Stratification effects on hydrodynamics and mixing at a river confluence with discordant bed

Environmental Fluid Mechanics - Stratification effects induced by density differences between the incoming flows are investigated at a medium-size stream confluence with a highly discordant bed....     

Hydrodynamics and contaminant transport on a degraded bed at a 90-degree channel confluence

Channel confluences at which two channels merge have an important effect on momentum exchange and contaminant diffusion in both natural rivers and artificial canals. In this study, a three-dimensional numerical model, which is based on the Reynolds Averaged Navier–Stokes equations and Reynolds Stress Turbulence model, is applied to simulate and compare flow patterns and contaminant transport processes for different bed morphologies. The results clearly show that the distribution of contaminant concentrations is mainly controlled by the shear layer and two counter-rotating helical cells, which in turn are affected by the discharge ratio and the bed morphology. As the discharge ratio increases, the shear flow moves to the outer bank and the counter-clockwise tributary helical cell caused by flow deflection is enlarged, leading the mixing happens near the outer bank and the mixing layer distorted. The bed morphology can induce shrinkage of the separation zone and increase of the clockwise main channel helical cell, which is initiated by the interaction between the tributary helical cell and the main channel flow and strengthened by the deep scour hole. The bed morphology can also affect the distortion direction of the mixing layer. Both a large discharge ratio and the bed morphology could lead to an increase in mixing intensity.     

Quantifying a significance of sediment particle size to hyporheic sedimentary oxygen demand with a permeable stream bed

A mechanistic model of sedimentary oxygen demand (SOD) for hyporheic flow is presented. The permeable sediment bed, e.g. sand or fine gravel, is considered with hydraulic conductivity in the range $0.1 < K < 20$  cm/s. Hyporheic pore water flow is induced by pressure fluctuations at the sediment/water interface due to near-bed turbulent coherent motions. A 2-D advection–diffusion equation is linked to the pore water flow model to simulate the effect of advection–dispersion driven by interstitial flow on oxygen transfer through the permeable sediment. Microbial oxygen uptake in the sediment is expressed as a function of the microbial growth rate, and is related to the sediment properties, i.e. the grain diameter $(d_{s})$ and porosity $(\phi )$ . The model describes the significance of sediment particle size to oxygen transfer through the sediment and microbial oxygen uptake: With increasing grain diameter $(d_{s})$ , the hydraulic conductivity $(K)$ increases so does the oxygen transfer rate, while particle surface area per volume (the available surface area for colonization by biofilms) decreases reducing the microbial oxygen uptake rate. Simulation results show that SOD increases as the hydraulic conductivity $(K)$ increases before a threshold has been reached. After that, SOD diminishes with the increment of the hydraulic conductivity $(K)$ .     

Influence of social factors on sex ratio at birth,maternal investment and young survival in a prosimian primate

Summary In order to determine whether social factors influence sex ratio at birth in lesser mouse lemurs, experiments were conducted during 5 successive breeding periods on 51 females. At the beginning of the breeding season, females were either isolated (I) or grouped (G) in heterosexual groups with an increasing number of females (2, 3 or 4). To ensure mating, I females were introduced in a group only during the oestrous period. After mating, both I and G females were isolated during pregnancy and lactation. Reproductive capacities of females in terms of oestrus occurrences (n = 324), impregnations (n–210), pregnancies (n = 136) or abortions (n = 38) or litter sizes (1–3 young) were affected neither by age and parity of females nor by group housing prior to conception. G females produced significantly more sons than daughters (67% males for 189 newborn) while females living alone except during the mating period demonstrated a significant inverse tendency (39.6% males for 96 newborn). Distribution of sexes in litters was statistically different from random and varied according to the shift of sex ratio at birth. In G females, the shift in the sex ratio towards males was consistent across the different groups, independent of the number of females living together, suggesting that the presence of only 1 female is sufficient to induce a bias in the sex ratio. No correlation was found between infant survival at weaning and age, parity or group housing of the mother. The maternal investment allocated to male or female newborn was similar provided the litter contained at least 1 male. In litters without males, growth and survival of female infants were significantly less. These results on sex ratio bias in captive female mouse lemurs agree with directions of bias predicted by the local resource competition model for facultative sex ratio adjustment (Clark 1978). Nevertheless, the pattern observed in mouse lemurs appears to be independent of the nutritional state of the female and of differential maternal investment.     

