荧光原位杂交技术解析发酵产氢细菌群落结构

应用荧光原位杂交(FISH)技术,研究了连续流搅拌槽式(CSTR)发酵制氢反应器中2种产氢发酵类型的菌群组成和发酵类型转化过程中的菌群种类和数量变化及其对产氢速率、生物量和发酵产物的影响.结果表明,梭菌属和肠杆菌科在决定产氢发酵类型方面有重要作用.以梭菌为优势种群的乙醇型发酵比以肠杆菌为优势种群的丁酸型发酵具有更佳的产氢能力.实验结果能够与生物发酵系统常规监测指标形成很好的印证.     

FISH法作为厌氧消化系统运行管理指标的可行性

以高浓度厌氧消化污泥为对象,进行FISH、MPN和产甲烷活性的测定实验.FISH分析得到,厌氧消化污泥中古细菌、嗜乙酸产甲烷菌和嗜氢产甲烷菌占全菌数的比例分别为30%～70%,18%～28%和15%～43%,菌数测定结果FISH法高于MPN法.研究表明,FISH法可用于高浓度厌氧消化污泥的菌相解析,作为处理系统运行管理指标使用.     

Prenatal application of fluorescent in situ hybridization (FISH) for identification of a mosaic Y-chromosome marker,IDIC(Yp)

An amniocentesis was performed at 13.3 weeks' gestation for advanced maternal age. A mosaic sex chromosome pattern was found: of 50 cells examined, 34 had a 45,X karyotype. In 14 cells with a modal number of 46, a recognizable Y was substituted by a small non-fluorescent marker. C-banding identified the marker as an isodicentric in 12 cells. In two cells, the non-fluorescent marker appeared to be monocentric and looked like a non-fluorescent del (Yq), but could have been an isodicentric Y with inactivation of one of the centromeres. Two cells with a modal number of 47 showed two copies of the monocentric marker. Fluorescent in situ hybridization with an alpha satellite Y-specific centromeric probe confirmed the Y-chromosome origin of the markers and allowed for more accurate prenatal diagnostic information.     

荧光原位杂交法在活性污泥硝化细菌检测中的应用

采用荧光原位杂交(FISH)法对活性污泥样品中的硝化细菌进行了检测研究。与传统方法相比,FISH法具有快速便捷的特点,可原位检测出活性污泥菌胶团上的硝化细菌的分布情况,结合稀释的方法,可对环境样品中的硝化细菌进行定量分析。此法既可定性,又可对环境中的硝化细菌进行直接计数,为研究硝化细菌类群的空间和数量分布提供有效的检测工具。     

辽河口芦苇湿地土壤氨氧化菌的时空变化

采用传统的最大或然数法(MPN)和不依赖于培养的变性梯度凝胶电泳技术(DGGE),对辽河口芦苇湿地土壤中AOB的丰度、多样性进行了解析,并试图探究AOB同土壤可溶性盐分等环境因素之间的关系.结果表明:芦苇湿地土壤中AOB多样性指数时空分布存在较大差异,同一月份中不同站点之间群落结构相似性较大,AOB细菌数量与土壤可溶性盐分之间存在显著负相关关系(P<0.05),与土壤总氮和有机质含量之间存在极显著性正相关关系(P<0.01),表明盐分、总氮和有机质含量是辽河口湿地AOB数量时空分布的重要影响因素.     

Fluorescence in situ hybridization (FISH) for rapid detection of aneuploidy: experience in 911 prenatal cases†

