Turbulence and turbulent flux events in a small estuary

Relatively little systematic research has been conducted on the turbulence characteristics of small estuaries. In the present study, detailed measurements were conducted in a small subtropical estuary with a focus on turbulent flux events. Acoustic Doppler velocimeters were installed in the mid-estuary at fixed locations and sampled simultaneously and continuously for 50 h. A turbulent flux event analysis was performed for the entire data sets extending the technique of Narasimha et al. (Phil Trans R Soc Ser A 365:841–858, 2007) to the unsteady open channel flow motion and to turbulent sub-events. Turbulent bursting events were defined in terms of the instantaneous turbulent flux. The data showed close results for all ADV units. The very-large majority of turbulent events lasted between 0.04 and 0.3 s with an average of 1 to 4 turbulent events observed per second. A number of turbulent bursting events consisted of consecutive turbulent sub-events, with between 1 and 3 sub-events per main event on average. For all ADV systems, the number of events, event duration and event amplitude showed some tidal trends, with basic differences between high- and low-water periods. A comparison between the present estuary data and the atmospheric boundary layer results of Narasimha et al. (Phil Trans R Soc Ser A 365:841–858, 2007) showed a number of similarities and demonstrated the significance of turbulent events in environmental flows. A burstiness index of 0.85 was found for the present data.     

Lionfish alter benthic invertebrate assemblages in patch habitats of a subtropical estuary

Invasive lionfish (primarily Pterois volitans) have spread throughout the Caribbean region, Gulf of Mexico, and the Southeast US coast, and resulting impacts on reef fish populations have been well documented. We examined whether lionfish can likewise affect benthic invertebrate communities, using an in situ caging experiment, in the Loxahatchee Estuary, Florida, USA. We found that lionfish caused significant declines in the three most abundant benthic invertebrate species, driving an overall shift in assemblage composition. For example, grass shrimp (Palaemonidae) abundance was reduced by nearly 90 % in the presence of lionfish. Species richness of benthic organisms was significantly higher when lionfish were present, suggesting potentially complex emergent effects of lionfish predation on benthic assemblages. Despite the fact that this experiment was conducted in just a single location using relatively small experimental units, we show altered benthic invertebrate communities could well be an additional outcome of the lionfish invasion.     

Modeling pesticide fate in a small tidal estuary

The exposure analysis modeling system (EXAMS), a pesticide fate model developed by the U.S. Environmental Protection Agency, was modified to model the fate of the herbicides atrazine and metolachlor in a small tidally dominated estuary (Bath Creek) in North Carolina, USA where freshwater inflow accounts for only 3% of the total flow. The modifications simulated the changes that occur during the tidal cycle in the estuary, scenarios that are not possible with the original EXAMS model. Two models were created within EXAMS, a steady-state model and a time-variant tidally driven model. The steady-state model accounted for tidal flushing by simply altering freshwater input to yield an estuary residence time equal to that measured in Bath Creek. The tidal EXAMS model explicitly incorporated tidal flushing by modifying the EXAMS code to allow for temporal changes in estuary physical attributes (e.g., volume). The models were validated with empirical measurements of atrazine and metolachlor concentrations in the estuary shortly after herbicide application in nearby fields and immediately following a rain event. Both models provided excellent agreement with measured concentrations. The steady-state EXAMS model accurately predicted atrazine concentrations in the middle of the estuary over the first 3 days and under-predicted metolachlor by a factor of 2–3. The time-variant, tidally driven EXAMS model accurately predicted the rise and plateau of both herbicides over the 6-day measurement period. We have demonstrated the ability of these modified EXAMS models to be useful in predicting pesticide fate and exposure in small tidal estuaries. This is a significant improvement and expansion of the application of EXAMS, and given the wide use of EXAMS for surface water quality modeling by both researchers and regulators and the ability of EXAMS to interface with terrestrial models (e.g., pesticide root zone model) and bioaccumulation models, we now have an easily-accessible and widely accepted means of modeling chemical fate in estuaries.     

