AFLP analysis as biomarker of exposure to organic and inorganic genotoxic substances in plants

In recent years several plant species have been in use as bioindicators and several tests have been developed to evaluate the toxicity of environmental pollutants in vegetal organisms. In the present paper Arabidopsis thaliana (L.) Heynh. (ecotype Wassilewskija) was used as bioindicators of two genotoxic substances: potassium dichromate and dihydrophenanthrene. Inhibition of seed germination was observed with both pollutants. AFLP analysis (i) indicated that both substances are genotoxic, (ii) showed that dihydrophenanthrene induces DNA changes in different target sequences than potassium dichromate, (iii) quantified the genotoxic effect using cluster analysis by comparing DNA from treated plants with that of control plants. On the basis of these considerations we suggest that AFLP method is a powerful tool for measuring qualitative and quantitative genotoxic activity due to environmental pollutants. AFLP method can be applied to a wide range of bioindicator organisms and may become a universal methodology to identify target genes for specific genotoxic agents. This could open up possibilities for designing specifically targeted assays and new approaches to risk assessment.     

Long-range transport and global fractionation of POPs: insights from multimedia modeling studies

The long-range transport of persistent organic pollutants (POPs) is investigated with two multimedia box models of the global system. ChemRange is a purely evaluative, one-dimensional steady-state (level III) model; CliMoChem is a two-dimensional model with different temperatures, land/water ratios and vegetation types in different latitudinal zones. Model results are presented for three case studies: (i) the effect of atmospheric aerosol particles on the long-range transport of POPs, (ii) the effect of oceanic deposition on the long-range transport of different PCB congeners, (iii) the global fractionation of different PCB congeners. The model results for these case studies show: (i) the low atmospheric half-lives estimated for several organochlorine pesticides are likely to be inconsistent with the observed long-range transport of these compounds; (ii) export to the deep sea reduces the potential for long-range transport of highly hydrophobic compounds (but does not remove these chemicals from the biosphere); (iii) there are different meanings of the term global fractionation that refer to different aspects of the fractionation process and need to be distinguished. The case-study results further indicate that the influences of varying environmental conditions on the physicochemical properties and the degradation rate constants of POPs need to be determined.     

A new moss biomonitoring method for detecting sources of small scale pollution

A new simple method is proposed for identifying sources of small scale pollution, by determining the tissue concentrations of pollutants in terrestrial mosses. The method is based on spatial characterization of the processes that generate accumulation of pollutants in these organisms. The steps involved in implementing and applying the method are: (i) obtaining data on pollutants in moss samples collected at least at 35 pairs of sampling sites (SS) separated by 1 km distance; (ii) study of the distribution of the differences in concentration between the pairs of SS, eliminating pairs affected by foci that generate small scale processes; (iii) characterization of the resulting normal distributions and calculation, for different levels of significance, of the probability of a value lying within these distributions, and (iv) application of the calculated quantiles to data corresponding to the differences in concentrations between pairs of SS in the vicinities of foci of small scale pollution, to determine which elements can be considered as pollutants. Given the small number of data required once the distribution of the differences has been established, the method is an inexpensive, efficient way of establishing the probability that a pollutant is being emitted from a particular source. The method is very useful for verifying the results of pollution inventories, evaluating new technologies and improving the design of regional networks for biomonitoring of air quality with terrestrial mosses.     

Cholinesterase characterization and effects of the environmental contaminants chlorpyrifos and carbofuran on two species of marine crabs,Carcinus maenas and Pachygrapsus marmoratus