Fluorescence in situ hybridization (FISH) was performed with probes specific for chromosomes 13, 18, 21, X and Y on 911 of 11123 (8.2%) amniotic fluid samples submitted to the present authors' laboratory for cytogenetic analysis over an 8-year period. Altogether 3516 hybridizations were performed with an interpretable FISH result on all chromosomes requested in 884/911 (97%) of cases. An uninformative FISH result occurred in 44 hybridizations among 27 cases (3%). Of a total of 89 karyotypically proven cases with aneuploidy that might have been detected by FISH, the overall detection rate was 84%. An inconclusive or incomplete FISH result occurred in 9/89 (10%) of these proven aneuploid cases. In the remaining 80 informative proven aneuploid cases, correct detection of aneuploidy was accomplished in 75/80 (94%) of samples. A false-negative result occurred in the remaining 5/80 (6%) of such informative cases. Eighteen cases had karyotypically proven abnormalities that could not have been detected by the targeted FISH. Aside from these 18 cases, FISH allowed correct detection of normal disomy in 785/804 (98%) of such cases. An incomplete FISH result occurred in 18 normal disomic cases. There was a single possible ‘false-positive’ FISH result for chromosome 21. Interphase FISH analysis of uncultured amniotic fluid cells has been shown to be a useful laboratory tool for rapid fetal aneuploidy screening during pregnancy. As with all clinical laboratory diagnostic tests, incomplete or inconclusive results (or even interpretive errors) occur in a small percentage of cases. Nevertheless, FISH results accompanied by other data and by appropriate counseling provide clinicians and patients with valuable information for clinical decision-making surrounding family planning and pregnancy management. Copyright © 2001 John Wiley & Sons, Ltd.     

应用荧光原位杂交方法检测中国沿海塔玛/链状亚历山大藻复合种(亚洲温带基因型)

近年来,有害赤潮于中国沿海频繁发生,对沿海居民身体健康、水产养殖和自然生态形成了潜在的威胁.由于部分有毒赤潮藻在很低的密度下就有可能导致严重的危害,但传统的采样和分析方法无法对这类有毒赤潮进行有效的检测,因而急需发展准确、高效的检测新方法.根据对中国沿海分离的塔玛/链状亚历山大藻(亚洲温带基因型)核糖体大亚基DNA(LSU rDNA)序列信息的分析,设计了两条特异性的荧光标记探针,并建立了针对中国沿海塔玛/链状亚历山大藻复合种(亚洲温带基因型)的荧光原位杂交检测方法室内模拟实验显示两条探针都能够特异性地标记中国沿海塔玛/链状亚历山大藻(亚洲温带基因型),但标记效果有一定差异,探针SPEC-PROBE2标记效果远好于探针SPEC-PROBE1.经过标记的藻细胞可以通过荧光显微镜和流式细胞仪区分.中国沿海塔玛/链状亚历山大藻荧光原位杂交检测方法的建立将有助于提高海水样品中亚历山大藻监测的准确性和工作效率.     

Magnetic-activated cell sorting (MACS) significantly decreases the hybridization efficiency of fluorescence in situ hybridization (FISH)

Fetal cells were enriched from maternal blood using density gradient centrifugation of Histopaque followed by magnetic-activated cell sorting (MACS) to select CD71-positive cells. For each specimen, cells partially purified by Histopaque were split into equal portions, and each portion was subjected to purification by MACS in parallel. Cells before and after MACS were subjected to dual-color fluorescence in situ hybridization (FISH) analysis with X- and Y-chromosome-specific probes. We found that the hybridization rates were decreased by approximately 10% after MACS based on duplicated analysis for each sample. Copyright © 2001 John Wiley & Sons, Ltd.     

产氢反应器内两种发酵类型细菌的种群结构与发酵特征

通过改变CSTR系统内pH值,启动发酵类型由乙醇型向丁酸型转化,研究了转化前后系统内产氢动态和细菌群落变迁.结果表明,在有机负荷不变的情况下,启动发酵类型转化15d后,系统内种群由乙醇型转化为丁酸型,消耗碱度量由350mg.L-1增至1720mg.L-1,平均比产氢速率由21.2mol.kg-.1d-1降低至11.1mol.kg-.1d-1.荧光原位杂交技术(FISH)对反应系统内3类微生物群的监测结果表明,未启动转化时,肠杆菌、梭菌Ⅰ、Ⅱ和梭菌Ⅺ的相对丰度分别为22%、48%和30%,转化结束后,3类细菌的相对丰度为19%、24%和55%.     