Sexual signalling and viability in a wolf spider (Hygrolycosa rubrofasciata): measurements under laboratory and field conditions

This study examined the crucial prediction of the conditional-handicap theory, the relationship between male sexual trait size and male viability, in the wolf spider Hygrolycosa rubrofasciata. In this species, males court females by drumming dry leaves with their abdomen, and males with the highest drumming rate enjoy highest mating success. We determined male drumming rate, body mass, and mobility, which reflects mate-searching activity, in relation to male survival. Because it is often difficult to know how results obtained from laboratory studies reflect the natural world, particularly when the measured variable is survival, we repeated our study in both laboratory and field conditions. Males drumming at the highest rate survived better than males drumming at a lower rate in both laboratory and field conditions. These results are in accordance with the predictions of conditional-handicap models of sexual selection. Survival was independent of male body mass and there was no significant correlation between male drumming activity and body mass. However, large males moved further than smaller males, and males moving longer distances lost less mass than those moving shorter distances. These results suggest that, moving, and consequently mate-searching activity, may be a condition-dependent trait and that there may be a advantage for large males in mate searching. Received: 22 October 1998 / Received in revised form: 28 January 1999 / Accepted: 14 February 1999     

Turbulence and aeration in hydraulic jumps: free-surface fluctuation and integral turbulent scale measurements

In an open channel, a change from a supercritical to subcritical flow is a strong dissipative process called a hydraulic jump. Herein some new measurements of free-surface fluctuations of the impingement perimeter and integral turbulent time and length scales in the roller are presented with a focus on turbulence in hydraulic jumps with a marked roller. The observations highlighted the fluctuating nature of the impingement perimeter in terms of both longitudinal and transverse locations. The results showed further the close link between the production and detachment of large eddies in jump shear layer, and the longitudinal fluctuations of the jump toe. They highlighted the importance of the impingement perimeter as the origin of the developing shear layer and a source of vorticity. The air–water flow measurements emphasised the intense flow aeration. The turbulent velocity distributions presented a shape similar to a wall jet solution with a marked shear layer downstream of the impingement point. The integral turbulent length scale distributions exhibited a monotonic increase with increasing vertical elevation within 0.2 < L_z/d₁ < 0.8 in the shear layer, where L_z is the integral turbulent length scale and d₁ the inflow depth, while the integral turbulent time scales were about two orders of magnitude smaller than the period of impingement position longitudinal oscillations.     

An introduction to flux measurements in difficult conditions

The origins of the aerodynamic techniques now widely used at sites around the world to measure continuous biosphere-atmosphere exchange of carbon and energy are briefly reviewed. A survey of the current state of this approach concludes that the technique often fails when standard analysis routines are applied to data from single towers in complex flows. In the daytime, problems are signaled by failure to close the surface energy balance because turbulent energy fluxes are routinely underestimated. Complex flows are more prevalent at night when they lead to failure to measure all the respired CO2. At such times, the aerodynamic methodology is commonly supplemented by biological models. A set of papers from a workshop on "Flux Measurements in Difficult Conditions" held at the National Center for Atmospheric Research (NCAR) in January 2006 are introduced next. Two papers review the causes and magnitude of these flow-based problems. Four papers describe intensive field experiments that detail the mechanisms that cause problematic complex flows. These experiments show, inter alia, that the technique of replacing nighttime eddy flux measurements by biological models can also be systematically biased. Finally, two model studies are used both to illustrate the physics behind these complex flows and to motivate an approach to systematic correction of single-tower results.     