Among the most frequent targets for toxic effects of modern pesticides, namely organophosphates and carbamates, one may find cholinesterases (ChEs). ChEs exist in a wide variety of animals and have been used actively to discriminate among the environmental effects of different pollutant groups, including the aforementioned pesticides. This study had three purposes, namely (i) identifying the ChE forms present in tissues (eyes and walking legs muscle) of two crab species, Carcinus maenas and Pachygrapsus marmoratus; to (ii) determine the in vitro toxicological effects, and (iii) compare the sensitivity of such enzymatic forms towards commonly used anti-ChE pesticides, namely the organophosphate chlorpyrifos and the carbamate carbofuran. Our results showed that there was not a clear preference for any of the tested substrates in any of the tissues from both species. Furthermore, the ChE activity was almost completely suppressed following incubation with eserine and with the specific inhibitor BW284C51 in all tissues from both species. In vitro exposure to chlorpyrifos promoted a significant decrease in ChE activity in both species. Furthermore, the ChE activity was completely suppressed following incubation with carbofuran and chlorpyrifos. These results suggest that the major ChE forms present in tissues of both crab species show intermediate structural properties and activity patterns, halfway between classic acetylcholinesterase and pseudocholinesterases. However, the sensitivity of the found forms towards ChE inhibitors was established, and the responsiveness of such forms towards common anti-ChE chemicals was established. Both tested species seem to be promising test organisms to be used in marine and coastal scenarios of putative contaminations by anti-ChE chemicals, considering the here reported patterns of response.

     

Gating in grapevine: relationship between application of the fungicide fludioxonil and circadian rhythm on photosynthesis

The aim of this study was to determine the impact of the fludioxonil (fdx) fungicide on the diurnal fluctuation in grapevine photosynthesis. Therefore, fdx treatment was performed at the end of flowering, at 8 am, 12 am or 7 pm. The study was performed in experimental field and several photosynthesis parameters were followed one day after treatment. Morning fdx treatment induced (i) a significant and simultaneous drop of both photosynthesis (Pn) and stomatal conductance between 8 am and 4 pm and (ii) an increase of intercellular CO₂ concentration when compared to control plants. On the contrary, evening fdx treatment did not affect Pn whereas midday treatment caused Pn increase after 4 pm. These data suggest that (i) morning fdx treatment results in a non-stomatal limitation of Pn, (ii) midday treatment is more suitable to treat grapevine with fdx and (iii) a phenomenon of gating was noticed.     

Oxidative dealkylation of five phenylurea herbicides by the fungus CunninghamellaechinulataThaxter

Microorganisms isolated from soil degrade phenylurea herbicides via two major pathways: (i) direct hydrolysis by an amidase leading to N,O-dimethylhydroxylamine, CO₂ and aniline¹ and (ii) N-dealkylation, which has been described as the first step in urea herbicide degradation by a variety of organisms including mammals, plants and microbial systems (for a review see reference 2).Until now no attempts have been made to investigate the mechanism of N-demethylation of substituted ureas in soil microorganisms, due to the instability of the N-hydroxymethyl intermediates. This reaction mechanism has only been described in detail in green plants^3–5. As among soil fungi Phycomycetes are known to demethylate phenylurea herbicides^6,7 this study has been made to identify intermediate hydroxymethyl compounds from urea herbicides, when incubated with the fungus $\text{Cunninghamella echinulata Thaxter}$.     

Estimation of plant sampling uncertainty: an example based on chemical analysis of moss samples

In order to estimate the level of uncertainty arising from sampling, 54 samples (primary and duplicate) of the moss species Pleurozium schreberi (Brid.) Mitt. were collected within three forested areas (Wierna Rzeka, Piaski, Posłowice Range) in the Holy Cross Mountains (south-central Poland). During the fieldwork, each primary sample composed of 8 to 10 increments (subsamples) was taken over an area of 10 m² whereas duplicate samples were collected in the same way at a distance of 1–2 m. Subsequently, all samples were triple rinsed with deionized water, dried, milled, and digested (8 mL HNO₃ (1:1) + 1 mL 30 % H₂O₂) in a closed microwave system Multiwave 3000. The prepared solutions were analyzed twice for Cu, Fe, Mn, and Zn using FAAS and GFAAS techniques. All datasets were checked for normality and for normally distributed elements (Cu from Piaski, Zn from Posłowice, Fe, Zn from Wierna Rzeka). The sampling uncertainty was computed with (i) classical ANOVA, (ii) classical RANOVA, (iii) modified RANOVA, and (iv) range statistics. For the remaining elements, the sampling uncertainty was calculated with traditional and/or modified RANOVA (if the amount of outliers did not exceed 10 %) or classical ANOVA after Box-Cox transformation (if the amount of outliers exceeded 10 %). The highest concentrations of all elements were found in moss samples from Piaski, whereas the sampling uncertainty calculated with different statistical methods ranged from 4.1 to 22 %.

