest values in February, 1997, when bacteria contribute in a relevant way to the overall respiration.     

A mesoscale vortex in a small stratified lake

A mesoscale vortex structure in the small stratified Lake Stechlin has been revealed by field experiments with satellite-tracked quasi-lagrangian drifters. The vortex with a radius of about 200 m drifted at 300 m/day along the western bight of the lake with nearly constant rotation speed of 3 cpd. Analysis of kinematical properties of the vortex motion demonstrates solid body character of rotation. Extrapolation of the vortex drift trajectory over the period preceding the observations combined with data on local winds and seiche dynamics has allowed tracing the vortex fate from its generation point. The normal modes analysis of the internal seiching in the lake reveals the vortex generation mechanism to be the interaction of certain seiche modes with local bottom topography and suggests generation of the mesoscale vortices to be the a regular feature of the lake circulation. Analysis of vorticity suggests additional energy supply to rotational flow, possibly from inverse cascading of small-scale turbulent motions—a feature typical for quasi-2D turbulence. The vortices can play an important role in the energy transport from basin-scale motions to small-scale boundary mixing. They can also contribute significantly to the horizontal heterogeneity of phyto- and zooplankton distribution as well as to the transport of dissolved matter such as nutrients between littoral and profundal areas. The topographically generated traveling vortices represent an analog of the synoptic eddies in the Ocean and in the Atmosphere, whereas their role in the lake hydrodynamics is practically unknown.     

长江口南北支浮游动物群落生态学研究

长江口特殊的生态环境使得浮游动物的种类组成、密度和时空分布等生态特征有别于其它水体。2005年秋季(丰水期)和2006年春季(枯水期)对长江口南北支浮游动物进行了2个航次的调查,沿南北支由西向东设立3个采样断面共20个采样点。共采集到浮游动物227种,其中轮虫65种,原生动物107种,枝角类15种,桡足类40种。优势种包括龟甲轮虫(Keratella)、刺簇多肢轮虫(Polyarthra trigla)、萼花臂尾轮虫(Brachionus calyciflorus)、砂壳虫(Difflugia)、表壳虫(Arcella)、砂壳纤毛虫(Tintinnid)、中华哲水蚤(Calanus sinicus)、汤匙华哲水蚤(Sinocalanus dorrii)、广布中剑水蚤(Mesocyclops leuckarti)、象鼻溞(Bosmina)等。文章对南北两支浮游动物的种类组成和结构进行了比较,南支浮游动物的种类、数量及生物多样都高于北支,南北两支的浮游动物群落相似度很低。南北两支水域环境的不同造成其浮游动物群落结构的较大差异,文章分析了环境因子与浮游动物群落结构的相关性,其中水温是重要的影响因素,水温的季节性决定...     

长江口南北支浮游动物群落生态学研究

长江口特殊的生态环境使得浮游动物的种类组成、密度和时空分布等生态特征有别于其它水体。2005年秋季（丰水期）和2006年春季（枯水期）对长江口南北支浮游动物进行了2个航次的调查,沿南北支由西向东设立3个采样断面共20个采样点。共采集到浮游动物227种,其中轮虫65种,原生动物107种,枝角类15种,桡足类40种。优势种包括龟甲轮虫（Keratella）、刺簇多肢轮虫（Polyarthra trigla）、萼花臂尾轮虫（Brachionus calyciflorus）、砂壳虫（Difflugia）、表壳虫（Arcella）、砂壳纤毛虫（Tintinnid）、中华哲水蚤（Calanus sinicus）、汤匙华哲水蚤（Sinocalanus dorrii）、广布中剑水蚤（Mesocyclops leuckarti）、象鼻溞（Bosmina）等。文章对南北两支浮游动物的种类组成和结构进行了比较,南支浮游动物的种类、数量及生物多样都高于北支,南北两支的浮游动物群落相似度很低。南北两支水域环境的不同造成其浮游动物群落结构的较大差异,文章分析了环境因子与浮游动物群落结构的相关性,其中水温是重要的影响因素,水温的季节性决定了浮游动物在时间分布上的变化。盐度对浮游动物群落结构的影响主要决定了其物种生态类型及空间分布。从整体上看,南北支主要受长江径流控制,浮游动物的种类组成以淡水种为主,咸水种在断面3出现较多。     

长沙市不同功能区空气微生物污染与评价

利用真菌、细菌综合培养基,采用自然沉降法对长沙市5个典型功能区进行空气微生物监测。结果表明,城区内不同功能区大气微生物的浓度各异,其中市区商业区、交通枢纽区的大气细菌污染最重,其次是休闲娱乐区和居民区,文教区大气细菌含量最低。绿化情况良好的休闲娱乐区的真菌含量高于交通枢纽区。以大气细菌含量指标评价了各测点的空气质量,空气质量处于微生物污染水平。     