In situ measurements of photosynthetic irradiance responses of two Red Sea sponges growing under dim light conditions

Photosynthetic responses to irradiance by the photosymbionts of the two Red Sea sponges Theonella swinhoei (Gray) and Clionavastifica (Hancock) growing under dim light conditions were measured in situ (in September 1997) using a newly developed underwater pulse amplitude modulated (PAM) fluorometer. Relative rates of photosynthetic electron transport (ETR) were calculated as the effective quantum yield of photosystem II (Y ) multiplied with the photosynthetic photon flux (PPF). Photosynthesis versus irradiance (P-I ) curves, obtained within minutes, showed that individual specimens of both sponges, growing under very low light conditions, feature lower light saturation points as well as lower maximal ETRs than individuals growing under higher light. Evaluations of such curves using low irradiances of the actinic light source (20 to 130 μmol photons m⁻² s⁻¹) showed a general decrease in Y, with a shoulder from the lowest irradiance applied till 20 to 30 μmol photons m⁻² s⁻¹. Point measurements yielded ETRs close to what could be estimated from the P-I curves. These point measurements also revealed good correlations between the diurnally changing ambient irradiances (1 to 50 μmol photons m⁻² s⁻¹) and average ETR values for both species. Further analysis showed that although Y values varied considerably between the different point measurements, they did not decrease significantly with light under these very low irradiances. Therefore, PPF rather than Y seems to determine the in situ diel photosynthetic performance at the low ambient irradiances experienced by these sponges. Received: 22 November 1997 / Accepted: 8 April 1998     

Salt movement in a fine-textured processed oil shale under semi-arid conditions

Environmental Geochemistry and Health - A high soluble salt content in processed oil shales or other mineral wastes can pose problems in vegetation establishment on disposal piles and in water...     

Seasonal growth and biomass of the subtropical seagrassHalodule wrightii in relation to continuous measurements of underwater irradiance

Continuous year-round measurements of photosynthetically active radiation (PAR) were collected in relation to leaf elongation and plant biomass in the shoal-grass,Halodule wrightii Aschers., within three different estuarine systems on the south Texas coast (Laguna Madre: May 1989 to September 1993; Corpus Christi Bay: February 1990 to September 1993; San Antonio Bay; May 1990 to April 1991). Large differences in water transparency at all three sites masked seasonal variations in surface insolation as reflected in average diffuse attenuation coefficient (k) values ranging from 0.7 to 2.9 and differences in the maximum depth penetration ofH. wrightii, which varied from 0.6 to about 1.3 m. The continuous presence of a chrysophyte (brown tide) algal bloom in Laguna Madre since 1990 led to significant decreases in spring leaf elongation rates and a nearly 50% decline in below-ground biomass, which was reflected in root:shoot ratio (RSR) values that declined from 5.4 in 1989 to 2.3 in 1992. Increased turbidity and lower light levels in San Antonio Bay also corresponded with diminished plant biomass and the subsequent loss of plants; at both locations, the annual quantum flux ranged from 2200 to 2400 mol m^-2yr^-1, or about 18% of surface irradiance (SI). In contrast,H. wrightii populations growing at ca.1.2 m depths and characterized by high RSR values (4.0) were exposed to 5100 to 5700 mol m^-2yr^-1, or about 41 to 46% SI. Under these conditions, plants were exposed to daily saturating levels of PAR (H _sat) of 3 to 8 h during the spring/summer period of maximum growth, compared to an average of 2 h in Laguna Madre (after 1990) and San Antonio Bay based on field-derived measurements of photosynthetic parameters. Leaf elongation inH. wrightii exhibited a clear circannual rhythm at all sites, regardless of underwater light levels and therefore was not a sensitive indicator of light stress. Instead, chronic long-term reductions in underwater PAR were most strongly reflected in total plant biomass. The higher light demand (18% SI) forH. wrightii in relation to many other seagrasses (11% SI; Duarte 1991) may be related to its higher photosynthetic light requirement, but may also reflect the different methods used to evaluate the minimum light requirements of seagrasses. In estuarine and coastal waters, which are characterized by large and unpredictable variations in water transparency, continuous measurements of in situ PAR are invaluable in assessing the growth and photosynthetic response of seagrasses to variations in underwater irradiance.The University of Texas at Austin, Marine Science Institute Contribution No. 913     

Bacterivory of a mudflat nematode community under different environmental conditions

