外来入侵物种的基因签名及其遗传多样性聚类分析

密码子的使用频率分布能够反映一定的生物特性,因而可作为一种基因签名。本文使用CGR方法来研究外来入侵物种不同组织序列的基因签名及遗传多样性聚类分析,首先得出了刺花莲子草(Alternanthera pungens),紫茎泽兰(Ageratina adenophora),水葫芦(Eichhornia crassipes),微甘菊(Mikania micrantha),土荆芥(Chenopodium ambrosioides),一枝黄花(Solidago canadensis)等6种外来入侵植物的31条序列核苷酸字串长k=1到k=6的情况,并选取k=3,即基因序列的密码子,作为生物特性的一个重要表达。并且构造序列间的CGR欧式距离,进而对外来入侵植物序列遗传多样性进行了聚类分析。通过对所获得的6种外来入侵植物的31条序列的基因签名,得出如下结果：CGR是一种简便且计算量小的方法,且基于CGR方法的基因签名,具有典型的生物特性;入侵植物的基因序列在密码子的使用上是非均衡的,且物种亲缘关系近的,则基因签名相似越高;而且基因签名也揭示出了密码子的第三位碱基偏好使用碱基T的现象,与一般物种密码子第三位碱基偏好G/C情况有强烈反差。此外,从获得的6个物种的31条序列聚类谱系图可以直观看出,入侵植物间存在着一定的亲缘关系,遗传多样性较丰富。由于我们所建立的基于CGR方法的基因签名,不仅能够反映植物特性和进化关系,而且能揭示序列中密码子和碱基的偏好使用情况,因而该方法有利于对外来入侵物种的遗传多样性分析、风险评估及预防控制等提供科学依据。     

Cost-Efficiency of Decaying Wood as a Surrogate for Overall Species Richness in Boreal Forests

Abstract:  Decaying wood is one of the most important elements for species richness in boreal forests. We tested how well reserve selection based on the amount and quality of decaying wood results in a representation of four ecologically different taxa (beetles, birds, wood-inhabiting fungi, and vascular plants). We also compared the cost-efficiency of the use of dead-wood indicators with comprehensive species inventory. Our database included 32 seminatural old-forest stands located in northern Finland. Decaying wood was a relatively good indicator of saproxylic species but not overall species richness. Even though dead wood did not reflect accurately overall species richness, our results indicated that the use of decaying wood as an indicator in site selection was more cost-efficient than using information from large-scale species inventories. Thus, decaying wood is a valuable surrogate for species richness, but other cost-efficient indicators that reflect the requirements of those species which are not dependent on decaying wood should be identified.     

Factors Associated with Alien Plants Transitioning from Casual, to Naturalized, to Invasive

Abstract:  To explain current plant invasions, or predict future ones, more knowledge on which factors increase the probability of alien species becoming naturalized and subsequently invasive is needed. We created a database of the alien plants in seminatural habitats in Ireland that included data on taxonomy, invasive status, invasion history, distribution, and biological and ecological plant characteristics. We used information from this database to determine the importance of these factors in increasing the ability of species to become naturalized and invasive. More specifically, we used two multiple logistic regressions to identify factors that distinguish naturalized from casual alien plant species and invasive from noninvasive, naturalized alien species. Clonal growth, moisture-indicator value, nitrogen-indicator value, native range, and date of first record affected (in order of decreasing importance) the probability of naturalization. Factors that distinguished invasive from noninvasive species were ornamental introduction, hermaphrodite flowers, pollination mode, being invasive elsewhere, onset of flowering season, moisture-indicator value, native range, and date of first record. Incorporation of phylogenetic information had little influence on the results, suggesting that the capacity of alien species to naturalize and become invasive evolved largely independently in several phylogenetic lineages. Whereas some of the variables were important for both transitions, others were only important for naturalization or for invasion. This emphasizes the importance of studying different stages of the invasion process when looking for mechanisms of becoming a successful invasive plant, instead of simply comparing invasive with noninvasive alien species. Our results also suggest that a combination of species traits and other variables is likely to produce the most accurate prediction of invasions.     