     

Compound specific carbon and hydrogen stable isotope analyses of volatile organic compounds in various emissions of combustion processes

This study presents carbon (δ¹³C) and hydrogen (δD) isotope values of volatile organic compounds (VOCs) in various emission sources using thermal desorption-gas chromatography-isotope ratio mass spectrometry (TD-GC-irMS). The investigated VOCs ranged from C6 to C10. Samples were taken from (i) car exhaust emissions as well as from plant combustion experiments of (ii) various C3 and (iii) various C4 plants. We found significant differences in δ values of analysed VOCs between these sources, e.g. δ¹³C of benzene ranged between (i) −21.7 ± 0.2‰, (ii) −27.6 ± 1.6‰ and (iii) −16.3 ± 2.2‰, respectively and δD of benzene ranged between (i) −73 ± 13‰, (ii) −111 ± 10‰ and (iii) −70 ± 24‰, respectively. Results of VOCs present in investigated emission sources were compared to values from the literature (aluminium refinery emission). All source groups could be clearly distinguished using the dual approach of δ¹³C and δD analysis. The results of this study indicate that the correlation of compound specific carbon and hydrogen isotope analysis provides the potential for future research to trace the fate and to determine the origin of VOCs in the atmosphere using thermal desorption compound specific isotope analysis.     

Compound specific carbon and hydrogen stable isotope analyses of volatile organic compounds in various emissions of combustion processes

This study presents carbon (δ¹³C) and hydrogen (δD) isotope values of volatile organic compounds (VOCs) in various emission sources using thermal desorption–gas chromatography–isotope ratio mass spectrometry (TD–GC–irMS). The investigated VOCs ranged from C6 to C10. Samples were taken from (i) car exhaust emissions as well as from plant combustion experiments of (ii) various C3 and (iii) various C4 plants. We found significant differences in δ values of analysed VOCs between these sources, e.g. δ¹³C of benzene ranged between (i) −21.7 ± 0.2‰, (ii) −27.6 ± 1.6‰ and (iii) −16.3 ± 2.2‰, respectively and δD of benzene ranged between (i) −73 ± 13‰, (ii) −111 ± 10‰ and (iii) −70 ± 24‰, respectively. Results of VOCs present in investigated emission sources were compared to values from the literature (aluminium refinery emission). All source groups could be clearly distinguished using the dual approach of δ¹³C and δD analysis. The results of this study indicate that the correlation of compound specific carbon and hydrogen isotope analysis provides the potential for future research to trace the fate and to determine the origin of VOCs in the atmosphere using thermal desorption compound specific isotope analysis.     

Arsenic species in ecosystems affected by arsenic-rich spring water near an abandoned mine in Korea

The objectives of this study were to quantitatively estimate the distribution of arsenic with its speciation and to identify potential pathways for transformation of arsenic species from samples of water, sediments, and plants in the ecosystem affected by the Cheongog Spring, where As(V) concentration reached levels up to 0.270 mg L⁻¹. After flowing about 100 m downstream, the arsenic level showed a marked reduction to 0.044 mg L⁻¹ (about 84% removal) without noticeable changes in major water chemistry. The field study and laboratory hydroponic experiments with the dominant emergent plants along the creek (water dropwort and thunbergian smartweed) indicated that arsenic distribution, reduction, and speciation appear to be controlled by, (i) sorption onto stream sediments in exchangeable fractions, (ii) bioaccumulation by and possible release from emergent plants, and (iii) transformation of As(V) to As(III) and organic species through biological activities.     