Influence of the secondary motions on pollutant mixing in a meandering open channel flow

This paper presents large eddy simulation of turbulent flow in a meandering open channel with smooth wall and rectangular cross-section. The Reynolds number based on the channel height is 40,000 and the aspect ratio of the cross-section is 4.48. The depth-averaged mean stream-wise velocity agree well to experimental measurements. In this specific case, two interacting cells are formed that swap from one bend to the other. Transport and mixing of a pollutant is analysed using three different positions of release, e.g. on the inner bank, on the outer bank and on the centre of the cross section. The obtained depth-average mean concentration profiles are reasonably consistent with available experimental data. The role of the secondary motions in the mixing processes is the main focus of the discussion. It is found that the mixing when the scalar is released on the centre of the cross-section is stronger and faster than the mixing of the scalar released on the sides. When the position of release is close to a bank side, the mixing is weaker and a clear concentration of scalar close to the corresponding side-wall can be observed in both cases.     

Influence of velocity field on driftwood accumulation at a bridge with a single pier

Environmental Fluid Mechanics - Transport of driftwood during heavy rainfall events can intensify the flood hazard. Driftwood accumulates at a bridge and backwater rises. Accumulated logs sink...     

A comparison of sensitivity analysis and error analysis based on a stream ecosystem model

When individual model parameters must be measured in field or laboratory experiments, the provision of feedback information for allocation of research efforts is an important function of modeling. Both sensitivity analysis and Monte Carlo error analysis can be used to determine which parameters require intensified measurement effort. When both methods are applied to a stream ecosystem model, the assumptions of sensitivity analysis are violated if reasonable estimates of measurement errors on parameters are used. Sensitivity analysis estimates a linear relationship between a state variable and a parameter and largely ignores higher order effects.In the model investigated in this study, higher-order effects dominate prediction error, and the results of sensitivity analysis are misleading. It is suggested that the simple correlation coefficient derived from analysis of Monte Carlo simulations is a more reasonable way to rank model parameters according to their contribution to prediction uncertainty. For the stream model used in this study, halving variance on the four parameters, indicated as most important by sensitivity analysis, reduces prediction errors by only 2–6%. Halving variance on the four, completely different, parameters with the largest simple correlation coefficients reduces prediction errors by 17–31%.     

Epibiosis on cerith shells in a seagrass bed: correlation of shell occupant with epizoite distribution and abundance

The cerith Cerithium atratum (Born 1778) is an abundant gastropod in the seagrass beds at Cabo Frio, Brazil. In order to estimate the ecological importance of cerith shells as a rare hard substratum in the seagrass bed, the abundances of C. atratum and of cerith shells occupied by hermit crabs were quantified. The mean densities of C. atratum and hermit crabs were 1887 and 100 individuals m⁻², respectively, and these provided 0.5 m² shell area m⁻² available for epizoite colonization. The tube-forming polychaete Hydroides plateni (Kinberg 1867) and oyster Ostrea puelchana Orbigny, 1841 were the dominant visible epizoites on inhabited cerith shells. These epizoite populations were compared in order to investigate whether the temporal and spatial patterns in the epibiotic community were related to ecological and behavioral aspects of the occupant species (cerith or hermit crab). Larger cerith shells had a greater abundance of epizoites. Each epizoite showed a preference for a different occupant of the shells (the oyster for C. atratum and the polychaete for cerith shells occupied by hermit crabs). The oyster showed a seasonal pattern in abundance on C. atratum, being more common in fall (March–April). The distribution of the epizoites on the shells depended on the shell occupant species and was probably related to their different foraging activity –C. atratum ploughs half buried through the sediment, while the hermit crab crawls on the sediment surface. In both cases, the activity of the shell occupant was considered to be beneficial to the epizoites, as empty shells and shell fragments did not support a macroepifauna. Received: 1 May 2000 / Accepted: 8 August 2000     

海水混合和层化对叶绿素a垂直分布的影响

根据长江口海区、近岸浅水区、黄海冷水团海区和水深超过200m的陆架区等四个区域的定点调查获得的数据，分析了温度、盐度与叶绿素a垂直分布的相互关系。结果表明，长江口海区，陆源径流与海水混合不充分，表层营养盐含量较高，表层叶绿素a含量高于中下水层。近岸浅水区的苏北近岸海水垂向没有温跃层和盐跃层，叶绿素a的垂向分布也均匀，东海西部沿岸出现逆温跃层和逆盐跃层，海水垂直混合不充分，叶绿素a含量(6．72mg／m^3)在10m深水域最高。黄海冷水团海区海水的垂直混合不充分，叶绿素a的垂直变化显著，高值区出现在温跃层下方(4．37mg／m^3)。水深超过200m的陆架区，温度的阶梯状结构、营养盐跃层、光照等因素共同导致整个水层叶绿素a含量普遍较低。同时，结合历史资料分析认为，海水的混合、温度和盐度的层化将影响营养盐的浓度和分布，从而影响海水中叶绿素a的垂直分布。     