Molecular cytogenetic analysis of term placentae suspected of mosaicism using fluorescence in situ hybridization

In first-trimester chorionic villus sampling (CVS) for prenatal diagnosis, abnormal chromosomal findings, such as mosaicism, trisomies, or suspect abnormal karyotypes, are found more frequently than at amniocentesis. The fact that these chromosomal abnormalities do not always reflect the fetal karyotype but may be restricted to the placenta is a major problem in diagnosis and counselling. In this paper we present the results of fluorescence in situ hybridization (FISH) studies on interphase nuclei of three term placentae investigated because of false-positive findings at first-trimester CVS. The chorionic villi of the first case showed a mosaic chromosome pattern involving a trisomy 10 cell line and a normal cell line, those of the second case a total trisomy 8 cell line, while in the third case a complete monosomy X was found. Follow-up amniocentesis in each of these three cases revealed a normal karyotype. By using FISH, we were able to confirm the presence of the aberrant cell lines, which were all confined to one part of the placenta. FISH on interphase nuclei allows the investigation of large numbers of cells for the existence of numerical chromosome aberrations in a quick and reliable way.     

人工湿地沟壕系统中硝酸盐异化还原成铵细菌群落特征研究

硝酸盐异化还原成铵（Dissimilatory nitrate reduction to ammonium，DNRA）过程，是将易损失的NO₃^--N转化为NH₄⁺-N，而被植物或微生物重新吸收利用，从而有助于湿地沉积物的氮保留.本研究选取石臼漾人工湿地冬、夏两季沟壕中心、边缘表层沉积物，采用高通量测序等分析方法，研究了DNRA细菌群落结构特征.研究结果表明：在空间尺度上，沟壕中心DNRA细菌丰度高于沟壕边缘，分别为（2.26±1.19）×10⁹和（1.22±1.46）×10⁹ copies·g^-1.在时间尺度上，冬夏两季样品中DNRA细菌丰度具有显著性差异（p<0.05）.多样性分析表明，沟壕中心沉积物的DNRA群落丰富度高于沟壕边缘.所有样品中占比最高的DNRA属为Caldilinea（69.75%±3.64%）、Anaeromyxobacter（66.41%±1.19%）.Caldilinea属在夏季样品的占比（39.78%±5.15%）高于冬季样品（29.98%±0.57%），而Anaeromyxobacter属在沟壕中心的占比（35.14%±0.83%）高于沟壕边缘（31.28%±0.76%），且小沟（34.33%±1.40%）高于大沟（32.08%±1.33%）.主坐标分析（PcoA）结果表明，DNRA细菌群落结构具有明显的时间异质性.DNRA细菌丰度与有机质（TOM）、碳氮比（C/N）和含水率（MC）显著相关.本研究揭示了人工湿地沉积物中DNRA细菌的丰度、群落组成、多样性及其与环境因子的关系.     

CSTR系统发酵产氢细菌群落动态与产氢能力关系解析

将CSTR系统内pH由4.2一次性提高至6.0左右,启动发酵类型的转化,研究了转化过程系统内的产氢动态和细菌群落.结果表明,在有机负荷维持在（33±1）kg/(m³·d)的情况下,发酵类型10 d内未发生改变,产氢量8 d内未降低,15 d后系统内种群由乙醇型转化为丁酸型,进水碱度由250 mg/L增至2 450　mg/L.研究中利用荧光原位杂交技术（FISH）对反应系统内3类微生物群进行监测发现,在转化过程中Clostridium cluster XI数量增加,Clostridium cluster Ⅰ 和Ⅱ数量减少,而Enterobacteriaceae始终存在,变化不明显.种群的消长同反应系统产氢能力的高低存在密切关联,以Clostridium cluster Ⅰ和Ⅱ占优势的乙醇型发酵具有更佳的产氢能力,平均比产氢速率为23.6 mol/(kg·d).     

膜生物反应器亚硝化性能的影响因素研究

利用膜生物反应器成功启动了亚硝化工艺处理人工合成废水.为了确定影响亚硝化工艺效果的因素,先后对温度和溶解氧浓度进行了研究,结果表明,在温度35℃并且NH4+-N负荷平均0.45 kg.(m3.d)-1和溶解氧0.5 mg/L的条件下,可使出水中NO3--N的浓度低于20 mg.L-1,而ρ(NO2--N)∶ρ(NH4+-N)接近1.0.同时发现反应器运行期间,在低溶解氧的情况下,膜组件的污染并不严重.荧光原位杂交分析发现,在膜生物反应器中氨氧化菌成为优势菌种,亚硝酸盐氧化菌的活性受到了抑制.微生物群落分析则进一步提供了实现亚硝化工艺所必需的生物信息.     