Comparison of Microbial Pyrene and Benzo[a]Pyrene Mineralization in Liquid Medium,Soil Slurry,and Soil

The microbial degradation of ¹⁴C-pyrene and ¹⁴C-benzo[a]pyrene by a bacterial mixed culture was studied within a mixture of the PAHs phenanthrene, anthracene, pyrene, fluoranthene, and benzo[a]pyrene as sole carbon source in the different culture systems: (i) liquid medium, (ii) soil slurry (surface and grinding influence), and (iii) soil. The fate of these two labeled compounds was followed in these systems with an emphasis on mineralization to carbon dioxide, extractability, and adsorption to humic materials and formation of unextractable residual. Mineralization showed the most obvious differences: soil slurries achieved the best results both concerning the extent of mineralization and the time required. The highest extent of pyrene mineralization (54% within 21 days) was observed in soil slurries; in liquid media, pyrene mineralization was slower, but reached approximately the same extent (54% in 150 days); in soils, mineralization reached only 36% of added pyrene after 160 days. Benzo[a]pyrene was mineralized in a mixture of PAHs in soil slurries to an extent of 34% within 70 days, whereas mineralization in liquid medium and soil occurred in the range of 5% (70 days). Mineralization of benzo[a]pyrene in sand slurries was lower compared to soil slurries (19% in sand slurries vs. 32% in soil slurries within 50 days).     

Ascorbic acid, β-carotene,sugars, phenols,and heavy metals in sweet potatoes grown in soil fertilized with municipal sewage sludge

Municipal sewage sludge (MSS) used for land farming typically contains heavy metals that might impact crop quality and human health. A completely randomized experimental design with three treatments (six replicates each) was used to monitor the impact of mixing native soil with MSS or yard waste (YW) mixed with MSS (YW +MSS) on: i) sweet potato yield and quality; ii) concentration of seven heavy metals (Cd, Cr, Mo, Cu, Zn, Pb, and Ni) in sweet potato plant parts (edible roots, leaves, stem, and feeder roots); and iii) concentrations of ascorbic acid, total phenols, free sugars, and β-carotene in sweet potato edible roots at harvest. Soil samples were collected and analyzed for total and extractable metals using two extraction procedures, concentrated nitric acid (to extract total metals from soil) as well as CaCl₂ solution (to extract soluble metals in soil that are available to plants), respectively. Elemental analyses were performed using inductively coupled plasma mass spectrometry (ICP-MS). Overall, plant available metals were greater in soils amended with MSS compared to control plots. Concentration of Pb was greater in YW than MSS amendments. Total concentrations of Pb, Ni, and Cr were greater in plants grown in MSS+YW treatments compared to control plants. MSS+YW treatments increased sweet potato yield, ascorbic acid, soluble sugars, and phenols in edible roots by 53, 28, 27, and 48%, respectively compared to plants grown in native soil. B-carotene concentration (157.5 μg g^?1 fresh weight) was greater in the roots of plants grown in MSS compared to roots of plants grown in MSS+YW treatments (99.9 μg g^?1 fresh weight). Concentration of heavy metals in MSS-amended soil and in sweet potato roots were below their respective permissible limits.     

Phytoremediation of contaminated soils and groundwater: lessons from the field

Background, aim, and scope

The use of plants and associated microorganisms to remove, contain, inactivate, or degrade harmful environmental contaminants (generally termed phytoremediation) and to revitalize contaminated sites is gaining more and more attention. In this review, prerequisites for a successful remediation will be discussed. The performance of phytoremediation as an environmental remediation technology indeed depends on several factors including the extent of soil contamination, the availability and accessibility of contaminants for rhizosphere microorganisms and uptake into roots (bioavailability), and the ability of the plant and its associated microorganisms to intercept, absorb, accumulate, and/or degrade the contaminants. The main aim is to provide an overview of existing field experience in Europe concerning the use of plants and their associated microorganisms whether or not combined with amendments for the revitalization or remediation of contaminated soils and undeep groundwater. Contaminations with trace elements (except radionuclides) and organics will be considered. Because remediation with transgenic organisms is largely untested in the field, this topic is not covered in this review. Brief attention will be paid to the economical aspects, use, and processing of the biomass.

Conclusions and perspectives

It is clear that in spite of a growing public and commercial interest and the success of several pilot studies and field scale applications more fundamental research still is needed to better exploit the metabolic diversity of the plants themselves, but also to better understand the complex interactions between contaminants, soil, plant roots, and microorganisms (bacteria and mycorrhiza) in the rhizosphere. Further, more data are still needed to quantify the underlying economics, as a support for public acceptance and last but not least to convince policy makers and stakeholders (who are not very familiar with such techniques).     