Modification of a stream temperature model with Beer's law and application to GaoShan Creek in Taiwan

A physics-based stream temperature model [Tung, C.P., Lee, T.Y., Yang, Y.C., 2006. Modelling climate-change impacts on stream temperature of Formosan Landlocked Salmon habitat. Hydrol. Process. 20, 1629–1649] was improved by incorporating shading effects caused by both cliff terrain and riverbank dense vegetation to simulate hourly stream temperature variations in 1 day. Daily maximal stream temperature is a critical factor to the habit distribution of the Formosan Landlocked Salmon, an important and endangered species. Currently, it only can be found in ChiChiaWan Creek and GaoShan Creek in Taiwan. The former stream temperature model only considers the shading effects of cliff terrain and works well for ChiChiaWan Creek, but overestimates stream temperatures of GaoShan Creek having dense riverbank vegetative covers. The model was modified with the Beer's law and a parameterization scheme to describe the diminishing of the incident solar radiation to take vegetative shading effects into account. Simulation results of GaoShan Creek show the success of this improvement. The shading effects induced by both terrain and vegetation can significantly affect stream temperature distributions. Simulation experiments were conducted to indicate shading effects are varied in different watersheds and seasons.     

Model of turbulence penetration into a suspension layer on a sediment bed and effect on vertical solute transfer

The vertical diffusional mass (solute) transfer through a suspended sediment layer, e.g. at the bottom of a lake, reservoir or estuary, by the propagation of velocity fluctuations from above was investigated. The attenuation of the velocity fluctuations in the suspension layer and the associated effect on solute transfer through the suspension layer was simulated. To represent large eddies traveling downstream in water over a high-concentration suspended sediment layer, a streamwise velocity fluctuation moving in downstream direction was imposed along the upper boundary of the suspension layer. Velocity fluctuations and downstream velocity were normalized by the shearvelocity (U_*) at the top of the suspension layer. Streamwise and vertical velocity components inside the suspension layer, were obtained from the 2-D continuity and the Navier–Stokes equations. The persistence of turbulence with depth—as it penetrates from the overlying water into the suspension layer—was found to depend on its amplitude, its period, and on the apparent viscosity of the suspension. The turbulence was found to propagate efficiently into the suspension layer when its frequency is low, and the apparent viscosity of the suspension is high. Effects on vertical mass transfer were parameterized by penetration depth and effective diffusion coefficient, and related to apparent viscosity of the suspension, Schmidt number and shear velocity on top of the suspension layer. The enhancement of turbulence penetration by viscosity is similar to the flow near an oscillating flat plate (Stokes’ second problem), but is opposite to turbulence penetration into a stationary porous and permeable sediment bed. The information is applicable to water quality modeling mear the sediment/water interface of lakes, river impoundments and estuaries.     

Explaining long-distance dispersal: effects of dispersal distance on survival and growth in a stream salamander

Long-distance dispersal (LDD) may contribute disproportionately to range expansions, the creation of new evolutionary lineages, and species persistence in human-dominated landscapes. However, because data on the individual consequences of dispersal distance are extremely limited, we have little insight on how LDD is maintained in natural populations. I used six years of spatially explicit capture-mark-recapture (CMR) data to test the prediction that individual performance increases with dispersal distance in the stream salamander Gyrinophilus porphyriticus. Dispersal distance was total distance moved along the 1-km study stream, ranging from 0 to 565 m. To quantify individual performance, I used CMR estimates of survival and individual growth rates based on change in body length. Survival and growth rates increased significantly with dispersal distance. These relationships were not confounded by pre-dispersal body condition or by ecological gradients along the stream. Individual benefits of LDD were likely caused by an increase in the upper limit of settlement site quality with dispersal distance. My results do not support the view that the fitness consequences of LDD are unpredictable and instead suggest that consistent evolutionary mechanisms may explain the prevalence of LDD in nature. They also highlight the value of direct CMR data for understanding the individual consequences of variation in dispersal distance and how that variation is maintained in natural populations.     