The fate of the benthic bacterial biomass is a topic of major importance in understanding how soft-bottom environments function. Because of their high abundance, production and nutritional value, benthic bacteria may constitute an important food resource for benthic fauna. The trophic role of bacteria for a nematode community on the Brouage mudflat (Marennes-Oléron-France), dominated by three species: Chromadora macrolaima (64% of the abundance), Daptonema oxycerca (15%) and Ptycholaimellus jacobi (8%), was determined in grazing experiments using ¹⁵N pre-enriched bacteria. On intertidal flats, seasonal, tidal and circadian cycles induce strong variations in environmental conditions. Grazing experiments were performed in order to measure the effects of abiotic (temperature, salinity and luminosity) and biotic (bacterial and algal abundances) factors on assimilation rates of bacteria by nematodes. In order to assess simultaneously bacteria and algal assimilation rates, algal abundances were modified adding ¹³C pre-enriched Navicula phyllepta. Assimilation rate was significantly lower at 5°C; moreover, general trend shows a prominent temperature effect with an optimum around 30°C. Assimilation at salinity 18 was not significantly different from the assimilation at salinity 31. Assimilation was higher under light conditions than in the dark. Above 10⁹ bacteria ml⁻¹, assimilation of bacteria remained unaffected by bacterial abundance. However, assimilation of algae increased with the algal concentration. Nematode kept feeding under conditions of stress, which are typical of the surficial sediment habitat and they appeared to be principally dependent on the algal resource.     

Microbial activity and carbon, nitrogen, and phosphorus content in a subtropical seagrass estuary (Florida Bay): evidence for limited bacterial use of seagrass production

Bacterial abundance, production, and extracellular enzyme activity were determined in the shallow water column, in the epiphytic community of Thalassia testudinum, and at the sediment surface along with total carbon, nitrogen, and phosphorus in Florida Bay, a subtropical seagrass estuary. Data were statistically reduced by principle components analysis (PCA) and multidimensional scaling and related to T. testudinum leaf total phosphorus content and phytoplankton biomass. Each zone (i.e., pelagic, epiphytic, and surface sediment community) was significantly dissimilar to each other (Global R = 0.65). Pelagic aminopeptidase and sum of carbon hydrolytic enzyme (esterase, peptidase, and α- and β-glucosidase) activities ranged from 8 to 284 mg N m⁻² day⁻¹ and 113–1,671 mg C m⁻² day⁻¹, respectively, and were 1–3 orders of magnitude higher than epiphytic and sediment surface activities. Due to the phosphorus-limited nature of Florida Bay, alkaline phosphatase activity was similar between pelagic (51–710 mg P m⁻² day⁻¹) and sediment (77–224 mg P m⁻² day⁻¹) zones but lower in the epiphytes (1.1–5.2 mg P m⁻² day⁻¹). Total (and/or organic) C (111–311 g C m⁻²), N (9.4–27.2 g N m⁻²), and P (212–1,623 mg P m⁻²) content were the highest in the sediment surface and typically the lowest in the seagrass epiphytes, ranging from 0.6 to 8.7 g C m⁻², 0.02–0.99 g N m⁻², and 0.5–43.5 mg P m⁻². Unlike nutrient content and enzyme activities, bacterial production was highest in the epiphytes (8.0–235.1 mg C m⁻² day⁻¹) and sediment surface (11.5–233.2 mg C m⁻² day⁻¹) and low in the water column (1.6–85.6 mg C m⁻² day⁻¹). At an assumed 50% bacterial growth efficiency, for example, extracellular enzyme hydrolysis could supply 1.8 and 69% of epiphytic and sediment bacteria carbon demand, respectively, while pelagic bacteria could fulfill their carbon demand completely by enzyme-hydrolyzable organic matter. Similarly, previously measured T. testudinum extracellular photosynthetic carbon exudation rates could not satisfy epiphytic and sediment surface bacterial carbon demand, suggesting that epiphytic algae and microphytobenthos might provide usable substrates to support high benthic bacterial production rates. PCA revealed that T. testudinum nutrient content was related positively to epiphytic nutrient content and carbon hydrolase activity in the sediment, but unrelated to pelagic variables. Phytoplankton biomass correlated positively with all pelagic components and sediment aminopeptidase activity but negatively with epiphytic alkaline phosphatase activity. In conclusion, seagrass production and nutrient content was unrelated to pelagic bacteria activity, but did influence extracellular enzyme hydrolysis at the sediment surface and in the epiphytes. This study suggests that seagrass-derived organic matter is of secondary importance in Florida Bay and that bacteria rely primarily on algal/cyanobacteria production. Pelagic bacteria seem coupled to phytoplankton, while the benthic community appears supported by epiphytic and/or microphytobenthos production.     