Pollution status and risk assessment of trace elements in Portuguese water,soils, sediments,and associated biota: a trend analysis from the 80s to 2021

Pollution of water bodies and sediments/soils by trace elements remains a global threat and a serious environmental hazard to biodiversity and human’s health. Globalization and industrialization resulted in the increase and availability of these substances in the environment posing unpredictable adverse effects to living organisms. To determine pollution status and risk contamination by trace elements, data available in the literature of the last 40 years on trace elements occurrence in three environmental matrices (water bodies, sediments/soils, and biota) from Continental Portugal were collected (about 90 studies). Data were compared to water and sediment quality guidelines to assess potential ecological risks. Most environmentally relevant hazardous elements include Zn, Cu, Cd, Pb, and As. Various studies found trace elements at levels higher than those considered safe by environmental guidelines. In surface waters, Al, Zn, Se, and Ag were found above aquatic life limits in about 60% of the reviewed papers, while Cu, Zn, and As exceed those values in more than 60% of mining waters. Hg and Cd in sediments from mining areas exceeded aquatic life limits and potential ecological risk showed extremely high risk for most of the elements. The data compiled in this review is very heterogenous, varying in terms of sampling schemes, trace elements analysed, and spatiotemporal settings. This heterogenicity leads to data differences that make meaningful comparisons difficult. Nevertheless, the compilation of scattered environmental spatial and temporal trace elements data, of either natural sources or human activity as well as the ultimate effect on biological systems, is of the upmost importance to broaden its knowledge, risk assessment, and implementation of mitigation measures.

     

Air dispersion of heavy metals in the vicinity of the As-Sb-Tl abounded mine and responsiveness of moss as a biomonitoring media in small-scale investigations

A systematic study was carried out to investigate air deposition and to explore the natural distribution and enrichment (contamination) with trace elements in the small area (cca. 13 km²) of an antimony-arsenic-thallium mineralization outcrop at an abandoned mine “Allchar.” The mine is located on the northwestern part of Ko?uf Mount, Republic of Macedonia. The locality of Allchar is unique in its mineral composition; besides a very intriguing mineral, lorandite, there are 45 other minerals, some of which are rare. The distribution of 53 elements (with special attention to As, Sb, and Tl) were detected in 69 moss samples from eight various species collected from this area. Moss samples were analyzed following microwave digestion by inductively coupled plasma–mass spectrometry and inductively coupled plasma–atomic emission spectrometry. It was found that the atmospheric deposition for As in the moss samples on or around the Allchar mine is >6.5 times higher and for Tl is 19 times higher compared to values for the samples from the rest of the Allchar area. By the application of multivariate cluster and R-mode factor analyses (FA), five geochemical associations were determined. Cluster and R-mode FA were used to identify and characterize element associations, and five associations of elements were determined by the method of multivariate statistics. F1 (Co, Cr, Fe, Sc, Li, V, Ga, Y, Ni, Mn, Al, La-Lu, Cu, Ge, Be, Bi, and Hf); F2 (As, Tl, Sb, and Mg); F3 (Rb, Cs, and Mo); F4 (Sr, Ba, Hf, Zr, La-Lu, and Bi), and F5 (Cd, Zn, Ag, and Cu).     

Effects of sterile storage,cation saturation and substrate additions on the degradability and extractability of nonylphenol and phenanthrene in soil

The main objective of this study was to determine the effects of long-term abiotic processes during aging of organic pollutants in soil on their microbial degradability and formation of non-extractable residues. The specific aims of our study were to investigate how the fate of p353-nonylphenol (NP) and phenanthrene (Phe) in soils might be affected by: (i) saturation of soil by cations with different valency (Na⁺, Ca²⁺ or Al³⁺), (ii) addition of organic substrate (wood flour) during incubation period and (iii) different soil moisture levels.     