乌鲁木齐市南山雾水的化学组成及对环境影响

采用静态雾水采集器,在距新疆乌鲁木齐市58 km的南山地区白杨沟海拔1 922 m处,进行连续间隔采样,研究其化学成份、分析其成因及对南山原始植物林带的影响。结果表明南山白杨沟地区SO42-、NO3-、Cl-浓度(7171、22、265μmol/L)远高于较清洁的景洪、舟山、庐山等地的值。且五月SO42-、NO3-、Cl-浓度远高于3、4月的值,可认为南山白杨沟地区已开始受到人为污染,雾对其周围环境有害而无利。     

The effects of ammonium and phosphate enrichments on clorophyll a,pigment ratio and species composition of phytoplankton of Vineyard Sound

Seawater containing natural phytoplankton populations from Vineyard Sound, USA was enriched in the laboratory with three levels each of ammonium and phosphate and with a combination of ammonium and phosphate which provided three different N:P ratios. The addition of ammonium produced more cells and chlorophyll a than the control or the phosphate enrichments. However, enrichment with ammonium and phosphate, regardless of the N:P ratio, yielded the most cells and chlorophyll a. Thus, nitrogen seems to be the primary limiting nutrient, with phosphate showing secondary limiting effects. The ratios of photosynthetic pigments decreased with the increased chlorophyll a production in the enriched cultures. There were no significant changes in the species composition within the cultures, so that the observed changes in pigment ratio and chlorophyll a content were due to physiological responses.     

Influence of a Large Herbivore Reintroduction on Plant Invasions and Community Composition in a California Grassland

Abstract:  Despite many successful reintroductions of large mammalian herbivores throughout the world, remarkably little attention has focused on how these actions affect native and exotic vegetation at reintroduction sites. One such herbivore is tule elk ( Cervus elaphus nannodes ), which was on the brink of extinction in the mid 1800s, but now has numerous stable populations due to intensive reintroduction efforts. Here, we summarize results from a 5-year exclosure experiment that explored the effects of tule elk on a coastal grassland in northern California. Elk significantly altered the species composition of this community; the response of annual species (dominated heavily by exotic taxa) was dramatically different from perennial species. Elk herbivory increased the abundance and aboveground biomass of native and exotic annuals, whereas it either had no effect on or caused significant decreases in perennials. Elk also decreased the cover of native shrubs, suggesting that these herbivores play an important role in maintaining open grasslands. In addition, elk significantly reduced the abundance and biomass of a highly invasive exotic grass , Holcus lanatus, which is a major problem in mesic perennial grasslands. Our results demonstrate that the successful reintroduction of a charismatic and long-extirpated mammal had extremely complex effects on the plant community, giving rise to both desirable and undesirable outcomes from a management perspective. We suspect that these kinds of opposing effects are not unique to tule elk and that land managers will frequently encounter them when dealing with reintroduced mammals.     

The downfall of mating: the effect of mate-carrying and flight muscle ratio on the escape ability of a pierid butterfly

In many species, the ability to evade predators is known to be periodically impaired by increased weight loads due to feeding and reproduction. Not only may extra weight reduce escape speed, but feeding and mating can also make the prey more noticeable to visually hunting predators. A number of butterfly species mate for hours, and if a mating couple is disturbed, one of the butterflies is responsible for flying, whereas its partner remains still. This study investigated the ability of male Pieris napi butterflies to fly while mating, with the prediction that mate carrying impairs flight ability compared to single flying males and that males with relatively high flight muscle ratios (FMR; male thorax mass/male + female body mass) will have better flight performance in copula. Our results clearly show that whereas single males always take off at steep angles and fly upwards, couples invariably have a negative take-off angle and rarely gain height. Moreover, landing height of the couples is positively associated with higher FMR. Hence, male flight ability when in copula is positively associated with a high relative thorax mass. Butterfly pairs may thus be at greater risk of predation as a consequence of their impaired flight ability, especially couples with critically low FMRs (<16%).     

Influence of Habitat Patchiness on Genetic Diversity and Spatial Structure of a Serpentine Endemic Plant

Abstract: Conservation of rare plant species often involves small, local populations dispersed within apparently suitable habitat. We used enzyme electrophoresis to study genotypic diversity in 32 populations of Calystegia collina , a self-incompatible clonal plant endemic to serpentine substrate in northern California's Coast Range. Genotypic diversity within a population was a good predictor of seed set by randomly marked flowers. Ramets from the most abundant genotypes in a population were most likely to produce flowers, but flowers from abundant genotypes were less likely to produce seed capsules than were flowers from rarer genotypes. These results are consistent with previous findings that reproductive success in C. collina is limited by the availability of compatible pollen. On small serpentine outcrops supporting only one or two populations, C. collina did not show reduced genotypic diversity or heterozygosity compared with populations on large outcrops supporting many populations. Instead, genotypic diversity and outcrop size had strong but independent influences on reproductive success. Although large serpentine outcrops contain more populations and provide better conditions for flower and seed production, significant diversity of unique genotypes clearly exists in isolated serpentine outcrops. Our findings suggest that plant conservation strategies must take into account the natural distribution of populations. The effects of habitat fragmentation on C. collina and other plant species that occur naturally in small, discrete patches may be unlike those that have been documented in more recently fragmented species.     

