Crustacean habitat potential mapping in a tidal flat using remote sensing and GIS

To make a macrofaunal (crustacean) habitat potential map, the spatial distribution of ecological variables in the Hwangdo tidal flat, Korea, was explored. Spatial variables were mapped using remote sensing and a geographic information system (GIS) combined with field observations. A frequency ratio (FR) and logistic regression (LR) model were employed to map the macrofauna potential area for the Ilyoplax dentimerosa, a crustacean species. Spatial variables affecting the tidal macrofauna distribution were selected based on abundance and biomass and used within a spatial database derived from remotely sensed data of various types of sensors. The spatial variables included the intertidal digital elevation model (DEM), slope, distance from a tidal channel, tidal channel density, surface sediment facies, spectral reflectance of the near infrared (NIR) bands and the tidal exposure duration. The relation between the I. dentimerosa and each spatial variable was calculated using the FR and LR. The species was randomly divided into a training set (70%) to analyse habitat potential using FR and LR and a test set (30%) to validate the predicted habitat potential map. The relations were overlaid to produce a habitat potential map with the species potential index (SPI) value for each pixel. The potential habitat maps were compared with the surveyed habitat locations such as validation data set. The comparison results showed that the LR model (accuracy is 85.28%) is better in prediction than the FR (accuracy is 78.96%) model. The performance of models gave satisfactory accuracies. The LR provides the quantitative influence of variables on a potential habitat of species; otherwise, the FR shows the quantitative influence of a class in each variable. The combination of a GIS-based frequency ratio and logistic regression models and remote sensing with field observations is an effective method to determine locations favorable for macrofaunal species occurrences in a tidal flat.     

Multiscale advanced raster map analysis system: Definition, design and development

This paper brings together a multidisciplinary initiative to develop advanced statistical and computational techniques for analyzing, assessing, and extracting information from raster maps. This information will provide a rigorous foundation to address a wide range of applications including disease mapping, emerging infectious diseases, landscape ecological assessment, land cover trends and change detection, watershed assessment, and map accuracy assessment. It will develop an advanced map analysis system that integrates these techniques with an advanced visualization toolbox, and use the system to conduct large case studies using rich sets of raster data, primarily from remotely sensed imagery. As a result, it will be possible to study and evaluate raster maps of societal, ecological, and environmental variables to facilitate quantitative characterization and comparative analysis of geospatial trends, patterns, and phenomena. In addition to environmental and ecological studies, these techniques and tools can be used for policy decisions at national, state, and local levels, crisis management, and protection of infrastructure. Geospatial data form the foundation of an information-based society. Remote sensing has been a vastly under-utilized resource involving a multi-million dollar investment at the national levels. Even when utilized, the credibility has been at stake, largely because of lack of tools that can assess, visualize, and communicate accuracy and reliability in timely manner and at desired confidence levels. Consider an imminent 21st century scenario: What message does a multi-categorical map have about the large landscape it represents? And at what scale, and at what level of detail? Does the spatial pattern of the map reveal any societal, ecological, environmental condition of the landscape? And therefore can it be an indicator of change? How do you automate the assessment of the spatial structure and behavior of change to discover critical areas, hot spots, and their corridors? Is the map accurate? How accurate is it? How do you assess the accuracy of the map? How do we evaluate a temporal change map for change detection? What are the implications of the kind and amount of change and accuracy on what matters, whether climate change, carbon emission, water resources, urban sprawl, biodiversity, indicator species, human health, or early warning? And with what confidence? The proposed research initiative is expected to find answers to these questions and a few more that involve multi-categorical raster maps based on remote sensing and other geospatial data. It includes the development of techniques for map modeling and analysis using Markov Random Fields, geospatial statistics, accuracy assessment and change detection, upper echelons of surfaces, advanced computational techniques for geospatial data mining, and advanced visualization techniques.     