Fluorescent in situ hybridization (FISH): A new application in the delineation of true vs. pseudomosaicism in prenatal diagnosis

Metaphase chromosomes and interphase nuclei from nine amniotic fluid cultures were studied with fluorescence in situ hybridization (FISH). The samples were initially analyzed with routine G-banding and were diagnosed as having true mosaicism (five patients) or pseudomosaicism (four patients). In our study, FISH analysis could provide additional information to distinguish pseudo– from true mosaicism by allowing interphase studies and analysis of an increased number of metaphase spreads. These results suggest a multilinear origin of ‘in situ’ colonies of cells.     

Prenatal diagnosis of tetrasomy 47,XY, + i(12p) confirmed by in situ hybridization

A case of tetrasomy i(12p) detected prenatally is reported. The patient, a black, 33-year-old G3P2002 at 24 weeks' gestation with an unremarkable family history presented herself for prenatal care. Ultrasound examination showed a fetus with diminished femoral and humeral lengths, and hydramnios. A level II scan confirmed the presence of an omphalocele. Amniocentesis at 31 weeks showed 47,XY, + i(12p) karyotype. An infant with multiple congenital anomalies was delivered at 34 weeks. The infant died after 5 h. Genetic and ultrasonographic examinations in the third trimester were helpful in the investigation of this fetus with multiple congenital anomalies. The careful, complete team counselling afforded by this approach enabled the mother and family to be well adjusted to the strong possibility (and subsequent reality) of an abnormal infant.     

Prenatal identification of a 45,X/46,Xder(Y) mosaicism and confirmation by high resolution cytogenetics and fluorescence in situ hybridization

A 45,X/46,Xder(Y) mosaicism detected prenatally was shown to have a rare Y inversion- duplication or Y/Y translocation which can only be identified by a combination of high resolution cytogenetics and fluorescence in situ hybridization. The present data indicate the usefulness and importance of chromosome-specific probes in the identification and characterization of chromosome rearrangements.     

荧光原位杂交在环境微生物学中的应用及进展

荧光原位杂交技术广泛用于分析复杂环境的微生物群落构成,可以在自然生境中监测和鉴定微生物,并能对未被培养的微生物进行检测.rRNA为靶序列寡核苷酸或PNA探针的荧光原位杂交能提供微生物的形态学、数量、空间分布等信息,现已成为环境科学研究领域中的热点技术.对荧光原位杂交技术的发展和在环境微生物学中的应用进行了综述,探讨了该技术的应用和发展前景.      

Chorionic villus metaphase chromosomes and interphase nuclei analysed by chromosomal in situ suppression (CISS) hybridization

Metaphase chromosomes and interphase nuclei of chorionic villus samples (CVS) in five cases were studied after treatment with trypsin and post-fixation in formaldehyde by chromosomal in situ suppression (CISS) hybridization. Our modified protocol enables the use of in situ hybridization. techniques on CVS preparations after 42 h ofculture. A balanced translocation and trisomy 13 were identified with the aid of CISS hybridization.     

MBR系统内丝状菌污泥膨胀的分子生态学解析

膜 生物反应器 (MembraneBioreactor ,MBR)工艺是目前污水处理技术的研究的热点之一 .以前大部分研究集中于宏观工程参数控制和活性污泥特性对系统运行的作用过程 ,针对系统内活性污泥的分子生态学研究尚少 .本文在长期试验运行基础上 ,发现丝状菌在MBR运行过程中容易大量增殖形成污泥膨胀 ,对系统的处理效率及膜污染造成一定影响 .为了对其膨胀发生过程及变化进行深入的机理解析 ,本研究利用荧光原位杂交 (FluorescentinSituHybridization ,FISH)分子生物学分析技术 ,对MBR系统内丝状菌污泥膨胀的发生过程进行了跟踪研究 .发现引起膨胀的丝状菌主要是 0 2 1NⅡ型丝状细菌 ,G2M探针杂交后的丝状菌相对量的变化逐渐升高 .