Influence of low and decreasing food levels on Daphnia-algal interactions: Numerical experiments with a new dynamic energy budget model

Based on numerical experiments with a new physiologically structured population model we demonstrate that predator physiology under low food and under starving conditions can have substantial implications for population dynamics in predator-prey interactions. We focused on Daphnia-algae interactions as model system and developed a new dynamic energy budget (DEB) model for individual daphnids. This model integrates the κ-rule approach common to net assimilation models into a net-production model, but uses a fixed allocation of net-productive energy in juveniles. The new DEB-model agrees well with the results of life history experiments with Daphnia. Compared to a pure κ-rule model the new allocation scheme leads to significant earlier maturation at low food levels and thus is in better agreement with the data. Incorporation of the new DEB-model into a physiologically structured population model using a box-car elevator technique revealed that the dynamics of Daphnia-algae interactions are highly sensitive to the assumptions on the energy allocation of juveniles under low food conditions. Additionally we show that also other energy allocation rules of our DEB-model concerning decreasing food levels and starving conditions at the individual level have strong implications for Daphnia-algae interactions at the population level. With increasing carrying capacity of algae a stable equilibrium with coexistence of Daphnia occurs and algae shifts to limit cycles. The amplitudes of the limit cycles increase with increasing percentage of sustainable weight loss. If a κ-rule energy allocation is applied to juveniles, the stable equilibrium occurs for a much narrower range of algal carrying capacities, the algal concentration at equilibrium is about 2 times larger, and the range of algae carrying capacities at which daphnids become extinct extends to higher carrying capacities than in the new DEB-model. Because predator-prey dynamics are very sensitive to predator physiology under low food and starving conditions, empirical constraints of predator physiology under these conditions are essential when comparing model results with observations in laboratory experiments or in the field.     

Effect of natural and synthetic organic-Fe(III) complexes in an estuarine mixing model on iron uptake and growth of a coastal marine diatom, Chaetoceros sociale

Cell growth of a coastal marine diatom, Chaetoceros sociale, in the presence of different premixed organic-Fe(III) complexes [EDTA-Fe(III) (100:1 and 2:1), citric-Fe(III) (100:1) and fulvic-Fe(III) (0.1, 0.2 and 1 ppm C)] and solid amorphous hydrous ferric oxide [am-Fe(III) or Fe(III) hydroxide] were experimentally measured in culture experiments at 10 °C under 3000 lux fluorescent light. Fulvic-Fe(III) (0.1 and 0.2 ppm C) and citric-Fe(III) (100:1) induced maximal cell yields of C. sociale. The order of cell yields was: fulvic-Fe(III) (0.1 and 0.2 ppm C) ≥ citric-Fe(III) (100:1) > EDTA-Fe(III) (2:1) ≫ solid am-Fe(III) > EDTA-Fe(III) (100:1) ≫ fulvic-Fe(III) (1 ppm C). The short-term iron uptake rates by C. sociale in fulvic-Fe(III) (0.1 and 0.2 ppm C) and citric-Fe(III) (100:1) media were about five to six times faster than those in EDTA-Fe(III) (100:1) and solid am-Fe(III) media. The dissociative precipitation rates of premixed organic-Fe(III) complexes in seawater at 10 °C were determined by simple filtration (0.025 μm) involving γ-activity measurements of ⁵⁹Fe. The order of estimated initial Fe(III) dissociative precipitation rates of these organic-Fe(III) complexes in seawater were nearly consistent with those of cell yields in the culture experiments and short-term iron uptake rates by C. sociale [except for fulvic-Fe(III) (1 ppm C) medium]. In fulvic-Fe(III) (0.1 and 0.2 ppm C), citric-Fe(III) (100:1) and EDTA-Fe(III) (2:1) media, the concentrations of dissolved organic-Fe(III) complexes in initial culture experiments are prone to supersaturate under the culture conditions. The supersaturated dissolved organic-Fe(III) complex in seawater supplies biologically available inorganic Fe(III) species in culture media through its dissociation at high pH and high levels of seawater cations. Therefore, the natural dissolved organic-Fe(III) complexes supplied by riverine input may play an important role in supplying bioavailable iron in estuarine mixing system and coastal waters. Received: 6 September 1998 / Accepted: 8 April 1999