平原河网地区滨岸带外来植物入侵现状及影响研究——以上海青浦区为例

河流滨岸带作为一种典型的开放系统,在受到外界干扰的条件下极易被外来植物所入侵并受到严重影响。以上海青浦区为例,通过对河流滨岸带生态系统入侵植物分布及现状调查,以及对两种入侵植物：白花三叶草（Trifolium repens）和加拿大一枝黄花（Solidago canadensis）群落的物种多样性及其土壤特性的实证研究,探讨外来植物入侵对河流滨岸带生态系统造成的影响。结果表明：目前该地区河流滨岸带外来入侵植物共有14科24种,其科、种数分别占到该生态系统所有植物的48．3％与26．1％。入侵植物白花三叶草与加拿大一枝黄花在春、秋两季均显著降低了河流滨岸带植物群落的物种多样性。此外,两种人侵植物也对当地河流滨岸及土壤特性造成了不同程度的影响,其中对土壤含水量、pH值的影响最为显著。该研究填补了平原河网地区河流滨岸带生态系统外来植物入侵研究的空白,有助于今后开展对该生态系统的评价、恢复及管理工作。     

Planting History and Propagule Pressure as Predictors of Invasion by Woody Species in a Temperate Region

Abstract:  We studied 28 alien tree species currently planted for forestry purposes in the Czech Republic to determine the probability of their escape from cultivation and naturalization. Indicators of propagule pressure (number of administrative units in which a species is planted and total planting area) and time of introduction into cultivation were used as explanatory variables in multiple regression models. Fourteen species escaped from cultivation, and 39% of the variance was explained by the number of planting units and the time of introduction, the latter being more important. Species introduced early had a higher probability of escape than those introduced later, with more than 95% probability of escape for those introduced before 1801 and <5% for those introduced after 1892. Probability of naturalization was more difficult to predict, and eight species were misclassified. A model omitting two species with the largest influence on the model yielded similar predictors of naturalization as did the probability of escape. Both phases of invasion therefore appear to be driven by planting and introduction history in a similar way. Our results demonstrate the importance of forestry for recruitment of invasive trees. Six alien forestry trees, classified as invasive in the Czech Republic, are currently reported in nature reserves. In addition, forestry authorities want to increase the diversity of alien species and planting area in the country.     

Monitoring of Biological Diversity: a Common-Ground Approach

Abstract:  Practical approaches to monitoring biological diversity vary widely among countries, and the accumulating data are frequently not generalizable at the international scale. Although many present monitoring schemes, especially in developed countries, produce highly complex data, there is often a lack of basic data about the level and spatial distribution of biodiversity. We augmented the general framework for improving biomonitoring, proposed by Green et al. (2005) , and identified its core tasks and attributes. The first priority for a more unified biodiversity monitoring is to agree on a minimum set of core tasks and attributes, which will make it possible to build a standardized biomonitoring system even in countries with few resources. Our scheme has two main organizational levels—taxa and ecosystems. The basic elements of the biomonitoring system proposed are recording of presence and absence of taxa and ecosystems in a target area, mapping of their distribution in space, and assessment of their status. All the elements have to be repeated over time. Although these tasks are fundamental, they are frequently not considered in currently functioning biomonitoring programs. The whole system has to be hierarchical and additive: if more resources are available, new activities may be added to the basic routine. Agreeing on a common standard will facilitate aggregating measures of biodiversity status and trends into regional and global indices. This information will relate directly to several Convention on Biological Diversity indicators for assessing progress toward the 2010 Biodiversity Target.     

外来鱼类入侵风险评估体系及方法

根据中国外来鱼类的入侵现状,分析了建立外来鱼类入侵风险评估体系的蕈要性、必要性和应用前景.在现状调查、文献分析和专家咨询的基础上,构建了一套包含5个一级指标、12个二级指标、44个三级指标的可定量化的外来鱼类入侵风险评估指标体系,确定了各指标权重,并举例说明了该评估体系的应用.     

Integrated Monitoring and Information Systems for Managing Aquatic Invasive Species in a Changing Climate

Abstract:  Changes in temperature, precipitation, and other climatic drivers and sea-level rise will affect populations of existing native and non-native aquatic species and the vulnerability of aquatic environments to new invasions. Monitoring surveys provide the foundation for assessing the combined effects of climate change and invasions by providing baseline biotic and environmental conditions, although the utility of a survey depends on whether the results are quantitative or qualitative, and other design considerations. The results from a variety of monitoring programs in the United States are available in integrated biological information systems, although many include only non-native species, not native species. Besides including natives, we suggest these systems could be improved through the development of standardized methods that capture habitat and physiological requirements and link regional and national biological databases into distributed Web portals that allow drawing information from multiple sources. Combining the outputs from these biological information systems with environmental data would allow the development of ecological-niche models that predict the potential distribution or abundance of native and non-native species on the basis of current environmental conditions. Environmental projections from climate models can be used in these niche models to project changes in species distributions or abundances under altered climatic conditions and to identify potential high-risk invaders. There are, however, a number of challenges, such as uncertainties associated with projections from climate and niche models and difficulty in integrating data with different temporal and spatial granularity. Even with these uncertainties, integration of biological and environmental information systems, niche models, and climate projections would improve management of aquatic ecosystems under the dual threats of biotic invasions and climate change.     