Modeling pesticide fate in a small tidal estuary

The exposure analysis modeling system (EXAMS), a pesticide fate model developed by the U.S. Environmental Protection Agency, was modified to model the fate of the herbicides atrazine and metolachlor in a small tidally dominated estuary (Bath Creek) in North Carolina, USA where freshwater inflow accounts for only 3% of the total flow. The modifications simulated the changes that occur during the tidal cycle in the estuary, scenarios that are not possible with the original EXAMS model. Two models were created within EXAMS, a steady-state model and a time-variant tidally driven model. The steady-state model accounted for tidal flushing by simply altering freshwater input to yield an estuary residence time equal to that measured in Bath Creek. The tidal EXAMS model explicitly incorporated tidal flushing by modifying the EXAMS code to allow for temporal changes in estuary physical attributes (e.g., volume). The models were validated with empirical measurements of atrazine and metolachlor concentrations in the estuary shortly after herbicide application in nearby fields and immediately following a rain event. Both models provided excellent agreement with measured concentrations. The steady-state EXAMS model accurately predicted atrazine concentrations in the middle of the estuary over the first 3 days and under-predicted metolachlor by a factor of 2–3. The time-variant, tidally driven EXAMS model accurately predicted the rise and plateau of both herbicides over the 6-day measurement period. We have demonstrated the ability of these modified EXAMS models to be useful in predicting pesticide fate and exposure in small tidal estuaries. This is a significant improvement and expansion of the application of EXAMS, and given the wide use of EXAMS for surface water quality modeling by both researchers and regulators and the ability of EXAMS to interface with terrestrial models (e.g., pesticide root zone model) and bioaccumulation models, we now have an easily-accessible and widely accepted means of modeling chemical fate in estuaries.     

Variations in benthic community structure in a sub-tropical estuary

Abundances of macroinfaunal invertebrates in sand dollar (Dendraster excentricus) beds and in adjacent areas free of sand dollars were studied at 10 intertidal sites in the Pacific Northwest region of the USA and Canada. Each site was sampled once in late summer of 1977. There were no significant differences in overall diversity of species between the beds and adjacent areas; nor did cluster analysis indicate a sand dollar bed community. However, a polychaete (Armandia brevis) was significantly more abundant inside the beds than just outside them. Conversely, in comparison to the beds, adjacent regions contained significantly more specimens of the following species: a bivalve (Transennella tantilla), several tubicolous crustaceans (Corophium spp., Ampelisca agassizi, and Leptochelia savignyi) and two polychaetes (Glycinde polygnatha and Malacoceros arenicola). Sediment characteristics at each study site were not correlated with the presence or absence of sand dollars; moreover, a comparison among the 10 sites revealed no sediment characteristics typical of sand dollar beds. At most of the sites, significantly fewer tube-building invertebrates occurred inside sand dollar beds than outside. The discussion considers the possibility that mechanical disturbance by the sand dollars tends to exclude some macroinvertebrates (especially tubicolous ones) from sand dollar beds.     

Assessment of harbor seal predation on adult salmonids in a Pacific Northwest estuary.

The populations of many native species have increased or expanded in distribution in recent decades, sometimes with negative consequences to sympatric native species that are rarer or less adaptable to anthropogenic changes to the environment. An example of this phenomenon from the Pacific Northwest is predation by locally abundant pinnipeds (seals and sea lions) on threatened, endangered, or otherwise depleted salmonid (Oncorhynchus spp.) populations. We used survey sampling methodology, acoustic telemetry, and molecular genetics to quantify the amount of harbor seal (Phoca vitulina) predation on a depressed run of coho salmon (O. kisutch) and to determine whether some seals consumed a disproportionately higher number of salmonids than others. Based on a probability sample totaling 759.5 h of observation, we estimated that seals consumed 1161 adult salmonids (95% CI = 503-1818 salmonids) during daylight hours over an 18.9-km estuarine study area in Oregon during an 84-d period in fall 2002. Simultaneous tracking of 56 seals via an acoustic telemetry array indicated that a small proportion of marked seals (12.5%) exhibited behavior that was consistent with specialization on salmonids. These seals spent the majority of their time in the riverine portion of the study area and did so disproportionately more at night than day. Genetic analysis of 116 salmonid structures recovered from 11 seal fecal samples suggested that coho salmon accounted for approximately one-half of total salmonid consumption. Though subject to considerable uncertainty, the combined results lead us to infer that seals consumed 21% (range = 3-63%) of the estimated prespawning population of coho salmon. We speculate that the majority of the predation occurred upriver, at night, and was done by a relatively small proportion of the local seal population. Understanding the extent and nature of pinniped predation can provide important inputs into risk assessments and other modeling efforts designed to aid the conservation and recovery of salmonids in the Pacific Northwest. Such understanding may also help inform management actions designed to reduce the impact of pinniped predation on salmonids, which potentially range from short-term lethal removal programs to long-term ecosystem restoration and protection efforts.     