The impact of climate change on three indicator Galliformes species in the northern highlands of Pakistan

The rise in global temperature is one of the main threats of extinction to many vulnerable species by the twenty-first century. The negative impacts of climate change on the northern highlands of Pakistan (NHP) could change the species composition. Range shifts and range reduction in the forested landscapes will dramatically affect the distribution of forest-dwelling species, including the Galliformes (ground birds). Three Galliformes (e.g., Lophophorus impejanus, Pucrasia macrolopha, and Tragopan melanocephalus) are indicator species of the environment and currently distributed in NHP. For this study, we used Maximum Entropy Model (MaxEnt) to simulate the current (average for 1960–1990) and future (in 2050 and 2070) distributions of the species using three General Circulation Models (GCMs) and two climate change scenarios, i.e., RCP4.5 (moderate carbon emission scenario) and RCP8.5 (peak carbon emission scenario). Our results indicated that (i) under all three climate scenarios, species distribution was predicted to both reduce and shift towards higher altitudes. (ii) Across the provinces in the NHP, the species were predicted to average lose around one-third (35%) in 2050 and one-half (47%) by 2070 of the current suitable habitat. (iii) The maximum area of climate refugia was projected between the altitudinal range of 2000 to 4000 m and predicted to shift towards higher altitudes primarily?>?3000 m in the future. Our results help inform management plans and conservation strategies for mitigating the impacts of climate change on three indicator Galliforms species in the NHP.

     

Bivalve mollusks in metal pollution studies: From bioaccumulation to biomonitoring

Contemporary environmental challenges have emphasized the need to critically assess the use of bivalve mollusks in chemical monitoring (identification and quantification of pollutants) and biomonitoring (estimation of environmental quality). Many authors, however, have considered these approaches within a single context, i.e., as a means of chemical (e.g. metal) monitoring. Bivalves are able to accumulate substantial amounts of metals from ambient water, but evidence for the drastic effects of accumulated metals (e.g. as a TBT-induced shell deformation and imposex) on the health of bivalves has not been documented. Metal bioaccumulation is a key tool in biomonitoring; bioavailability, bioaccumulation, and toxicity of various metals in relation to bivalves are described in some detail including the development of biodynamic metal bioaccumulation model. Measuring metal in the whole-body or the tissue of bivalves themselves does not accurately represent true contamination levels in the environment; these data are critical for our understanding of contaminant trends at sampling sites. Only rarely has metal bioaccumulation been considered in combination with data on metal concentrations in parts of the ecosystem, observation of biomarkers and environmental parameters. Sclerochemistry is in its infancy and cannot be reliably used to provide insights into the pollution history recorded in shells. Alteration processes and mineral crystallization on the inner shell surface are presented here as a perspective tool for environmental studies.     

Physiological and Biochemical Effects of Atmospheric Oxidants on Plants

Photochemically produced oxidants in the atmosphere cause injury to plants primarily through inhibition of basic metabolic processes. Plants vary in their response to the oxidants and this variation must be dependent in part on the variation in metabolic activity with age or environmental conditions for growth, to a large degree not understood. Data are presented in this paper to show: (1) The changes in permeability of leaf tissue to exogenous substrate and in catabolic utilization of this substrate after exposure of plants to ozone but before visible symptoms appear; (2) The change in leaf carbohydrates as a result of exposure to ozone; (3) The protective effect of red light (700 mμ) during exposure of bean plants to peroxyacetyl nitrate (PAN); (4) The correlation of sulfhydryl (SH) content in bean leaf tissue with age of plants and light regime; and (5) Effect of light regime and age of plants on incorporation of C¹⁴ from C¹⁴-PAN by bean leaf tissue.     

Microplastics in aquatic environment: characterization,ecotoxicological effect,implications for ecosystems and developments in South Africa

Microplastics are small-size plastic piece scales (particles <?5 mm) in sediments and waters which interact with environment and organisms by various means. Microplastics are becoming a universal ecological concern since they may be a source of hazardous chemicals to marine organisms and environments. Recent research suggests microplastics could enable the transfer of hydrophobic aquatic pollutants or chemical additives to biota. Even though microplastic presence and interactions are recently being detected in marine and freshwater systems, the fate of microplastics is still very poorly understood. This literature review is a summary of the sources and transport of microplastics, their interactions with toxic chemicals and the methodologies for chemical quantification and characterization of microplastics. The environmental outcome and impact of microplastics in wastewater treatment plants were assessed as well as the trends and update on microplastic research in the South African aquatic ecosystem.