Quantifying the Indicator Power of an Indicator Species

Abstract:  Biodiversity indicator species are needed for classifying biotopes and sites for conservation, and a number of methods have been developed for determining indicator species for this purpose. Nevertheless, in addition to site classification, there is sometimes a need to define an indicator species that indicates the occurrence of another species. For example, when a species of interest (target species) is difficult to detect or identify, a reliable indicator species can function as a tool that saves time and money. We derived a method that provides a quantitative measure of the indicator power (IP) of an indicator species for the target species or any species assemblage. We calculated the measure of IP from a presence–absence matrix that covered several sites. The method provided a list of indicator species, the presence of which reliably indicated the presence of another species (e.g., a threatened or rare species in a given area). The IP of the species was highest when the number of shared occurrences between the indicator species and the target species was high and, simultaneously, when the indicator species and the target species occurred separately in only a few cases. The IP was also positively influenced by the number of sites with no occurrences of either the indicator or the target species. Our method can also be used to quantify different types of species occurrence indications. We refer to these types as presence–presence, presence–absence, absence–presence, and absence–absence indications. To clarify the use of the method, we examined the situation with red-listed polypores in White-backed Woodpecker (Dendrocopos leucotos) habitats in Fennoscandia and found some suitable indicator species. Our method provides a new, objective way to evaluate the IP of an indicator species.     

外来入侵植物簕仔树若干形态和生理生态特性

簕仔树Mimosa bimucronata在广东为外来入侵种,对其种子形态及生理、叶片生理生态特性进行测定,并与原产地（南美洲）和3种本地（中国广东）植物的相关指标对比,以了解其生态适应性。结果表明：种子长4.29mm,宽3.30mm,大小、含水量（6.23%～8.23%）与原产地的无显著差异;可溶性糖、氨基酸和蛋白质含量分别为32.00、8131.06和2487.04μg·g-1（以干质量计）。活种子比例98.89%～100.00%,萌发率仅32.80%;相对电导率5.35%～11.66%。叶片绿色度29.39,但叶绿素b含量高;对比本地植物,在低光照高湿度下,簕仔树净光合速率（以CO2计）1.339μmol·m-2·s-1低,呼吸速率（以CO2计）1.828μmol·m-2·s-1高,在测定时间内未检测出其蒸腾速率;生理生态指标的表现与阳性植物木荷Schima superba类似,而明显与耐荫植物阴香Cinnamomum burmannii幼苗和九节Psychotria rubra不同。利用其阳性植物特征,可进行遮蔽以减轻潜在的生态危害。     

Monitoring Change in Vertebrate Abundance: the Living Planet Index

Abstract:  The task of measuring the decline of global biodiversity and instituting changes to halt and reverse this downturn has been taken up in response to the Convention on Biological Diversity's 2010 target. It is an undertaking made more difficult by the complex nature of biodiversity and the consequent difficulty in accurately gauging its depletion. In the Living Planet Index, aggregated population trends among vertebrate species indicate the rate of change in the status of biodiversity, and this index can be used to address the question of whether or not the 2010 target has been achieved. We investigated the use of generalized additive models in aggregating large quantities of population trend data, evaluated potential bias that results from collation of existing trends, and explored the feasibility of disaggregating the data (e.g., geographically, taxonomically, regionally, and by thematic area). Our results show strengths in length and completeness of data, little evidence of bias toward threatened species, and the possibility of disaggregation into meaningful subsets. Limitations of the data set are still apparent, in particular the dominance of bird data and gaps in tropical-species population coverage. Population-trend data complement the longer-term, but more coarse-grained, perspectives gained by evaluating species-level extinction rates. To measure progress toward the 2010 target, indicators must be adapted and strategically supplemented with existing data to generate meaningful indicators in time. Beyond 2010, it is critical a strategy be set out for the future development of indicators that will deal with existing data gaps and that is intricately tied to the goals of future biodiversity targets.     