Using the bootstrap with two-phase adaptive stratified samples from multiple populations at multiple locations

Recently the two-phase adaptive stratified sampling design proposed by Francis (1984) has been extended by Manly et al. (2002) for situations where several biological populations are sampled simultaneously, and where this is done at several different geographical locations in order to estimate population totals or means. The method uses the results from a first phase sample to decide how best to allocate a second phase sample to locations and strata, in order to maximise a criterion (based on estimated coefficients of variation) that measures the accuracy of estimation for population totals, for all variables at all locations. One potential problem with this method is bias in the estimators of the population totals and means. In this paper bootstrapping is considered as a means of overcoming these biases. It is shown using model populations of Pacific walrus and shellfish, based on real data, that bootstrapping is a useful tool for removing about half of the bias. This is also confirmed from some simulations using artificial data.     

Turbulence and turbulent flux events in a small estuary

Relatively little systematic research has been conducted on the turbulence characteristics of small estuaries. In the present study, detailed measurements were conducted in a small subtropical estuary with a focus on turbulent flux events. Acoustic Doppler velocimeters were installed in the mid-estuary at fixed locations and sampled simultaneously and continuously for 50 h. A turbulent flux event analysis was performed for the entire data sets extending the technique of Narasimha et al. (Phil Trans R Soc Ser A 365:841–858, 2007) to the unsteady open channel flow motion and to turbulent sub-events. Turbulent bursting events were defined in terms of the instantaneous turbulent flux. The data showed close results for all ADV units. The very-large majority of turbulent events lasted between 0.04 and 0.3 s with an average of 1 to 4 turbulent events observed per second. A number of turbulent bursting events consisted of consecutive turbulent sub-events, with between 1 and 3 sub-events per main event on average. For all ADV systems, the number of events, event duration and event amplitude showed some tidal trends, with basic differences between high- and low-water periods. A comparison between the present estuary data and the atmospheric boundary layer results of Narasimha et al. (Phil Trans R Soc Ser A 365:841–858, 2007) showed a number of similarities and demonstrated the significance of turbulent events in environmental flows. A burstiness index of 0.85 was found for the present data.     

Distribution and retention of the copepodEurytemora affinis hirundoides in a turbid estuary

The spatial and temporal distribution of the copepodEurytemora affinis hirundoides (Nordquist, 1888) in the Gironde estuary, southwest France, was investigated in 1976, and between 1981 and 1983. The distribution pattern of the population bore a clear relationship to the patterns of water circulation and transport of particulate matter. Laboratory experiments suggested thatE. affinis hirundoides is incapable of autonomous displacement against the direction of general circulation and behaves as passive particles. A major problem faced by species living in estuaries is that of the maintenance of endemic populations. Some authors have suggested that behavioural responses may play an important role in minimising population losses. Our study indicated that hydrodynamic processes are sufficient to explain the distribution and retention ofE. affinis hirundoides, whose populations are retained in the estuary in the same manner as the suspended sediment. Since the outflow of particulate matter from the Gironde estuary to the sea is very sporadic, we hypothesize that most of the production ofE. affinis hirundoides remains within the estuary, and does not fertilize the continental shelf, at least not in the form of particulate organic matter.     

铜尾矿复垦后土壤微生物活性及其群落功能多样性研究

对安徽铜陵五公里尾矿区三叶草复垦后的土壤微生物活性和群落的功能多样性研究表明,复垦后每克土壤微生物细菌数已达2.3×107个,并存在一定量耐Cu2 、Cd2 、Zn2 、Cr6 、Pb2 、Ni2 的菌株,但种类少,主要为芽孢杆菌属、假单胞菌属和短杆菌属。BIOLOG测试结果显示,铜镉重金属离子的复合污染使土壤微生物群落丰富度降低;外源耐铜镉微生物菌剂的添加使尾矿区土壤微生物群落代谢剖面(AWCD)变化明显,提高微生物对单一碳源底物的利用能力,增加利用不同碳底物的微生物数量,减轻了重金属污染引起的土壤微生物群落功能多样性的下降,为尾矿区生境加速恢复提供一条有效途径。