Herbivores enable plant survival under nutrient limited conditions in a model grazing system

We make a theoretical study of nitrogen cycling in a model of a grazing system with five compartments. The rates of uptake of nutrient by plants and herbivores are allowed nonlinear forms which involve no a priori assumptions about whether the system is subject to top-down or bottom-up control. We derive a method of piecewise linear approximation which allows analytical study of the system. We then use this method to investigate the properties of the equilibrium states of the system, and in particular whether the system favours donor- or recipient-control, the grazing optimization problem, and the potential benefits of herbivory to plant growth. We are able to generalise our results to all uptake functions of the same qualitative class as those considered, and to show that in general the system will tend to a stable equilibrium state of donor-controlled herbivory. In this model, the presence of the ‘right’ class of herbivore is not only beneficial to plant growth in certain circumstances, but can be essential to their survival, allowing plants to co-exist with herbivores under conditions in which they would be unable to survive alone.     

Mechanisms to initiate a Heterosigma akashiwo red tide in Osaka bay

The ecological role of diel vertical migration of Heterosigma akashiwo Hada to initiate red tide was investigated in Tanigawa Fishing Port and Sano Harbor, Osaka Bay, Japan during red tide seasons in 1979 and 1980. This species migrated toward the surface early in the morning at a velocity of 1.0 to 1.3 m h^-1. Downward migration was found in the afternoon, and more than 2.0×10³ cells ml^-1 aggregated in the bottom layer at night. The upward migration started before sunrise and downward shifting occurred prior to sunset. The movement is presumably associated with circadian rhythm, which is known as one of the biological periodicities. H. akashiwo crossed steep temperature and salinity gradients (6.5°C and 5.7 S) during the diel vertical migration. High values of particulate organic carbon and nitrogen concentrations were obtained in dialysis bags suspended in situ at identical layers with high cell concentration, while the values for surface and bottom bags were comparatively low. The results reveal that H. akashiwo migrates toward the sea surface to carry out photosynthesis effectively, and to the bottom to utilize nutrients efficiently.     

Pigeon homing: a comparison between groups raised under different conditions

Summary The homing ability of a group of pigeons raised under conditions of continuous exposure to windborne information was compared to that of another group subjected to exposure to winds only during the time spent in pre-test training flights. The results of release experiments at sites that were unfamiliar to the pigeons show that both bird groups, which had been made temporarily anosmic, had impaired initial homeward orientation and homing ability. These results, which do not entirely concur with the recent findings of Wiltschko and his coworkers, show that the raising and training procedures we used do not influence the nature of the cues used in pigeon homing. If the exposure of birds to wind-borne information is reduced, this does not bring into play any effective non-olfactory mechanisms of navigation; it simply hinders the development of the olfactory map and impairs the homing ability. Offprint requests to: S. Benvenuti     

Diet of juvenile green turtles (<Emphasis Type="Italic">Chelonia mydas</Emphasis>) associating with artisanal fishing traps in a subtropical estuary in Brazil

The diet of 50 juvenile green turtles Chelonia mydas live-captured incidentally by fixed fishing traps between January and June 2009 in Cananéia Estuarine–Lagoon complex, Brazil, was studied through analysis of esophageal lavage samples. Green turtles consumed an omnivorous diet, with 18 food components identified and grouped into 4 categories as follows: terrestrial plants, algae, invertebrates, and seagrass. Black mangrove leaves were of the greatest importance to diet. Turtles incidentally get into fixed traps probably because these devices are located on mangrove margins, where they forage. The additional foods suggest that green turtles also feed opportunistically on material adhered to the trap structure and/or on items that cross into its interior. Green turtle diet in estuarine environments appears to be determined by the availability of food components, with some selectivity toward items of apparently greater nutritional value.     