Past and Present Effectiveness of Protected Areas for Conservation of Naturally and Anthropogenically Rare Plant Species

Abstract:  The Global Strategy of Plant Conservation states that at least 60% of threatened plant species should be within protected areas. This goal has been met in some regions with long traditions of plant protection. We used gap analysis to explore how particular groups of species of conservation interest, representing different types of natural or anthropogenic rarity, have been covered by protected areas on a national scale in Estonia during the last 100 years. Species-accumulation curves indicated that plant species that are naturally rare (restricted global or local distribution, always small populations, or very rare habitat requirements) needed almost twice as many protected areas to reach the 60% target as plant species that are rare owing to lack of suitable management (species depending on grassland management, moderate forest disturbances, extensive traditional agriculture, or species potentially threatened by collecting). Temporal analysis of the establishment of protected areas suggested that grouping plant species according to the predominant cause of rarity accurately reflected the history of conservation decision making. Species found in very rare habitats have previously received special conservation attention; species dependent on traditional extensive agriculture have been largely ignored until recently. Legislative initiative and new nature-protection schemes (e.g., Natura 2000, network of protected areas in the European Union) have had a positive influence on all species groups. Consequently, the species groups needing similar action for their conservation are sensitive indicators of the effectiveness of protected-area networks. Different species groups, however, may not be uniformly conserved within protected areas, and all species groups should fulfill the target of 60% coverage within protected areas.     

四种植物提取物的杀螺效果研究

福寿螺是我国华南地区一种危害十分严重的外来入侵生物。采用分布广泛的四种植物：水蜈蚣（Kyllinga brevifolia Rottb.）、红花酢浆草（Oxalis corymbosa DC）、红叶乌桕（Euphorbia cotinifolia L.）和辣蓼草（Polygonum flaccidum Meissn.）作为原料,在实验室内通过人工研磨方法提取植物体内的有效成分作为药剂,分别对福寿螺幼螺进行室内毒杀及刺激其上爬的效果研究。结果表明：水蜈蚣提取物的杀螺效果不明显,而红花酢浆草、红叶乌桕、辣蓼草等三种植物提取物具有较好的杀螺效果。72h的毒性实验表明,这三种植物提取物在质量浓度为400mg·L-1时,均能全部杀死福寿螺幼螺;其中,红花酢浆草的杀螺效果最强,质量浓度为100mg·L-1时的杀螺率就达到80%,200mg·L-1的质量浓度下已能全部杀死福寿螺,红叶乌桕在200mg·L-1质量浓度时的杀螺率为56.67%,而在此质量浓度下辣蓼草仅为26.67%。另外,提取物刺激福寿螺上爬实验结果表明,红花酢浆草和红叶乌桕均有刺激福寿螺向上爬的作用,且红花酢浆草刺激作用稍强于红叶乌桕。综合杀螺和刺激福寿螺上爬作用的效果,可以得出在控制福寿螺上红花酢浆草和红叶乌桕是比较理想的备选植物。     

Reliability of a Higher-Taxon Approach to Richness, Rarity, and Composition Assessments at the Local Scale

Abstract:  A promising shortcut for quantifying species patterns is to use genera and families as surrogates of species. At large spatial scales, concurrence between patterns of richness, rarity, and composition of species and higher taxa is generally high. Only a few researchers, however, have examined this relationship at the local scale, which is frequently the relevant scale in land-use conflicts. We investigated the reliability of the higher-taxon approach in assessing patterns of species richness, rarity, and composition at the local scale. We studied diversity patterns of three commonly used surrogate taxa: vascular plants, ground-dwelling beetles, and moths. We conducted year-round field surveys for these taxa in the Jerusalem Mountains and the Judean foothills, Israel. Richness and composition of species were highly correlated with richness and composition of genera for all taxa. At the family level, correlations with richness and composition of species were much lower. Excluding monotypic genera and families did not affect these relations. Rarity representation based on higher taxa varied considerably depending on the taxon, and rarity scale and was weaker compared with richness and composition representation. Cumulative richness curves of species and genera showed similar patterns, leveling off at equivalent sampling efforts. Genus-level assessments were a reliable surrogate for local patterns of species richness, rarity, and composition, but family-level assessments performed poorly. The advantage of using coarse taxonomic scales in local diversity surveys is that it may decrease identification time and the need for experts, but it will not reduce sampling effort.     