Spatial uncertainty analysis of population models

This paper describes an approach for conducting spatial uncertainty analysis of spatial population models, and illustrates the ecological consequences of spatial uncertainty for landscapes with different properties. Spatial population models typically simulate birth, death, and migration on an input map that describes habitat. Typically, only a single “reference” map is available, but we can imagine that a collection of other, slightly different, maps could be drawn to represent a particular species’ habitat. As a first approximation, our approach assumes that spatial uncertainty (i.e., the variation among values assigned to a location by such a collection of maps) is constrained by characteristics of the reference map, regardless of how the map was produced. Our approach produces lower levels of uncertainty than alternative methods used in landscape ecology because we condition our alternative landscapes on local properties of the reference map. Simulated spatial uncertainty was higher near the borders of patches. Consequently, average uncertainty was highest for reference maps with equal proportions of suitable and unsuitable habitat, and no spatial autocorrelation. We used two population viability models to evaluate the ecological consequences of spatial uncertainty for landscapes with different properties. Spatial uncertainty produced larger variation among predictions of a spatially explicit model than those of a spatially implicit model. Spatially explicit model predictions of final female population size varied most among landscapes with enough clustered habitat to allow persistence. In contrast, predictions of population growth rate varied most among landscapes with only enough clustered habitat to support a small population, i.e., near a spatially mediated extinction threshold. We conclude that spatial uncertainty has the greatest effect on persistence when the amount and arrangement of suitable habitat are such that habitat capacity is near the minimum required for persistence.     

Toward estimation of map accuracy without a probability test sample

The time and effort required of probability sampling for accuracy assessment of large-scale land cover maps often means that probability test samples are not collected. Yet, map usefulness is substantially reduced without reliable accuracy estimates. In this article, we introduce a method of estimating the accuracy of a classified map that does not utilize a test sample in the usual sense, but instead estimates the probability of correct classification for each map unit using only the classification rule and the map unit covariates. We argue that the method is an improvement over conventional estimators, though it does not eliminate the need for probability sampling. The method also provides a new and simple method of constructing accuracy maps. We illustrate some of problems associated with accuracy assessment of broad-scale land cover maps, and our method, with a set of nine Landsat Thematic Mapper satellite image-based land cover maps from Montana and Wyoming, USA.     

A regression tree-based method for integrating land-cover and land-use data collected at multiple scales

As data sets of multiple types and scales proliferate, it will be increasingly important to be able to flexibly combine them in ways that retain relevant information. A case in point is Amazonia, a large, data-poor region where most whole-basin data sets are limited to understanding land cover interpreted through a variety of remote sensing techniques and sensors. A growing body of work, however, indicates that the future state of much of Amazonia depends on the land use to which converted areas are put, but land use in the tropics is difficult to assess from remotely sensed data alone. An earlier paper developed new snapshots of agricultural land use in this region using a statistical fusion of satellite data and agricultural census data, an underutilized ancillary data source available across Amazonia. The creation of these land-use maps, which have the spatial detail of a satellite image and the attribute information of an agricultural census, required the development of a new statistical technique for merging data sets at different scales and of fundamentally different data types. Here we describe and assess this nonlinear technique, which reinterprets existing land cover classifications by determining what categories are most highly related to the polygon land-use data across the study area. Although developed for this region, the technique appears to hold broad promise for the systematic fusion of multiple data sets that are closely related but of different origins. The figures in the printed version of this article appear in black and white. Color figures are available from the author upon request.     

Remote sensing: Using the spatial domain

Objects in the terrestrial environment interact differentially with electromagnetic radiation according to their essential physical, chemical and biological properties. This differential interaction is manifest as variability in scattered radiation according to wavelength, location, time, geometries of illumination and observation and polarization. If the population of scattered radiation could be measured, then estimation of these essential properties would be straightforward. The only problem would be linking such estimates to environmental variables of interest. This review paper is divided into three parts. Part 1 is an overview of the attempts that have been made to sample the five domains of scattered radiation (spectral, spatial, temporal, geometrical, polarization) and then to use the results of this sampling to estimate environmental variables of interest. Part one highlights three issues: first, that relationships between remotely sensed data and environmental variables of interest are indirect; second, our ability to estimate these environmental variables is dependent upon our ability to capture a sound representation of variability in scattered radiation and third, a considerable portion of the useful information in remotely sensed images resides in the spatial domain (within the relations between the pixels in the image). This final point is developed in Part 2 that explores ways in which the spatial domain is utilized to describe spatial variation in remotely sensed and ground data; to design optimum sampling schemes for image data and ground data and to increase the accuracy with which remotely sensed data can be used to estimate both discontinuous and continuous variables. Part 3 outlines two specific uses of information in the spatial domain; first, to select an optimum spatial resolution and second, to inform an image classification.     