Turbulence investigation in the roughness sub-layer of a near wall flow

The turbulence behaviour along a wall roughened by pyramidal elements was analysed in the region extending from the apex of the roughness elements up to the external limit of the roughness sub-layer. The data used for the analysis were obtained by particle image velocimetry technique. The rough wall turbulent boundary layer flow is characterized by a relatively low Reynolds number. All the results on the rough wall were compared with data referring to the canonical flow on a smooth wall turbulent boundary layer. Mean values and turbulence quantities for the two flows collapse when approaching the external limit of the roughness sublayer. The quadrant analysis of the Reynolds shear stress, in the region near the surface, shows that the contribution of the sweep motions is about equivalent for the two flows (except for wall distances lower than 40 viscous units). The contribution of the ejection motions appears to be more important over the smooth wall than over the rough wall with increasing differences approaching the wall. The probability density functions of the streamwise fluctuating velocity field for the rough wall case appear to be positively skewed in the zone very close to the pyramid apex, in contrast with the behavior observed for the smooth wall case at corresponding distances from the wall. The integral and Taylor scales for the rough wall case appear to be strongly reduced by the presence of the roughness, while the Kolmogorov microscale shows higher values.     

海洋赤潮藻球形棕囊藻在氮磷富营养下的细胞增殖

利用常见海洋赤潮微藻球形棕囊藻(Phaeocystis globosa)为试验研究材料,以舵海洋微藻营养液为对照(1P1N:磷质量浓度为5×10-3g·L-1.氮质量浓度为75×10-3g·L-1),设置3组富磷和富氮营养处理(3P1N:磷质量浓度为15×10-3 g·L-1,氮质量浓度为75×10-3 g·L-1;1P3N:磷质量浓度为5××10-3 g·L-1,氮质量浓度为225×10-3 g·L-1;3P3N:磷质量浓度为15××10-3 g·L-1,氮质量浓度为225×10-3 g·L-1),利用细胞记数和叶绿素荧光测定等方法研究了藻细胞在不同富磷和富氮条件的增殖情况.结果显示,不同浓度磷和氮营养下的藻体荧光值变化在试验周期内均呈现"S"型曲线,表明藻细胞的生长经历缓慢期,快速期和平缓期3个阶段;同时,不同的富磷和富氮营养条件对球形棕囊藻的叶绿素荧光值有一定的影响,其中在对照1P1N下的藻体荧光值最低,在试验结束时(第10天)只有850 μg·L-1,而在3P1N,1P3N和3P3N条件下的藻体荧光值均达到900 μg·L-1以上,显著高于1P1N下的藻体荧光值,表明富磷和富氮营养可以促进藻细胞的生长增殖,但在试验设置的不同富磷和富氮营养下的藻体荧光值之间没有显著的差异.就不同磷和氮营养条件下的藻最大比生长速率而言,3P3N和3P1N条件下的最大,均达到0.77 d-1,明显高于1P1N和1P3N条件下的藻最大比生长速率(分别只有0.70 d-1和0.69 d-1).此外,试验结束时细胞密度的变化趋势与藻体荧光值相似,富磷和富氮营养条件下的细胞密度显著高于1P1N下的细胞密度,而富磷和富氮营养条件下的细胞密度间也不存在显著的差异.研究结果揭示,水体中的高磷和高氮营养浓度是导致藻细胞大量快速增殖的一个主要因素,而利用叶绿素荧光来测定藻细胞增殖是一种快速、简便,灵敏和可靠的方法,可在今后赤潮监测过程中多加利用,以能及时、准确地预测预报赤潮爆发.从而减少其对环境和经济的影响.