The Environmental Limits to Globalization

Abstract:  Criticisms of globalization have been largely based on its socioeconomic effects, but the environmental impacts of globalization are equally important. These include acceleration of climate change; drawdown of global stocks of cheap energy; substantial increases in air, water, and soil pollution; decreases in biodiversity, including a massive loss of crop and livestock varieties; depletion of ocean fisheries; and a significant increase in invasions of exotic species, including plant, animal, and human pathogens. Because of negative feedback from these changes, the future of globalization itself is bleak. The environmental and social problems inherent in globalization are completely interrelated—any attempt to treat them as separate entities is unlikely to succeed in easing the transition to a postglobalized world.     

紫茎泽兰（Eupatorium adenophorum）入侵地的生物多样性

生物多样性演变是全球变化的重要组成部分,物种入侵对生物多样的影响已成为当前全球变化领域的研究热点之一。本文研究了西双版纳紫茎泽兰（Eupatorium adenophorum）入侵地的植物、土壤动物与土壤微生物的多样性,结果表明：（1）不同程度入侵区的植物种类及其重要值差别较大,在重度入侵区,紫茎泽兰的重要值高达237.74%,但随着入侵程度的降低,植物种类有所增加且紫茎泽兰的重要值随之降低;丰富度指数、多样性指数、优势度指数与均匀度指数均表现为轻度入侵区〉中度入侵区〉重度入侵区。（2）三种入侵区的土壤动物隶属23目,其中弹尾目（Collembola）、蜱螨目（Acarina）和膜翅目（Hymenoptera）为优势种群,三者总量占捕获总数的61.77%;丰富度指数、多样性指数、优势度指数、均匀度指数与密度类群指数均表现为轻度入侵区〉中度入侵区〉重度入侵区。（3）土壤微生物可培养数量类群方面,细菌表现为中度入侵区〉重度入侵区〉轻度入侵区,放线菌、真菌、自生固氮菌与氨氧化细菌均表现为重度入侵区〉中度入侵区〉轻度入侵区;多样性指数表现为重度入侵区〉轻度入侵区〉中度入侵区,优势度指数表现为轻度入侵区=中度入侵区〉重度入侵区,均匀度指数表现为重度入侵区〉轻度入侵区=中度入侵区。可见,紫茎泽兰入侵地的植物与土壤动物多样性随入侵程度加重而降低,但土壤微生物多样性却随入侵程度加重反而呈上升趋势。今后,加强室内模拟与野外定点长期观测相结合试验是探究紫茎泽兰入侵对生物多样性影响机制的研究方向。     

城市生态系统中的生物资源保护

本文讨论了城市生态系统中的生物资源保护问题,论述了动物园、植物园及博物馆等在生物多样性保护方面所作的研部.作者并对今后需要进一步研究的课题提出了建议.     

河流环境DNA科学图谱及其主题演变

人类活动不断对河流生态系统产生影响,并且施加了巨大的压力。为了制定有效措施缓解河流生态系统的压力,需要获得大量有效的河流水生生物信息。环境DNA （environmental DNA,eDNA）技术作为近期环境科学的研究热点,是监测河流水生生物的有效工具。本文选取了Web of Science数据库（Web of Science Database,WOS）中1990—2020年的2 151篇相关文献进行数据挖掘及其可视化分析。河流eDNA研究的发文量逐年递增,在不同时期该研究领域具有不同的研究热点,研究重心逐渐从水生微生物的研究转向更广泛的生态监测、河流管理等方面。关键词频次分析表明,“biodiversity”“conservation”“metabarcoding”是河流eDNA研究持续的研究热点。学科方向的占比变化表明,河流eDNA在微生物学中的研究占比已经大大降低。在国际合作方面,美国是国际合作文章数量最多的国家,但是瑞士、法国、西班牙与他国合作数量占比却位于前列。eDNA技术在收集河流信息方面简单有效,其应用越来越多地应用于河流入侵物种调查、渔业和河流保护,从而可以为决策者应对环境变化的干预和管理活动提供信息支持。     

喜旱莲子草在中国的入侵机理及其生物防治

喜旱莲子草为全球性恶性杂草,也是中国生物多样性国家报告中首批9种重要外来入侵植物之一.本文综述了喜旱莲子草的起源、分布以及在我国的传播扩散和危害,并分析了入侵机制.鉴于这是我国生物防治外来杂草最成功的项目,还介绍了利用昆虫天敌生物防治的过程、实践和经验,讨论了存在的问题及应对策略. 参60