Survey methods for assessing land cover map accuracy

The increasing availability of digital photographic materials has fueled efforts by agencies and organizations to generate land cover maps for states, regions, and the United States as a whole. Regardless of the information sources and classification methods used, land cover maps are subject to numerous sources of error. In order to understand the quality of the information contained in these maps, it is desirable to generate statistically valid estimates of accuracy rates describing misclassification errors. We explored a full sample survey framework for creating accuracy assessment study designs that balance statistical and operational considerations in relation to study objectives for a regional assessment of GAP land cover maps. We focused not only on appropriate sample designs and estimation approaches, but on aspects of the data collection process, such as gaining cooperation of land owners and using pixel clusters as an observation unit. The approach was tested in a pilot study to assess the accuracy of Iowa GAP land cover maps. A stratified two-stage cluster sampling design addressed sample size requirements for land covers and the need for geographic spread while minimizing operational effort. Recruitment methods used for private land owners yielded high response rates, minimizing a source of nonresponse error. Collecting data for a 9-pixel cluster centered on the sampled pixel was simple to implement, and provided better information on rarer vegetation classes as well as substantial gains in precision relative to observing data at a single-pixel.     

The utility of earth observation technologies in understanding impacts of land reform in the eastern region of Zimbabwe

Land tenure and land policies influence the spatial variations of land use/cover (LULC) at any given time or place. Thus, it is important to evaluate the role of land tenure policies on land cover changes. In this study, we evaluate the utility of Landsat Thematic Mapper (TM) images in understanding the impacts of the 2000 fast track land reform (FTLR) policy on LULC in the eastern region, Zimbabwe. Landsat images for the year 1995, 2000, 2005 and 2011 were classified using traditional image classification techniques (i.e. the maximum likelihood (ML) classifier) in a geographic information system (GIS) environment. Results indicate that forested areas drastically decreased by approx. 30% between the year 2000 and 2005 (during and after the FTLR), while croplands marginally increased by (approx. 30%) the results further showed that slight increase in bare lands (degraded lands) and disturbed lands. The observed LULC changes after FTLR were mostly induced by human activities resulting from changes in land tenure. Overall, the findings of this study underscores the importance of remotely sensed data in assessing the impact of FTLR on forest resources for purposes of informed and sustainable forest management.     

Application of analytical hierarchy process and geographic information systems in land-use suitability evaluation: a case study of Dümrek village (Çanakkale,Turkey)

This study used both analytical hierarchy process (AHP) and geographic information systems (GIS) to make a land-use suitability analysis for the village of Dümrek, NW Turkey. Primarily, alternative land uses for agriculture, meadow–pasture and forest were determined along with criteria for these alternatives and a hierarchical structure was produced and used to determine the weights of the criteria. Spatial data were identified by means of GIS and calculations were made using the suitability values specified and weights obtained from AHP. Suitability maps were then produced for the above land use alternatives. Subsequently, a synthesized suitability map was formed from these maps. According to the weights specified by AHP, the order of land use preferences among the alternatives for rural development of Dümrek was agriculture, forest and meadow. The synthesized suitability map showed that the areas allocated for forest and agriculture were close to the present ratios of use; however, meadow land, which does not exist at present, should be allocated as a land use to constitute 12.5% of the study area. Achieving sustainability in land use is possible by planners and administrators considering results obtained from land suitability mapping studies at the stage of allocating land uses. The method applied in this research is considered useful when taking policy decisions covering the evaluation of rural land use, particularly for subunits of the state administration.     

Postfire stand structure in a semiarid savanna: cross-scale challenges estimating biomass.

Algorithms relating remotely sensed woody cover to biomass are often the basis for large-scale inventories of aboveground carbon stocks. However, these algorithms are commonly applied in a generic fashion without consideration of disturbances that might alter vegetation structure. We compared field and remote sensing estimates of woody biomass on savannas with contrasting disturbance (fire) histories and assessed potential errors in estimating woody biomass from cover without considering fire history. Field surveys quantified multilayer cover (MLC) of woody and succulent plants on sites experiencing wildfire in 1989 or 1994 and on nearby unburned (control) sites. Remote sensing estimates of the woody cover fraction (WCF) on burned and control sites were derived from contemporary (2005) dry-season Landsat Thematic Mapper imagery (during a period when herbaceous cover was senescent) using a probabilistic spectral mixture analysis model. Satellite WCF estimates were compared to field MLC assessments and related to aboveground biomass using allometry. Field-based MLC and remotely sensed WCFs both indicated that woody cover was comparable on control areas and areas burned 11-16 years ago. However, biomass was approximately twofold higher on control sites. Canopy cover was a strong predictor of woody biomass on burned and control areas, but fire history significantly altered the linear cover-biomass relationship on control plots to a curvilinear relationship on burned plots. Results suggest predictions of woody biomass from "generic" two-dimensional (2-D) cover algorithms may underestimate biomass in undisturbed stands and overestimate biomass in stands recovering from disturbance. Improving the accuracy of woody-biomass estimates from field and/or remotely sensed cover may therefore require disturbance-specific models or detection of vegetation height and transforming 2-D vegetation cover to 3-D vegetation volume.     

Refining Biodiversity Conservation Priorities

Abstract:  Although there is widespread agreement about conservation priorities at large scales (i.e., biodiversity hotspots), their boundaries remain too coarse for setting practical conservation goals. Refining hotspot conservation means identifying specific locations (individual habitat patches) of realistic size and scale for managers to protect and politicians to support. Because hotspots have lost most of their original habitat, species endemic to them rely on what remains. The issue now becomes identifying where this habitat is and these species are. We accomplished this by using straightforward remote sensing and GIS techniques, identifying specific locations in Brazil's Atlantic Forest hotspot important for bird conservation. Our method requires a regional map of current forest cover, so we explored six popular products for mapping and quantifying forest: MODIS continuous fields and a MODIS land cover (preclassified products), AVHRR, SPOT VGT, MODIS (satellite images), and a GeoCover Landsat thematic mapper mosaic (jpg). We compared subsets of these forest covers against a forest map based on a Landsat enhanced thematic mapper. The SPOT VGT forest cover predicted forest area and location well, so we combined it with elevation data to refine coarse distribution maps for forest endemic birds. Stacking these species distribution maps enabled identification of the subregion richest in threatened birds—the lowland forests of Rio de Janeiro State. We highlighted eight priority fragments, focusing on one with finer resolved imagery for detailed study. This method allows prioritization of areas for conservation from a region >1 million km² to forest fragments of tens of square kilometers. To set priorities for biodiversity conservation, coarse biological information is sufficient. Hence, our method is attractive for tropical and biologically rich locations, where species location information is sparse.     

Composite likelihood approach to the regression analysis of spatial multivariate ordinal data and spatial compositional data with exact zero values

In many environmental and ecological studies, it is of interest to model compositional data. One approach is to consider positive random vectors that are subject to a unit-sum constraint. In landscape ecological studies, it is common that compositional data are also sampled in space with some elements of the composition absent at certain sampling sites. In this paper, we first propose a practical spatial multivariate ordered probit model for multivariate ordinal data, where the response variables can be viewed as the discretized non-negative compositions without the unit-sum constraint. We then propose a novel two-stage spatial mixture Dirichlet regression model. The first stage models the spatial dependence and the presence of exact zero values, and the second stage models all the non-zero compositional data. A maximum composite likelihood approach is developed for parameter estimation and inference in both the spatial multivariate ordered probit model and the two-stage spatial mixture Dirichlet regression model. The standard errors of the parameter estimates are computed by an estimate of the Godambe information matrix. A simulation study is conducted to evaluate the performance of the proposed models and methods. A land cover data example in landscape ecology further illustrates that accounting for spatial dependence can improve the accuracy in the prediction of presence/absence of different land covers as well as the magnitude of land cover compositions.     

Need for a global map of forest naturalness for a sustainable future

There is a growing need to assess and monitor forest cover and its conservation status over global scales to determine human impact on ecosystems and to develop sustainability plans. Recent approaches to measure regional and global forest status and dynamics are based on remotely sensed estimates of tree cover. We argue that tree cover should not be used to assess the area of forest ecosystems because tree cover is an undefined subset of forest cover. For example, tree cover can indicate a positive trend even in the presence of deforestation, as in the case of plantations. We believe a global map of forest naturalness that accounts for the bio-ecological integrity of forest ecosystems, for example, intact forests, old-growth forest patches, rewilding forests (exploited forest landscapes undergoing long-term natural succession), and managed forests is needed for global forest assessment.     

Appreciating Ecological Complexity: Habitat Contours as a Conceptual Landscape Model

Abstract:  Organisms respond to their surroundings at multiple spatial scales, and different organisms respond differently to the same environment. Existing landscape models, such as the "fragmentation model" (or patch-matrix-corridor model) and the "variegation model," can be limited in their ability to explain complex patterns for different species and across multiple scales. An alternative approach is to conceptualize landscapes as overlaid species-specific habitat contour maps. Key characteristics of this approach are that different species may respond differently to the same environmental conditions and at different spatial scales. Although similar approaches are being used in ecological modeling, there is much room for habitat contours as a useful conceptual tool. By providing an alternative view of landscapes, a contour model may stimulate more field investigations stratified on the basis of ecological variables other than human-defined patches and patch boundaries. A conceptual model of habitat contours may also help to communicate ecological complexity to land managers. Finally, by incorporating additional ecological complexity, a conceptual model based on habitat contours may help to bridge the perceived gap between pattern and process in landscape ecology. Habitat contours do not preclude the use of existing landscape models and should be seen as a complementary approach most suited to heterogeneous human-modified landscapes.     

Development of categorical mapping for quantitative assessment of eutrophication

Spatial distribution of nutrient and phytoplankton variables is often illustrated using categorical mapping for each variable. However, the assessment of eutrophication cannot be derived from a single parameter since a synthesis of the environmental variables related to eutrophication is required. These shortcomings are further complicated since it is difficult to discriminate between distinct trophic states along natural environmental gradients. In the present work, a methodological procedure for quantitative assessment of eutrophication at a spatial scale was examined in the Gulf of Saronicos, Greece, based on a thematic map generated from the synthesis of four variables characterising eutrophication. The categorical map of each variable was developed using the Kriging interpolation method and four trophic levels were indicated (eutrophic, upper-mesotrophic, lower-mesotrophic and oligotrophic) based on nutrient and phytoplankton concentration scaling. Multi-criteria choice methods were applied to generate a final categorical map showing the four trophic levels in the area. This synthesis of categorical maps for assessing eutrophication at a spatial scale is proposed as a methodological procedure appropriate for coastal management studies.     

Environmental filtering and land-use history drive patterns in biomass accumulation in a mediterranean-type landscape

Aboveground biomass (AGB) reflects multiple and often undetermined ecological and land-use processes, yet detailed landscape-level studies of AGB are uncommon due to the difficulty in making consistent measurements at ecologically relevant scales. Working in a protected mediterranean-type landscape (Jasper Ridge Biological Preserve, California, USA), we combined field measurements with remotely sensed data from the Carnegie Airborne Observatory's light detection and ranging (lidar) system to create a detailed AGB map. We then developed a predictive model using a maximum of 56 explanatory variables derived from geologic and historic-ownership maps, a digital elevation model, and geographic coordinates to evaluate possible controls over currently observed AGB patterns. We tested both ordinary least-squares regression (OLS) and autoregressive approaches. OLS explained 44% of the variation in AGB, and simultaneous autoregression with a 100-m neighborhood improved the fit to an r2 = 0.72, while reducing the number of significant predictor variables from 27 variables in the OLS model to 11 variables in the autoregressive model. We also compared the results from these approaches to a more typical field-derived data set; we randomly sampled 5% of the data 1000 times and used the same OLS approach each time. Environmental filters including incident solar radiation, substrate type, and topographic position were significant predictors of AGB in all models. Past ownership was a minor but significant predictor, despite the long history of conservation at the site. The weak predictive power of these environmental variables, and the significant improvement when spatial autocorrelation was incorporated, highlight the importance of land-use history, disturbance regime, and population dynamics as controllers of AGB.     

Mapping Conflicts Between Biodiversity and Human Needs in Langtang National Park, Nepal

We mapped areas of congruence and conflict between the objectives of protecting red pandas ( Ailurus fulgens ) and meeting the claims and needs of people who live in and around Langtang National Park, Nepal. Semi-structured interviews were used to solicit information on land-use practices, and spatial information technology (sketch maps, satellite images, geographical information systems) was used to place these practices in a spatial context and to model the effects of grazing. Spatial information technology was useful for delineating areas where conflicts occur between the objectives of preserving biodiversity and meeting the needs of local residents. Despite the fact that villagers recognize pasture boundaries, rules and regulations govern pasture management, and sanctions are imposed on violators, over 60% of the red panda's habitat is heavily grazed, and all available land within the study site suitable for grazing is already being used. The study suggests that common property management of natural resources to protect biodiversity (i.e., red pandas) and meet the needs of local people at the same time will be difficult.     

Assumption‐versus data‐based approaches to summarizing species’ ranges

For conservation decision making, species’ geographic distributions are mapped using various approaches. Some such efforts have downscaled versions of coarse‐resolution extent‐of‐occurrence maps to fine resolutions for conservation planning. We examined the quality of the extent‐of‐occurrence maps as range summaries and the utility of refining those maps into fine‐resolution distributional hypotheses. Extent‐of‐occurrence maps tend to be overly simple, omit many known and well‐documented populations, and likely frequently include many areas not holding populations. Refinement steps involve typological assumptions about habitat preferences and elevational ranges of species, which can introduce substantial error in estimates of species’ true areas of distribution. However, no model‐evaluation steps are taken to assess the predictive ability of these models, so model inaccuracies are not noticed. Whereas range summaries derived by these methods may be useful in coarse‐grained, global‐extent studies, their continued use in on‐the‐ground conservation applications at fine spatial resolutions is not advisable in light of reliance on assumptions, lack of real spatial resolution, and lack of testing. In contrast, data‐driven techniques that integrate primary data on biodiversity occurrence with remotely sensed data that summarize environmental dimensions (i.e., ecological niche modeling or species distribution modeling) offer data‐driven solutions based on a minimum of assumptions that can be evaluated and validated quantitatively to offer a well‐founded, widely accepted method for summarizing species’ distributional patterns for conservation applications.     

Are existing vegetation maps adequate to predict bird distributions?

Bird species are selective on the vegetation types in which they are found but predictive models of bird distribution based on variables derived from land-use/land-cover maps tend to have limited success. It has been suggested that accuracy of existing maps used to derive predictors is in part responsible for the limited success of bird distribution models. In two areas of 4900 km² of Western Andalusia, Spain, we compared the predictive ability of bird distribution models derived from two existing general-purpose land-use/land-cover maps, which differ in their resolution and accuracy: a coarse scale vegetation map of Europe, the CORINE land-cover map, and a detailed regional map, the 1995 land-use/land-cover map of Andalusia from the SINAMBA (Consejerı́a de Medio Ambiente, Junta de Andalucı́a). We compared the bird distribution models derived from these general-purpose vegetation maps with models derived from two more accurate structural vegetation maps built considering directly variables that influence bird habitat selection, one built from satellite images for this study and another obtained by improving the resolution and accuracy of the SINAMBA map with satellite data. We sampled the presence/absence of bird species at 857 points using 15-min point surveys. Predictive models for 54 bird species were built with generalised additive models (GAMs), using as potential predictors the same set of landscape and vegetation structure variables measured on each map. We compared for each bird species the predictive accuracy of the best model derived from each map. Vegetation structure measured at bird sample points was used as ground-truth for comparing the accuracy of vegetation maps. Although maps differed in their resolution and accuracy, the results show that all of them produced similarly accurate bird distribution models, with a mixed map produced with both thematic and satellite information being the best. The models derived from the more accurate vegetation structure maps obtained from satellite data were not more accurate than those derived directly from the SINAMBA or CORINE maps. Our results suggest that some general-purpose land-use/land-cover maps are accurate enough to derive bird distribution models. There is a certain limit to improve vegetation maps above which there is no effect in their power to predict bird distribution.